Strain Fitness in Sphingobium sp. HT1-2 around GFF1464

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,490,034	+		GFF1462	0.89	+1.4
1,490,076	-				-2.9
1,490,122	+				-0.9
1,490,123	+				-1.2
1,490,123	-				+0.4
1,490,131	-				+0.4
1,490,165	+				-0.2
1,490,170	+				-1.1
1,490,173	+				+0.3
1,490,178	-				-0.7
1,490,187	+				+1.3
1,490,188	-				-0.1
1,490,218	+		GFF1463	0.12	-0.3
1,490,234	+		GFF1463	0.14	+0.6
1,490,235	+		GFF1463	0.14	+0.4
1,490,243	-		GFF1463	0.15	+0.4
1,490,277	+		GFF1463	0.19	+1.3
1,490,307	+		GFF1463	0.23	-2.1
1,490,307	+		GFF1463	0.23	+0.4
1,490,307	+		GFF1463	0.23	+0.4
1,490,307	+		GFF1463	0.23	-0.0
1,490,307	+		GFF1463	0.23	+0.2
1,490,307	+		GFF1463	0.23	-0.4
1,490,307	+		GFF1463	0.23	-0.1
1,490,307	+		GFF1463	0.23	-0.1
1,490,315	-		GFF1463	0.24	+0.3
1,490,315	-		GFF1463	0.24	+0.5
1,490,315	-		GFF1463	0.24	-2.1
1,490,315	-		GFF1463	0.24	+0.9
1,490,315	-		GFF1463	0.24	+0.3
1,490,337	-		GFF1463	0.27	+0.9
1,490,359	+		GFF1463	0.30	-1.2
1,490,368	+		GFF1463	0.31	+0.1
1,490,368	+		GFF1463	0.31	-0.0
1,490,368	+		GFF1463	0.31	+0.3
1,490,368	+		GFF1463	0.31	-0.6
1,490,368	+		GFF1463	0.31	-0.3
1,490,368	+		GFF1463	0.31	+0.6
1,490,368	+		GFF1463	0.31	+0.5
1,490,368	+		GFF1463	0.31	+1.1
1,490,369	+		GFF1463	0.31	-1.4
1,490,376	-		GFF1463	0.32	+0.1
1,490,376	-		GFF1463	0.32	-0.3
1,490,376	-		GFF1463	0.32	-0.7
1,490,376	-		GFF1463	0.32	-0.3
1,490,376	-		GFF1463	0.32	+0.5
1,490,376	-		GFF1463	0.32	+0.2
1,490,376	-		GFF1463	0.32	-2.1
1,490,376	-		GFF1463	0.32	-0.4
1,490,376	-		GFF1463	0.32	+0.4
1,490,376	-		GFF1463	0.32	+0.8
1,490,376	-		GFF1463	0.32	-1.6
1,490,388	-		GFF1463	0.34	-2.5
1,490,397	+		GFF1463	0.35	-0.3
1,490,397	+		GFF1463	0.35	+0.7
1,490,407	+		GFF1463	0.36	+0.4
1,490,407	+		GFF1463	0.36	-1.4
1,490,407	+		GFF1463	0.36	-0.7
1,490,532	+		GFF1463	0.52	-0.2
1,490,540	-		GFF1463	0.53	+0.6
1,490,574	+		GFF1463	0.58	+0.3
1,490,574	+		GFF1463	0.58	-0.3
1,490,582	-		GFF1463	0.59	-1.2
1,490,582	-		GFF1463	0.59	-1.4
1,490,650	-		GFF1463	0.67	-1.0
1,490,664	+		GFF1463	0.69	-0.2
1,490,664	+		GFF1463	0.69	-0.0
1,490,664	+		GFF1463	0.69	+0.4
1,490,667	+		GFF1463	0.70	-1.4
1,490,694	+		GFF1463	0.73	-1.5
1,490,694	+		GFF1463	0.73	+0.2
1,490,699	+		GFF1463	0.74	+0.2
1,490,702	-		GFF1463	0.74	-1.1
1,490,702	-		GFF1463	0.74	+0.3
1,490,704	+		GFF1463	0.74	-0.8
1,490,760	-		GFF1463	0.82	-0.7
1,490,780	-		GFF1463	0.84	-0.4
1,490,832	+				-1.7
1,490,845	-				-0.2
1,490,864	-				+0.1
1,490,872	+				-0.9
1,490,872	+				+0.3
1,490,872	+				+0.1
1,490,872	+				-2.3
1,490,877	+				+0.3
1,490,880	-				-0.1
1,490,891	+				+1.7
1,490,896	+				+0.4
1,490,898	+				-0.3
