Strain Fitness in Sphingobium sp. HT1-2 around GFF1565

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,592,008	+				-0.3
1,592,056	+				-2.0
1,592,074	+				-1.1
1,592,109	-		GFF1564	0.11	-1.0
1,592,148	+		GFF1564	0.15	-0.2
1,592,162	-		GFF1564	0.17	-0.6
1,592,167	-		GFF1564	0.17	-2.1
1,592,179	-		GFF1564	0.19	-0.2
1,592,268	+		GFF1564	0.28	-0.3
1,592,268	+		GFF1564	0.28	+0.6
1,592,268	+		GFF1564	0.28	+0.6
1,592,276	-		GFF1564	0.29	+0.1
1,592,276	-		GFF1564	0.29	-0.1
1,592,322	+		GFF1564	0.34	-0.9
1,592,344	+		GFF1564	0.36	-0.3
1,592,352	-		GFF1564	0.37	-0.8
1,592,364	+		GFF1564	0.38	-1.5
1,592,393	+		GFF1564	0.42	-0.5
1,592,393	+		GFF1564	0.42	-0.4
1,592,401	-		GFF1564	0.42	-1.5
1,592,401	-		GFF1564	0.42	-0.5
1,592,401	-		GFF1564	0.42	-0.3
1,592,401	-		GFF1564	0.42	-0.6
1,592,401	-		GFF1564	0.42	+0.7
1,592,401	-		GFF1564	0.42	-0.1
1,592,401	-		GFF1564	0.42	-0.9
1,592,401	-		GFF1564	0.42	-2.1
1,592,401	-		GFF1564	0.42	-0.4
1,592,408	+		GFF1564	0.43	+0.8
1,592,408	-		GFF1564	0.43	+0.6
1,592,416	-		GFF1564	0.44	+1.9
1,592,447	+		GFF1564	0.47	-0.8
1,592,448	+		GFF1564	0.48	-0.2
1,592,456	-		GFF1564	0.48	-1.0
1,592,456	-		GFF1564	0.48	+0.1
1,592,456	-		GFF1564	0.48	-1.1
1,592,468	+		GFF1564	0.50	-0.6
1,592,470	-		GFF1564	0.50	-0.8
1,592,470	-		GFF1564	0.50	-2.1
1,592,470	-		GFF1564	0.50	-0.1
1,592,487	+		GFF1564	0.52	+0.0
1,592,508	+		GFF1564	0.54	-0.0
1,592,560	+		GFF1564	0.60	-0.9
1,592,561	-		GFF1564	0.60	+0.4
1,592,569	-		GFF1564	0.61	-0.6
1,592,585	-		GFF1564	0.62	-0.3
1,592,598	+		GFF1564	0.64	-1.1
1,592,603	+		GFF1564	0.64	+0.1
1,592,603	+		GFF1564	0.64	-0.7
1,592,603	+		GFF1564	0.64	+0.7
1,592,604	+		GFF1564	0.64	-1.0
1,592,606	-		GFF1564	0.65	+0.0
1,592,610	+		GFF1564	0.65	+0.7
1,592,616	-		GFF1564	0.66	-0.0
1,592,620	+		GFF1564	0.66	+1.5
1,592,628	-		GFF1564	0.67	-1.3
1,592,628	-		GFF1564	0.67	-1.7
1,592,649	+		GFF1564	0.69	-2.1
1,592,649	+		GFF1564	0.69	+0.5
1,592,649	+		GFF1564	0.69	+0.5
1,592,649	+		GFF1564	0.69	-1.1
1,592,649	+		GFF1564	0.69	-2.0
1,592,656	-		GFF1564	0.70	+1.2
1,592,657	-		GFF1564	0.70	+0.3
1,592,657	-		GFF1564	0.70	-0.9
1,592,657	-		GFF1564	0.70	-0.9
1,592,659	+		GFF1564	0.70	+1.5
1,592,659	+		GFF1564	0.70	+0.1
