Strain Fitness in Sphingobium sp. HT1-2 around GFF145

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
138,145	-				-0.8
138,145	-				-0.1
138,145	-				+1.0
138,149	+				-1.3
138,150	-				+0.4
138,162	+				-3.2
138,165	-				-2.2
138,171	-				-1.8
138,254	-		GFF143	0.13	-2.5
138,340	-		GFF143	0.28	-0.9
138,347	+		GFF143	0.29	+0.6
138,355	-		GFF143	0.30	-0.8
138,363	+		GFF143	0.32	-0.6
138,363	-		GFF143	0.32	+1.2
138,372	-		GFF143	0.33	-0.9
138,464	+		GFF143	0.49	-0.4
138,489	-		GFF143	0.53	-1.4
138,497	-		GFF143	0.55	+1.0
138,534	+		GFF143	0.61	+0.7
138,534	+		GFF143	0.61	+0.3
138,534	+		GFF143	0.61	-0.5
138,542	+		GFF143	0.63	-1.5
138,542	-		GFF143	0.63	-0.7
138,542	-		GFF143	0.63	+0.5
138,542	-		GFF143	0.63	-0.6
138,566	+		GFF143	0.67	-1.7
138,566	-		GFF143	0.67	+0.9
138,579	+		GFF143	0.69	-0.4
138,596	+		GFF143	0.72	-0.8
138,604	-		GFF143	0.73	-1.1
138,630	-		GFF143	0.78	+0.0
138,646	+		GFF143	0.80	-1.6
138,648	+		GFF143	0.81	-0.4
138,666	-		GFF143	0.84	-2.1
138,666	-		GFF143	0.84	-0.3
138,666	-		GFF143	0.84	+1.3
138,672	-		GFF143	0.85	-0.4
138,752	+				+1.2
138,767	+				-1.4
138,770	-				-1.2
138,781	+				-2.0
138,781	-				-0.4
138,791	-				+0.0
138,851	+		GFF144	0.25	-1.7
138,851	+		GFF144	0.25	-1.8
138,859	-		GFF144	0.27	-2.1
138,884	-		GFF144	0.34	-0.6
138,889	-		GFF144	0.36	-1.3
138,894	-		GFF144	0.37	-0.9
138,896	+		GFF144	0.38	+0.2
138,911	+		GFF144	0.42	+1.5
138,919	-		GFF144	0.45	-0.5
138,919	-		GFF144	0.45	+1.3
138,936	+		GFF144	0.50	+1.4
138,985	+		GFF144	0.64	+0.3
138,985	+		GFF144	0.64	+0.3
138,985	+		GFF144	0.64	-0.3
138,994	+		GFF144	0.66	+0.5
139,002	-		GFF144	0.69	+0.1
139,023	+		GFF144	0.75	-1.5
139,028	+		GFF144	0.76	-0.1
139,028	+		GFF144	0.76	+0.1
139,036	-		GFF144	0.79	-0.5
139,036	-		GFF144	0.79	+0.4
139,036	-		GFF144	0.79	-0.3
139,057	+		GFF144	0.85	-2.5
139,057	+		GFF144	0.85	-2.6
139,065	-		GFF144	0.87	+0.5
139,065	-		GFF144	0.87	-0.8
139,067	+		GFF144	0.88	-0.1
139,067	+		GFF144	0.88	-2.2
139,067	+		GFF144	0.88	+0.4
139,067	+		GFF144	0.88	+0.4
139,067	+		GFF144	0.88	+0.0
139,067	+		GFF144	0.88	+0.6
139,067	+		GFF144	0.88	-0.3
139,067	+		GFF144	0.88	-1.5
139,067	+		GFF144	0.88	-1.0
139,067	+		GFF144	0.88	+0.1
139,067	+		GFF144	0.88	-0.4
139,067	+		GFF144	0.88	-0.7
139,067	+		GFF144	0.88	+0.2
139,067	+		GFF144	0.88	-1.4
139,067	+		GFF144	0.88	-0.6
139,067	+		GFF144	0.88	-0.5
139,070	-		GFF144	0.88	-0.5
139,073	+		GFF144	0.89	+0.2
139,075	-				+0.4
139,075	-				+0.3
139,075	-				-0.4
139,075	-				+1.5
139,075	-				+0.0