1,490,898	+				+0.2
1,490,906	-				-0.2
1,490,920	+				-1.5
1,490,920	+				+0.4
1,490,920	-				-0.4
1,490,977	-				+0.5
1,490,977	-				+0.7
1,491,009	-				-0.9
1,491,009	-				-1.0
1,491,011	+				-0.5
1,491,019	-				+0.0
1,491,019	-				-0.0
1,491,035	+				+0.6
1,491,057	+				-2.0
1,491,057	+				-1.3
1,491,057	+				-0.6
1,491,063	+				+0.0
1,491,063	-				-0.7
1,491,079	-				-1.7
1,491,093	+				-1.3
1,491,105	+				-0.7
1,491,106	-				-1.3
1,491,112	-				+0.4
1,491,149	+				+0.6
1,491,152	-				-0.5
1,491,157	-				-0.3
1,491,184	+				-1.0
1,491,184	+				-0.4
1,491,200	+				-0.3
1,491,208	-				-0.5
1,491,246	+				-0.3
1,491,249	-				+0.9
1,491,253	+				-0.9
1,491,254	-				-0.0
1,491,261	-				+1.5
1,491,286	+				-2.0
1,491,296	+				-0.1
1,491,296	+				-0.0
1,491,299	-				-0.2
1,491,304	-		GFF1464	0.10	-1.3
1,491,318	+		GFF1464	0.11	-1.0
1,491,345	+		GFF1464	0.11	-0.9
1,491,388	+		GFF1464	0.13	-0.5
1,491,405	-		GFF1464	0.14	+0.1
1,491,416	-		GFF1464	0.14	-0.1
1,491,422	-		GFF1464	0.14	-0.6
1,491,551	+		GFF1464	0.19	-1.6
1,491,557	-		GFF1464	0.19	+0.8
1,491,575	+		GFF1464	0.20	+0.7
1,491,583	-		GFF1464	0.20	-0.7
1,491,586	+		GFF1464	0.20	+0.0
1,491,586	+		GFF1464	0.20	+0.3
1,491,594	-		GFF1464	0.20	-0.1
1,491,602	-		GFF1464	0.21	+0.3
1,491,602	-		GFF1464	0.21	+0.1
1,491,660	-		GFF1464	0.23	+1.4
1,491,697	+		GFF1464	0.24	-0.3
1,491,699	-		GFF1464	0.24	+0.1
1,491,700	-		GFF1464	0.24	-0.1
1,491,700	-		GFF1464	0.24	+0.1
1,491,705	-		GFF1464	0.24	-0.2
1,491,731	-		GFF1464	0.25	-0.3
1,491,749	+		GFF1464	0.26	+0.6
1,491,749	+		GFF1464	0.26	-0.9
1,491,749	+		GFF1464	0.26	+0.3
1,491,749	+		GFF1464	0.26	-0.5
1,491,752	-		GFF1464	0.26	-1.5
1,491,757	-		GFF1464	0.26	-0.3
1,491,774	+		GFF1464	0.27	-1.2
1,491,774	+		GFF1464	0.27	+0.7
1,491,774	+		GFF1464	0.27	-0.3
1,491,782	-		GFF1464	0.27	-0.7
1,491,782	-		GFF1464	0.27	-1.9
1,491,782	-		GFF1464	0.27	+0.1
1,491,782	-		GFF1464	0.27	-1.4
1,491,782	-		GFF1464	0.27	-1.6
1,491,815	+		GFF1464	0.28	+0.5
1,491,815	-		GFF1464	0.28	-3.0
1,491,828	-		GFF1464	0.29	+1.3
1,491,844	-		GFF1464	0.29	-0.5
1,491,846	+		GFF1464	0.29	+0.1
1,491,873	+		GFF1464	0.30	-0.7
1,491,888	+		GFF1464	0.31	+0.0
1,491,894	-		GFF1464	0.31	-0.0
1,491,903	+		GFF1464	0.31	-1.7
1,491,906	-		GFF1464	0.31	-2.0
1,491,908	+		GFF1464	0.31	-2.0
1,491,908	+		GFF1464	0.31	-0.8
1,491,916	-		GFF1464	0.32	+0.7
1,491,927	-		GFF1464	0.32	-1.8
1,491,927	-		GFF1464	0.32	-1.6
1,491,927	-		GFF1464	0.32	-1.1
1,491,965	+		GFF1464	0.33	-0.3
1,491,971	+		GFF1464	0.34	+0.5
1,492,030	+		GFF1464	0.36	-0.3
1,492,030	+		GFF1464	0.36	-0.9
1,492,038	-		GFF1464	0.36	+0.2
1,492,038	-		GFF1464	0.36	+1.2
1,492,041	-		GFF1464	0.36	-0.0