1,592,659	+		GFF1564	0.70	-1.6
1,592,659	+		GFF1564	0.70	-0.0
1,592,659	+		GFF1564	0.70	+0.3
1,592,659	+		GFF1564	0.70	-1.5
1,592,659	+		GFF1564	0.70	+0.2
1,592,667	-		GFF1564	0.71	-1.5
1,592,667	-		GFF1564	0.71	+1.1
1,592,711	+		GFF1564	0.76	-0.6
1,592,711	-		GFF1564	0.76	+1.3
1,592,724	-		GFF1564	0.77	-1.7
1,592,730	-		GFF1564	0.78	-0.2
1,592,742	+		GFF1564	0.79	-1.7
1,592,742	+		GFF1564	0.79	+0.3
1,592,742	+		GFF1564	0.79	+0.9
1,592,742	+		GFF1564	0.79	-0.5
1,592,742	+		GFF1564	0.79	+1.0
1,592,760	-		GFF1564	0.81	+0.3
1,592,768	+		GFF1564	0.82	+1.1
1,592,787	+		GFF1564	0.84	+0.1
1,592,794	-		GFF1564	0.85	-1.3
1,592,796	-		GFF1564	0.85	-0.3
1,592,797	+		GFF1564	0.85	+0.0
1,592,801	-		GFF1564	0.85	-0.7
1,592,819	-		GFF1564	0.87	-2.1
1,592,823	-		GFF1564	0.88	-0.1
1,592,832	+		GFF1564	0.89	+0.7
1,592,896	+				-1.2
1,592,918	-				+0.2
1,592,937	-				+0.2
1,592,940	+				-1.3
1,592,952	+				-1.6
1,592,973	+				-0.3
1,592,978	+				-0.4
1,592,978	+				-0.6
1,592,979	+				-1.9
1,592,979	+				+0.8
1,592,986	+				-0.2
1,592,986	+				+0.2
1,592,987	+				-2.7
1,592,994	-				-0.7
1,592,994	-				-1.3
1,593,002	+				+1.0
1,593,004	-				-0.8
1,593,048	+				-0.7
1,593,056	-				+0.5
1,593,076	+				-1.3
1,593,085	-				-0.7
1,593,104	-				+0.1
1,593,109	+				-0.2
1,593,161	+		GFF1565	0.12	+0.1
1,593,169	-		GFF1565	0.13	-0.6
1,593,169	-		GFF1565	0.13	-1.2
1,593,171	+		GFF1565	0.13	-0.3
1,593,178	+		GFF1565	0.13	-0.2
1,593,184	+		GFF1565	0.14	-1.7
1,593,184	+		GFF1565	0.14	-0.3
1,593,184	+		GFF1565	0.14	-2.2
1,593,184	+		GFF1565	0.14	-1.5
1,593,189	+		GFF1565	0.14	-0.3
1,593,189	+		GFF1565	0.14	-1.1
1,593,189	+		GFF1565	0.14	-0.3
1,593,197	-		GFF1565	0.15	-1.3
1,593,197	-		GFF1565	0.15	-1.2
1,593,197	-		GFF1565	0.15	+0.1
1,593,242	-		GFF1565	0.18	-0.6
1,593,258	-		GFF1565	0.19	+1.1
1,593,260	+		GFF1565	0.19	-0.7
1,593,260	+		GFF1565	0.19	+0.2
1,593,268	-		GFF1565	0.20	-0.3
1,593,270	+		GFF1565	0.20	+0.2
1,593,276	-		GFF1565	0.21	-0.5
1,593,282	-		GFF1565	0.21	+0.2
1,593,305	+		GFF1565	0.23	+0.2
1,593,316	+		GFF1565	0.23	+1.1
1,593,316	+		GFF1565	0.23	+0.1
1,593,324	-		GFF1565	0.24	+0.5
1,593,324	-		GFF1565	0.24	-1.4
1,593,352	+		GFF1565	0.26	-0.1
1,593,357	+		GFF1565	0.26	+0.1