139,075	-				-0.4
139,075	-				-1.0
139,075	-				+0.3
139,075	-				+0.7
139,075	-				-0.5
139,075	-				-0.5
139,075	-				+0.6
139,081	-				-0.2
139,081	-				+0.8
139,113	-				+0.5
139,120	+				+0.5
139,128	+				-1.6
139,135	+				+0.7
139,135	-				+1.2
140,802	+				-1.0
140,802	+				-1.8
140,804	+				+0.8
140,810	-				+1.6
140,810	-				-0.7
140,810	-				-0.8
140,826	-				-0.8
140,842	+				+0.3
140,842	+				+0.0
140,850	-				-2.3
140,850	-				-0.3
140,864	+				-1.2
140,876	+				-0.3
140,881	+				+0.2
140,952	+				+0.7
140,962	+				-1.4
140,962	+				+0.5
140,962	+				-0.1
140,962	+				-0.5
140,970	-				+0.3
140,970	-				+0.6
140,978	-				-0.6
140,982	-				+0.3
140,984	+				+0.2
140,984	+				+0.9
140,994	-				-2.0
141,000	-				+0.2
141,010	+		GFF146	0.10	-0.1
141,010	+		GFF146	0.10	-1.4
141,010	+		GFF146	0.10	+1.3
141,010	+		GFF146	0.10	-0.0
141,010	+		GFF146	0.10	-1.3
141,010	+		GFF146	0.10	+0.5
141,014	+		GFF146	0.10	-0.5
141,014	+		GFF146	0.10	-0.5
141,015	+		GFF146	0.10	-0.3
141,015	+		GFF146	0.10	+0.9
141,015	+		GFF146	0.10	+0.3
141,018	-		GFF146	0.11	-0.4
141,018	-		GFF146	0.11	+0.6
141,018	-		GFF146	0.11	+0.5
141,022	-		GFF146	0.11	+0.1
141,023	-		GFF146	0.11	-0.1
141,023	-		GFF146	0.11	+0.2
141,023	-		GFF146	0.11	+1.4
141,023	-		GFF146	0.11	+1.4
141,023	-		GFF146	0.11	-1.0
141,023	-		GFF146	0.11	-0.2
141,036	+		GFF146	0.11	-1.8
141,036	-		GFF146	0.11	-0.5
141,038	+		GFF146	0.12	-0.5
141,046	-		GFF146	0.12	+0.9
141,064	+		GFF146	0.13	-2.6
141,064	+		GFF146	0.13	-2.7
141,069	+		GFF146	0.13	+0.3
141,069	+		GFF146	0.13	-0.1
141,069	+		GFF146	0.13	+0.1
141,069	+		GFF146	0.13	-0.6
141,072	-		GFF146	0.13	+0.7
141,077	+		GFF146	0.13	-1.6
141,077	-		GFF146	0.13	-1.4
141,077	-		GFF146	0.13	+0.8
141,082	+		GFF146	0.14	-1.2
141,082	+		GFF146	0.14	-2.1
141,082	+		GFF146	0.14	-0.3
141,090	-		GFF146	0.14	+1.2
141,090	-		GFF146	0.14	+1.5
141,090	-		GFF146	0.14	-0.3
141,095	-		GFF146	0.14	+0.1
141,095	-		GFF146	0.14	+0.3
141,095	-		GFF146	0.14	-2.0
141,100	-		GFF146	0.14	+1.6
141,136	-		GFF146	0.16	-1.7
141,143	+		GFF146	0.17	+0.5
141,143	+		GFF146	0.17	+1.3
141,157	-		GFF146	0.17	+0.2
141,162	+		GFF146	0.17	-0.2
141,170	-		GFF146	0.18	+0.8
141,176	+		GFF146	0.18	-0.7
141,184	+		GFF146	0.18	-1.2
141,186	+		GFF146	0.19	-0.1
141,187	+		GFF146	0.19	+0.6
141,206	+		GFF146	0.19	-0.4
141,206	+		GFF146	0.19	+1.0
141,214	-		GFF146	0.20	-0.3
141,214	-		GFF146	0.20	+0.2
141,214	-		GFF146	0.20	+1.1
141,216	+		GFF146	0.20	-0.5
141,221	+		GFF146	0.20	+0.2
