Strain Fitness in Sphingobium sp. HT1-2 around GFF1542

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,573,137	-		GFF1541	0.18	-1.0
1,573,172	+		GFF1541	0.22	+0.4
1,573,180	-		GFF1541	0.22	-0.1
1,573,194	-		GFF1541	0.24	-2.4
1,573,195	+		GFF1541	0.24	+0.5
1,573,196	+		GFF1541	0.24	+0.6
1,573,196	+		GFF1541	0.24	-0.7
1,573,203	+		GFF1541	0.25	-0.6
1,573,215	+		GFF1541	0.26	-1.1
1,573,221	+		GFF1541	0.27	-1.1
1,573,223	-		GFF1541	0.27	-3.3
1,573,237	+		GFF1541	0.29	-0.3
1,573,241	-		GFF1541	0.29	+0.9
1,573,243	+		GFF1541	0.29	-0.3
1,573,245	-		GFF1541	0.29	+0.1
1,573,251	-		GFF1541	0.30	+0.1
1,573,266	-		GFF1541	0.32	+0.2
1,573,310	+		GFF1541	0.36	+0.5
1,573,310	+		GFF1541	0.36	+0.9
1,573,310	+		GFF1541	0.36	-1.0
1,573,310	+		GFF1541	0.36	-1.9
1,573,310	+		GFF1541	0.36	+1.3
1,573,310	+		GFF1541	0.36	-1.0
1,573,310	+		GFF1541	0.36	-1.2
1,573,310	+		GFF1541	0.36	-0.4
1,573,310	+		GFF1541	0.36	+0.7
1,573,318	-		GFF1541	0.37	+1.0
1,573,318	-		GFF1541	0.37	+0.5
1,573,318	-		GFF1541	0.37	+1.2
1,573,326	+		GFF1541	0.38	-1.3
1,573,361	-		GFF1541	0.42	-0.5
1,573,365	+		GFF1541	0.42	-0.6
1,573,371	+		GFF1541	0.43	-1.3
1,573,373	-		GFF1541	0.43	-1.5
1,573,421	+		GFF1541	0.48	+0.6
1,573,468	+		GFF1541	0.54	+1.1
1,573,471	-		GFF1541	0.54	+0.1
1,573,472	+		GFF1541	0.54	-0.3
1,573,476	+		GFF1541	0.54	-0.8
1,573,491	+		GFF1541	0.56	+0.3
1,573,499	-		GFF1541	0.57	-1.1
1,573,500	+		GFF1541	0.57	-0.6
1,573,500	+		GFF1541	0.57	-1.4
1,573,500	+		GFF1541	0.57	+0.9
1,573,508	-		GFF1541	0.58	+0.8
1,573,508	-		GFF1541	0.58	-1.6
1,573,508	-		GFF1541	0.58	+1.4
1,573,508	-		GFF1541	0.58	-0.9
1,573,509	-		GFF1541	0.58	-0.6
1,573,529	+		GFF1541	0.60	+0.0
1,573,529	+		GFF1541	0.60	-1.1
1,573,529	+		GFF1541	0.60	-0.5
1,573,529	+		GFF1541	0.60	+0.1
1,573,537	-		GFF1541	0.61	-0.6
1,573,537	-		GFF1541	0.61	+0.1
1,573,537	-		GFF1541	0.61	-0.6
1,573,537	-		GFF1541	0.61	-0.6
1,573,537	-		GFF1541	0.61	-1.7
1,573,537	-		GFF1541	0.61	-1.0
1,573,537	-		GFF1541	0.61	+0.5
1,573,539	+		GFF1541	0.61	+1.1
1,573,572	-		GFF1541	0.65	+0.1
1,573,574	+		GFF1541	0.65	+0.4
1,573,602	-		GFF1541	0.68	+0.1
1,573,616	+		GFF1541	0.69	-0.2
1,573,616	+		GFF1541	0.69	-0.7