1,492,042	+		GFF1464	0.36	-0.4
1,492,042	+		GFF1464	0.36	-0.0
1,492,043	+		GFF1464	0.36	-1.5
1,492,043	+		GFF1464	0.36	-0.4
1,492,043	-		GFF1464	0.36	+0.4
1,492,050	-		GFF1464	0.36	-0.9
1,492,070	+		GFF1464	0.37	-0.4
1,492,072	+		GFF1464	0.37	-0.1
1,492,078	-		GFF1464	0.37	+0.2
1,492,078	-		GFF1464	0.37	+0.1
1,492,080	-		GFF1464	0.37	-1.9
1,492,106	-		GFF1464	0.38	+0.1
1,492,106	-		GFF1464	0.38	-0.2
1,492,106	-		GFF1464	0.38	+1.3
1,492,133	-		GFF1464	0.39	+0.0
1,492,133	-		GFF1464	0.39	-0.2
1,492,161	+		GFF1464	0.40	-0.4
1,492,179	-		GFF1464	0.41	+0.0
1,492,185	+		GFF1464	0.41	-0.4
1,492,191	+		GFF1464	0.41	-0.4
1,492,191	+		GFF1464	0.41	-1.3
1,492,191	+		GFF1464	0.41	+0.7
1,492,196	+		GFF1464	0.41	-0.0
1,492,196	+		GFF1464	0.41	+1.3
1,492,196	+		GFF1464	0.41	+1.0
1,492,199	-		GFF1464	0.42	-0.4
1,492,199	-		GFF1464	0.42	+0.4
1,492,199	-		GFF1464	0.42	-0.9
1,492,199	-		GFF1464	0.42	-1.5
1,492,199	-		GFF1464	0.42	-2.6
1,492,199	-		GFF1464	0.42	+0.2
1,492,204	-		GFF1464	0.42	+0.4
1,492,204	-		GFF1464	0.42	-0.6
1,492,204	-		GFF1464	0.42	-2.4
1,492,204	-		GFF1464	0.42	-0.6
1,492,218	+		GFF1464	0.42	+0.4
1,492,218	+		GFF1464	0.42	-1.6
1,492,218	+		GFF1464	0.42	+1.7
1,492,236	-		GFF1464	0.43	-0.7
1,492,276	-		GFF1464	0.44	-0.8
1,492,285	+		GFF1464	0.45	-1.8
1,492,285	+		GFF1464	0.45	+0.3
1,492,285	+		GFF1464	0.45	-0.9
1,492,293	-		GFF1464	0.45	-0.2
1,492,293	-		GFF1464	0.45	-0.3
1,492,293	-		GFF1464	0.45	+1.3
1,492,293	-		GFF1464	0.45	-2.0
1,492,293	-		GFF1464	0.45	-1.2
1,492,293	-		GFF1464	0.45	-0.3
1,492,297	+		GFF1464	0.45	+0.8
1,492,297	+		GFF1464	0.45	-2.1
1,492,297	+		GFF1464	0.45	+0.2
1,492,299	+		GFF1464	0.45	-0.1
1,492,299	+		GFF1464	0.45	-1.0
1,492,305	-		GFF1464	0.45	-1.4
1,492,305	-		GFF1464	0.45	+0.3
1,492,305	-		GFF1464	0.45	-1.8
1,492,307	-		GFF1464	0.45	+0.4
1,492,307	-		GFF1464	0.45	-0.1
1,492,318	+		GFF1464	0.46	-0.8
1,492,326	-		GFF1464	0.46	-1.3
1,492,371	-		GFF1464	0.48	+0.3
1,492,380	+		GFF1464	0.48	+1.3
1,492,396	-		GFF1464	0.49	-0.0
1,492,398	+		GFF1464	0.49	+0.6
1,492,398	+		GFF1464	0.49	-0.1
1,492,406	-		GFF1464	0.49	+0.4
1,492,415	-		GFF1464	0.49	-0.5
1,492,422	-		GFF1464	0.49	-0.1
1,492,431	+		GFF1464	0.50	+0.9
1,492,437	+		GFF1464	0.50	-1.8
1,492,449	+		GFF1464	0.50	+0.4
1,492,449	+		GFF1464	0.50	-0.9
1,492,454	+		GFF1464	0.51	-0.1
1,492,457	-		GFF1464	0.51	-1.9
1,492,457	-		GFF1464	0.51	+0.0
1,492,457	-		GFF1464	0.51	-0.8
1,492,462	-		GFF1464	0.51	-1.2
1,492,462	-		GFF1464	0.51	+0.3
1,492,471	-		GFF1464	0.51	-0.7
1,492,473	+		GFF1464	0.51	-0.9
1,492,480	-		GFF1464	0.51	-0.4
1,492,532	+		GFF1464	0.53	-0.4
1,492,532	+		GFF1464	0.53	+1.1