1,593,357	+		GFF1565	0.26	-1.7
1,593,360	-		GFF1565	0.27	-1.4
1,593,364	+		GFF1565	0.27	+1.4
1,593,364	+		GFF1565	0.27	-1.8
1,593,412	+		GFF1565	0.30	-0.6
1,593,417	+		GFF1565	0.31	-1.5
1,593,420	-		GFF1565	0.31	+0.8
1,593,425	-		GFF1565	0.31	-0.3
1,593,433	+		GFF1565	0.32	-0.3
1,593,444	+		GFF1565	0.33	+0.6
1,593,446	+		GFF1565	0.33	-0.5
1,593,454	-		GFF1565	0.34	-0.3
1,593,462	+		GFF1565	0.34	+0.9
1,593,462	+		GFF1565	0.34	-0.2
1,593,470	-		GFF1565	0.35	-1.3
1,593,485	-		GFF1565	0.36	-1.1
1,593,486	+		GFF1565	0.36	-0.4
1,593,498	+		GFF1565	0.37	+0.0
1,593,532	-		GFF1565	0.39	+0.3
1,593,534	+		GFF1565	0.39	-0.3
1,593,534	+		GFF1565	0.39	+0.1
1,593,534	+		GFF1565	0.39	+0.5
1,593,537	-		GFF1565	0.40	-0.5
1,593,537	-		GFF1565	0.40	-0.1
1,593,537	-		GFF1565	0.40	+0.5
1,593,550	+		GFF1565	0.41	+0.7
1,593,558	-		GFF1565	0.41	-1.2
1,593,558	-		GFF1565	0.41	+1.5
1,593,559	+		GFF1565	0.41	-0.6
1,593,574	-		GFF1565	0.42	-0.7
1,593,592	+		GFF1565	0.44	+0.1
1,593,602	+		GFF1565	0.44	+1.4
1,593,602	+		GFF1565	0.44	-1.9
1,593,604	+		GFF1565	0.44	-0.6
1,593,610	-		GFF1565	0.45	+1.5
1,593,610	-		GFF1565	0.45	-0.1
1,593,610	-		GFF1565	0.45	-0.3
1,593,612	-		GFF1565	0.45	-1.6
1,593,617	+		GFF1565	0.45	-0.9
1,593,627	-		GFF1565	0.46	-2.5
1,593,632	-		GFF1565	0.47	+0.1
1,593,634	+		GFF1565	0.47	-0.2
1,593,642	-		GFF1565	0.47	+0.1
1,593,642	-		GFF1565	0.47	+0.9
1,593,642	-		GFF1565	0.47	-0.5
1,593,642	-		GFF1565	0.47	-2.0
1,593,683	+		GFF1565	0.50	+0.4
1,593,683	+		GFF1565	0.50	-0.5
1,593,683	+		GFF1565	0.50	-1.7
1,593,691	-		GFF1565	0.51	+0.0
1,593,700	+		GFF1565	0.51	-0.7
1,593,712	+		GFF1565	0.52	+0.2
1,593,715	-		GFF1565	0.53	-0.3
1,593,717	+		GFF1565	0.53	-0.1
1,593,725	-		GFF1565	0.53	+0.0
1,593,725	-		GFF1565	0.53	+1.1
1,593,725	-		GFF1565	0.53	-0.1
1,593,725	-		GFF1565	0.53	-1.2
1,593,754	+		GFF1565	0.55	-0.5
1,593,754	+		GFF1565	0.55	-0.8
1,593,762	-		GFF1565	0.56	-0.4
1,593,762	-		GFF1565	0.56	+0.6
1,593,762	-		GFF1565	0.56	-0.9
1,593,762	-		GFF1565	0.56	+1.2
1,593,768	+		GFF1565	0.56	-1.1
1,593,770	+		GFF1565	0.57	+0.2
1,593,770	+		GFF1565	0.57	-0.2
1,593,778	-		GFF1565	0.57	-0.4
1,593,778	-		GFF1565	0.57	-0.5
1,593,778	-		GFF1565	0.57	-1.7