1,573,616	+		GFF1541	0.69	-0.1
1,573,624	-		GFF1541	0.70	-0.1
1,573,638	+		GFF1541	0.72	-1.0
1,573,641	+		GFF1541	0.72	+0.0
1,573,657	-		GFF1541	0.74	+1.1
1,573,662	-		GFF1541	0.74	-2.4
1,573,662	-		GFF1541	0.74	-1.3
1,573,668	-		GFF1541	0.75	+0.0
1,573,670	+		GFF1541	0.75	-0.6
1,573,683	+		GFF1541	0.77	-0.0
1,573,692	-		GFF1541	0.78	-1.7
1,573,708	-		GFF1541	0.79	+0.3
1,573,708	-		GFF1541	0.79	-0.8
1,573,720	+		GFF1541	0.81	-0.9
1,573,765	+		GFF1541	0.86	+1.6
1,573,771	+		GFF1541	0.86	-0.3
1,573,779	-		GFF1541	0.87	+0.5
1,573,779	-		GFF1541	0.87	+1.4
1,573,779	-		GFF1541	0.87	+0.7
1,573,779	-		GFF1541	0.87	+0.1
1,573,779	-		GFF1541	0.87	-1.5
1,573,798	+		GFF1541	0.89	-0.0
1,573,816	+				+1.0
1,573,830	+				+0.4
1,573,833	-				-0.6
1,573,835	-				+0.5
1,573,843	-				-0.6
1,573,898	+				-0.7
1,573,906	-				-0.7
1,573,911	-				-1.7
1,573,911	-				+0.2
1,573,931	+				-0.1
1,573,962	+				+1.3
1,573,966	+				+0.4
1,573,970	-				-0.1
1,573,977	+				-2.9
1,573,977	+				-1.9
1,573,985	+				+0.6
1,573,993	-				-1.3
1,573,993	-				+0.8
1,573,998	-				+0.9
1,574,008	-				+0.4
1,574,013	+				-0.7
1,574,032	+				+1.0
1,574,032	-				-0.3
1,574,034	-				+0.1
1,574,048	+				+0.1
1,574,049	+				-0.3
1,574,051	-				-0.3
1,574,051	-				+0.6
1,574,051	-				+0.5
1,574,060	+				-0.4
1,574,084	-				+0.4
1,574,091	-				+0.3
1,574,151	-				+0.8
1,574,151	-				+1.0
1,574,166	+				+0.8
1,574,166	+				-0.4
1,574,174	-				-1.0
1,574,174	-				-0.3
1,574,174	-				-0.6
1,574,174	-				-0.3
1,574,174	-				-1.1
1,574,174	-				-0.3
1,574,184	+				+0.3
1,574,185	+				+0.5
1,574,185	+				-1.9
1,574,195	+				-1.7
1,574,239	+		GFF1542	0.13	+0.7
1,574,247	-		GFF1542	0.14	+0.4
1,574,247	-		GFF1542	0.14	-0.4
1,574,293	-		GFF1542	0.19	+1.1
1,574,298	-		GFF1542	0.19	+1.1
1,574,298	-		GFF1542	0.19	+0.5
1,574,312	+		GFF1542	0.20	+0.0
1,574,312	+		GFF1542	0.20	-0.5
1,574,312	-		GFF1542	0.20	+0.6
1,574,320	-		GFF1542	0.21	+0.2
1,574,329	-		GFF1542	0.22	-0.7
1,574,336	+		GFF1542	0.23	+0.3
1,574,372	+		GFF1542	0.26	+0.4
1,574,374	-		GFF1542	0.27	-1.2
1,574,374	-		GFF1542	0.27	+0.5
1,574,411	+		GFF1542	0.30	-1.2
1,574,420	-		GFF1542	0.31	-0.1
1,574,438	-		GFF1542	0.33	-2.6