141,221	+		GFF146	0.20	+1.5
141,229	-		GFF146	0.21	-1.8
141,273	+		GFF146	0.23	-1.4
141,273	+		GFF146	0.23	-1.0
141,273	+		GFF146	0.23	+0.9
141,278	+		GFF146	0.23	-0.5
141,281	-		GFF146	0.23	-2.0
141,281	-		GFF146	0.23	+0.1
141,281	-		GFF146	0.23	-1.2
141,281	-		GFF146	0.23	+0.9
141,281	-		GFF146	0.23	-0.2
141,287	-		GFF146	0.23	+0.8
141,307	-		GFF146	0.24	-0.1
141,335	+		GFF146	0.26	+0.0
141,401	+		GFF146	0.29	+0.5
141,409	-		GFF146	0.29	-1.5
141,409	-		GFF146	0.29	-0.3
141,417	+		GFF146	0.29	+0.5
141,431	+		GFF146	0.30	-1.1
141,431	+		GFF146	0.30	+0.5
141,439	+		GFF146	0.30	-1.6
141,476	+		GFF146	0.32	-1.1
141,484	-		GFF146	0.33	+0.5
141,486	+		GFF146	0.33	+0.3
141,486	+		GFF146	0.33	+0.3
141,486	+		GFF146	0.33	-0.1
141,494	-		GFF146	0.33	-0.5
141,494	-		GFF146	0.33	+0.4
141,494	-		GFF146	0.33	-1.2
141,502	-		GFF146	0.33	-1.5
141,502	-		GFF146	0.33	-1.4
141,528	+		GFF146	0.35	-1.5
141,528	+		GFF146	0.35	-0.3
141,528	+		GFF146	0.35	+0.8
141,536	-		GFF146	0.35	-0.6
141,536	-		GFF146	0.35	-1.6
141,550	+		GFF146	0.36	+0.4
141,558	-		GFF146	0.36	-1.7
141,563	-		GFF146	0.36	-1.9
141,568	+		GFF146	0.36	-1.1
141,573	+		GFF146	0.37	-3.5
141,573	+		GFF146	0.37	-1.7
141,573	+		GFF146	0.37	+0.7
141,573	+		GFF146	0.37	+1.4
141,573	+		GFF146	0.37	-1.9
141,576	-		GFF146	0.37	+1.2
141,578	+		GFF146	0.37	-0.2
141,581	-		GFF146	0.37	-3.4
141,581	-		GFF146	0.37	+0.5
141,581	-		GFF146	0.37	-0.3
141,581	-		GFF146	0.37	-1.0
141,581	-		GFF146	0.37	-1.7
141,581	-		GFF146	0.37	-0.8
141,581	-		GFF146	0.37	+1.0
141,581	-		GFF146	0.37	+0.3
141,581	-		GFF146	0.37	+0.5
141,604	+		GFF146	0.38	-0.7
141,605	+		GFF146	0.38	-1.9
141,611	+		GFF146	0.39	-0.3
141,611	+		GFF146	0.39	-0.0
141,612	-		GFF146	0.39	+0.9
141,612	-		GFF146	0.39	-0.1
141,612	-		GFF146	0.39	+1.6
141,613	-		GFF146	0.39	-0.2
141,620	+		GFF146	0.39	-0.2
141,628	-		GFF146	0.39	-0.9
141,664	+		GFF146	0.41	+1.0
141,664	+		GFF146	0.41	-0.0
141,664	+		GFF146	0.41	+0.0
141,665	-		GFF146	0.41	+1.5
141,674	+		GFF146	0.41	-0.6
141,675	-		GFF146	0.42	+1.0
141,684	-		GFF146	0.42	+0.2
141,685	+		GFF146	0.42	+0.3
141,695	+		GFF146	0.42	-0.2
141,695	+		GFF146	0.42	-0.3
141,695	+		GFF146	0.42	-1.0
141,695	+		GFF146	0.42	-1.4
141,695	+		GFF146	0.42	+0.3
141,695	+		GFF146	0.42	-1.6
141,699	-		GFF146	0.43	+0.1
141,702	-		GFF146	0.43	+0.6
141,703	-		GFF146	0.43	-0.7
141,703	-		GFF146	0.43	-0.5
141,703	-		GFF146	0.43	+0.4
141,703	-		GFF146	0.43	-0.8
141,710	+		GFF146	0.43	-0.6
141,710	-		GFF146	0.43	+1.3
141,718	-		GFF146	0.44	+1.1