1,593,830	-		GFF1565	0.61	+0.2
1,593,854	+		GFF1565	0.63	-1.2
1,593,856	+		GFF1565	0.63	+0.3
1,593,862	-		GFF1565	0.63	-0.8
1,593,874	+		GFF1565	0.64	+0.1
1,593,884	+		GFF1565	0.65	+0.7
1,593,884	+		GFF1565	0.65	+0.4
1,593,892	-		GFF1565	0.65	+0.6
1,593,994	+		GFF1565	0.73	-1.0
1,593,994	+		GFF1565	0.73	+1.4
1,593,996	-		GFF1565	0.73	-1.5
1,594,002	-		GFF1565	0.74	-0.6
1,594,026	+		GFF1565	0.75	-0.6
1,594,034	-		GFF1565	0.76	-0.3
1,594,045	+		GFF1565	0.77	-0.2
1,594,053	-		GFF1565	0.77	+1.0
1,594,053	-		GFF1565	0.77	-1.0
1,594,058	-		GFF1565	0.78	-1.6
1,594,087	+		GFF1565	0.80	-0.5
1,594,109	+		GFF1565	0.81	+0.7
1,594,109	+		GFF1565	0.81	+0.1
1,594,117	-		GFF1565	0.82	-0.9
1,594,117	-		GFF1565	0.82	-1.5
1,594,118	+		GFF1565	0.82	+0.6
1,594,118	+		GFF1565	0.82	+0.0
1,594,126	-		GFF1565	0.83	-0.4
1,594,126	-		GFF1565	0.83	+0.0
1,594,128	+		GFF1565	0.83	-2.8
1,594,128	+		GFF1565	0.83	-0.1
1,594,128	+		GFF1565	0.83	-0.0
1,594,128	+		GFF1565	0.83	+0.3
1,594,131	-		GFF1565	0.83	-0.1
1,594,141	+		GFF1565	0.84	+0.6
1,594,168	+		GFF1565	0.86	-1.0
1,594,184	-		GFF1565	0.87	+0.9
1,594,194	-		GFF1565	0.88	-0.2
1,594,207	+		GFF1565	0.88	+1.2
1,594,241	-				-1.6
1,594,254	+				-2.1
1,594,259	-				-0.8
1,594,259	-				+0.7
1,594,273	+				-1.7
1,594,273	+				-0.7
1,594,285	+				+0.9
1,594,290	+				-0.7
1,594,298	-				+0.0
1,594,298	-				-1.5
1,594,305	-				+0.1
1,594,310	-				-2.2
1,594,316	-				-2.9
1,594,348	+				+0.2
1,594,353	+				-1.6
1,594,429	-				-0.2
1,594,436	-				+0.6
1,594,475	+				+0.6
1,594,475	+				-0.5
1,594,475	+				-0.1
1,594,475	+				-1.9
1,594,483	-				-2.4
1,594,514	+		GFF1566	0.11	-0.3
1,594,524	+		GFF1566	0.14	+0.3
1,594,549	+		GFF1566	0.22	+1.0
1,594,597	+		GFF1566	0.37	+1.3
1,594,616	-		GFF1566	0.43	-0.3
1,594,619	+		GFF1566	0.44	-1.6
1,594,652	-		GFF1566	0.54	+0.2
1,594,681	-		GFF1566	0.63	-2.1
1,594,704	+		GFF1566	0.70	-0.8
1,594,704	-		GFF1566	0.70	+0.5
1,594,747	+		GFF1566	0.84	-0.6
1,594,755	+		GFF1566	0.86	-0.3
1,594,763	-		GFF1566	0.89	+0.7
1,594,763	-		GFF1566	0.89	+0.0
1,594,765	+		GFF1566	0.89	-1.4
1,594,765	+		GFF1566	0.89	-0.6
1,594,773	-				-0.1
1,594,773	-				+2.0
1,594,775	+				+2.1
1,594,805	-				+0.6
1,594,821	-				-1.3
1,594,885	+				-0.2