1,492,532	+		GFF1464	0.53	-1.9
1,492,532	+		GFF1464	0.53	+0.4
1,492,532	+		GFF1464	0.53	+0.3
1,492,532	+		GFF1464	0.53	+0.1
1,492,540	-		GFF1464	0.54	-0.4
1,492,540	-		GFF1464	0.54	-1.0
1,492,540	-		GFF1464	0.54	-0.2
1,492,566	-		GFF1464	0.55	+0.4
1,492,573	-		GFF1464	0.55	-0.9
1,492,607	+		GFF1464	0.56	-2.3
1,492,608	+		GFF1464	0.56	-2.0
1,492,634	+		GFF1464	0.57	-1.0
1,492,634	-		GFF1464	0.57	-2.3
1,492,710	-		GFF1464	0.60	-0.3
1,492,735	-		GFF1464	0.60	-0.4
1,492,753	+		GFF1464	0.61	+0.4
1,492,760	+		GFF1464	0.61	+0.3
1,492,760	+		GFF1464	0.61	-1.9
1,492,761	+		GFF1464	0.61	-0.2
1,492,793	+		GFF1464	0.63	-1.3
1,492,793	+		GFF1464	0.63	+0.2
1,492,799	+		GFF1464	0.63	-1.3
1,492,801	-		GFF1464	0.63	-1.7
1,492,807	-		GFF1464	0.63	+0.6
1,492,814	-		GFF1464	0.63	+0.0
1,492,818	+		GFF1464	0.63	-1.1
1,492,825	+		GFF1464	0.64	+0.5
1,492,825	+		GFF1464	0.64	-1.0
1,492,825	+		GFF1464	0.64	-0.4
1,492,825	+		GFF1464	0.64	-1.9
1,492,833	-		GFF1464	0.64	-1.0
1,492,833	-		GFF1464	0.64	+0.5
1,492,838	-		GFF1464	0.64	-1.0
1,492,957	-		GFF1464	0.68	+0.8
1,492,957	-		GFF1464	0.68	+0.3
1,492,979	+		GFF1464	0.69	-0.6
1,492,982	-		GFF1464	0.69	+1.0
1,492,982	-		GFF1464	0.69	+0.3
1,492,987	-		GFF1464	0.69	+1.0
1,492,997	-		GFF1464	0.70	+0.4
1,493,017	-		GFF1464	0.70	-0.4
1,493,026	-		GFF1464	0.71	-0.1
1,493,039	-		GFF1464	0.71	-0.7
1,493,044	+		GFF1464	0.71	-0.4
1,493,052	-		GFF1464	0.72	-0.4
1,493,070	-		GFF1464	0.72	-0.1
1,493,094	-		GFF1464	0.73	+0.3
1,493,097	+		GFF1464	0.73	-0.2
1,493,102	+		GFF1464	0.73	+1.6
1,493,102	+		GFF1464	0.73	-1.8
1,493,105	-		GFF1464	0.74	-1.0
1,493,139	+		GFF1464	0.75	-2.0
1,493,147	-		GFF1464	0.75	+1.9
1,493,149	+		GFF1464	0.75	+0.2
1,493,154	+		GFF1464	0.75	-2.9
1,493,164	-		GFF1464	0.76	+0.1
1,493,166	+		GFF1464	0.76	-2.3
1,493,184	-		GFF1464	0.76	+0.1
1,493,193	+		GFF1464	0.77	+0.2
1,493,200	+		GFF1464	0.77	+0.6
1,493,200	+		GFF1464	0.77	+0.1
1,493,201	-		GFF1464	0.77	-2.4
1,493,208	-		GFF1464	0.77	-0.5
1,493,208	-		GFF1464	0.77	-1.2
1,493,220	-		GFF1464	0.78	+0.1
1,493,251	+		GFF1464	0.79	+0.6
1,493,265	+		GFF1464	0.79	-0.4
1,493,267	+		GFF1464	0.79	-2.8
1,493,278	+		GFF1464	0.80	-0.3
1,493,278	-		GFF1464	0.80	+1.7
1,493,285	+		GFF1464	0.80	-1.4
1,493,285	+		GFF1464	0.80	-1.0
1,493,288	-		GFF1464	0.80	-1.1
1,493,296	+		GFF1464	0.80	-1.9
1,493,296	+		GFF1464	0.80	-1.7
1,493,296	+		GFF1464	0.80	+0.4
1,493,296	+		GFF1464	0.80	-0.2
1,493,304	-		GFF1464	0.81	+1.0
1,493,310	+		GFF1464	0.81	+0.4
1,493,310	+		GFF1464	0.81	-1.3
1,493,315	+		GFF1464	0.81	-0.7
1,493,318	-		GFF1464	0.81	-0.4
1,493,323	-		GFF1464	0.81	+0.7
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