1,574,440	+		GFF1542	0.33	-0.7
1,574,440	-		GFF1542	0.33	-0.7
1,574,447	+		GFF1542	0.34	+1.3
1,574,455	-		GFF1542	0.35	+0.3
1,574,461	-		GFF1542	0.35	-0.4
1,574,474	-		GFF1542	0.37	-1.6
1,574,488	-		GFF1542	0.38	+1.3
1,574,506	+		GFF1542	0.40	-1.1
1,574,555	+		GFF1542	0.45	-0.5
1,574,555	+		GFF1542	0.45	-0.4
1,574,555	+		GFF1542	0.45	-0.7
1,574,555	+		GFF1542	0.45	-1.0
1,574,555	+		GFF1542	0.45	+0.1
1,574,562	-		GFF1542	0.45	-1.1
1,574,563	-		GFF1542	0.46	-0.3
1,574,563	-		GFF1542	0.46	+0.9
1,574,563	-		GFF1542	0.46	-0.1
1,574,563	-		GFF1542	0.46	+0.9
1,574,581	-		GFF1542	0.47	+0.7
1,574,581	-		GFF1542	0.47	-0.7
1,574,581	-		GFF1542	0.47	-1.3
1,574,604	+		GFF1542	0.50	-1.7
1,574,617	+		GFF1542	0.51	-2.4
1,574,642	+		GFF1542	0.53	+0.1
1,574,746	-		GFF1542	0.64	+0.0
1,574,787	-		GFF1542	0.68	-0.7
1,574,788	+		GFF1542	0.68	+0.2
1,574,821	-		GFF1542	0.71	+0.1
1,574,845	-		GFF1542	0.74	+0.1
1,574,847	+		GFF1542	0.74	-0.5
1,574,857	+		GFF1542	0.75	+0.1
1,574,865	-		GFF1542	0.76	+1.2
1,574,875	+		GFF1542	0.77	-0.4
1,574,875	+		GFF1542	0.77	-0.3
1,574,880	+		GFF1542	0.77	+0.1
1,574,883	-		GFF1542	0.77	-2.5
1,574,883	-		GFF1542	0.77	+0.3
1,574,899	-		GFF1542	0.79	+0.1
1,574,922	+		GFF1542	0.81	-0.4
1,574,930	+		GFF1542	0.82	-1.7
1,574,938	-		GFF1542	0.83	-0.3
1,574,940	+		GFF1542	0.83	+0.1
1,574,940	+		GFF1542	0.83	+0.5
1,574,948	-		GFF1542	0.84	+1.8
1,574,948	-		GFF1542	0.84	+0.0
1,574,948	-		GFF1542	0.84	-0.5
1,574,948	-		GFF1542	0.84	+2.0
1,574,963	+		GFF1542	0.85	-0.2
1,574,966	+		GFF1542	0.86	-1.9
1,574,988	-		GFF1542	0.88	+0.4
1,574,993	-		GFF1542	0.88	-2.6
1,575,001	+		GFF1542	0.89	-0.4
1,575,001	+		GFF1542	0.89	-0.5
1,575,001	+		GFF1542	0.89	+0.1
1,575,001	+		GFF1542	0.89	-0.5
1,575,003	-		GFF1542	0.89	-0.0
1,575,004	-		GFF1542	0.90	-0.0
1,575,009	-				-0.9
1,575,044	-				-1.5
1,575,044	-				-0.1
1,575,062	-				+0.1
1,575,062	-				+0.5
1,575,067	-				-0.2
1,575,091	+				+0.5
1,575,114	-				-0.0
1,575,140	+				-0.8
1,575,147	+				-1.0
1,575,156	+				-0.9
1,575,161	+				+1.0
1,575,161	+				+0.6
1,575,164	-				-1.2
1,575,164	-				+1.7
1,575,171	-				-1.8
1,575,176	+				+0.9
1,575,184	-				+2.2
1,575,196	+				+1.4