1,594,892	+				+1.5
1,594,893	-				-0.3
1,594,932	-				+0.3
1,594,932	-				-0.5
1,594,962	+		GFF1567	0.13	+1.0
1,594,963	+		GFF1567	0.13	-0.1
1,594,985	-		GFF1567	0.16	-0.2
1,594,996	+		GFF1567	0.17	-3.1
1,595,004	-		GFF1567	0.18	+0.3
1,595,017	+		GFF1567	0.20	-1.8
1,595,017	+		GFF1567	0.20	-1.3
1,595,017	+		GFF1567	0.20	-0.2
1,595,025	-		GFF1567	0.21	-1.5
1,595,025	-		GFF1567	0.21	+0.7
1,595,025	-		GFF1567	0.21	+0.1
1,595,027	+		GFF1567	0.21	-0.1
1,595,027	+		GFF1567	0.21	-0.5
1,595,027	+		GFF1567	0.21	+0.7
1,595,027	+		GFF1567	0.21	-1.0
1,595,027	+		GFF1567	0.21	-0.5
1,595,027	+		GFF1567	0.21	+0.5
1,595,027	+		GFF1567	0.21	+0.1
1,595,035	-		GFF1567	0.22	+0.0
1,595,035	-		GFF1567	0.22	-0.7
1,595,035	-		GFF1567	0.22	-0.1
1,595,035	-		GFF1567	0.22	-0.2
1,595,035	-		GFF1567	0.22	-1.0
1,595,035	-		GFF1567	0.22	-0.3
1,595,035	-		GFF1567	0.22	-0.0
1,595,035	-		GFF1567	0.22	+0.5
1,595,035	-		GFF1567	0.22	+0.0
1,595,055	+		GFF1567	0.25	-0.2
1,595,055	+		GFF1567	0.25	-0.1
1,595,073	-		GFF1567	0.27	-1.2
1,595,088	+		GFF1567	0.29	+1.5
1,595,092	-		GFF1567	0.30	+0.4
1,595,101	+		GFF1567	0.31	+1.0
1,595,119	+		GFF1567	0.33	-3.0
1,595,119	+		GFF1567	0.33	-0.1
1,595,120	+		GFF1567	0.33	+0.1
1,595,121	+		GFF1567	0.33	+0.7
1,595,127	-		GFF1567	0.34	-0.2
1,595,127	-		GFF1567	0.34	-1.3
1,595,127	-		GFF1567	0.34	-0.0
1,595,128	-		GFF1567	0.34	-1.5
1,595,129	+		GFF1567	0.35	-1.6
1,595,129	+		GFF1567	0.35	-1.2
1,595,136	+		GFF1567	0.35	+0.5
1,595,137	-		GFF1567	0.36	-2.3
1,595,137	-		GFF1567	0.36	+0.9
1,595,137	-		GFF1567	0.36	+0.2
1,595,137	-		GFF1567	0.36	-0.7
1,595,154	-		GFF1567	0.38	-0.5
1,595,154	-		GFF1567	0.38	-0.8
1,595,159	-		GFF1567	0.38	-0.7
1,595,164	-		GFF1567	0.39	-0.6
1,595,164	-		GFF1567	0.39	-1.7
1,595,169	-		GFF1567	0.40	-0.1
1,595,171	+		GFF1567	0.40	-0.4
1,595,171	+		GFF1567	0.40	-0.7
1,595,178	-		GFF1567	0.41	+1.1
1,595,179	-		GFF1567	0.41	-0.7
1,595,203	-		GFF1567	0.44	-0.4
1,595,203	-		GFF1567	0.44	-0.1
1,595,244	+		GFF1567	0.49	-2.0
1,595,246	+		GFF1567	0.50	-1.3
1,595,252	-		GFF1567	0.50	+0.3
1,595,310	+		GFF1567	0.58	-2.3
1,595,318	-		GFF1567	0.59	+0.5
1,595,351	+		GFF1567	0.63	-1.2
1,595,354	+		GFF1567	0.64	-0.3
1,595,354	+		GFF1567	0.64	+0.0