Strain Fitness in Sphingobium sp. HT1-2 around GFF1419

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,448,063	+		GFF1417	0.45	+0.4
1,448,063	+		GFF1417	0.45	+0.4
1,448,103	+		GFF1417	0.50	-1.9
1,448,103	+		GFF1417	0.50	-0.9
1,448,103	+		GFF1417	0.50	-1.3
1,448,103	+		GFF1417	0.50	-1.4
1,448,103	+		GFF1417	0.50	-1.4
1,448,103	+		GFF1417	0.50	+0.5
1,448,103	+		GFF1417	0.50	-0.4
1,448,103	+		GFF1417	0.50	+0.1
1,448,103	+		GFF1417	0.50	+0.3
1,448,103	+		GFF1417	0.50	+0.2
1,448,103	+		GFF1417	0.50	-0.4
1,448,103	+		GFF1417	0.50	+1.0
1,448,103	+		GFF1417	0.50	-2.0
1,448,103	+		GFF1417	0.50	-0.5
1,448,110	-		GFF1417	0.51	+0.3
1,448,111	-		GFF1417	0.51	-1.0
1,448,111	-		GFF1417	0.51	+0.8
1,448,111	-		GFF1417	0.51	-0.7
1,448,111	-		GFF1417	0.51	+1.4
1,448,111	-		GFF1417	0.51	-0.6
1,448,111	-		GFF1417	0.51	-0.8
1,448,111	-		GFF1417	0.51	-1.3
1,448,111	-		GFF1417	0.51	-2.1
1,448,111	-		GFF1417	0.51	-2.2
1,448,111	-		GFF1417	0.51	-1.4
1,448,111	-		GFF1417	0.51	+0.0
1,448,113	+		GFF1417	0.51	-0.5
1,448,113	+		GFF1417	0.51	+0.4
1,448,113	+		GFF1417	0.51	+0.6
1,448,121	-		GFF1417	0.52	+0.9
1,448,121	-		GFF1417	0.52	-1.1
1,448,126	-		GFF1417	0.53	-0.1
1,448,126	-		GFF1417	0.53	-0.4
1,448,173	+		GFF1417	0.59	+0.8
1,448,173	+		GFF1417	0.59	-0.3
1,448,173	+		GFF1417	0.59	+0.1
1,448,173	+		GFF1417	0.59	+0.1
1,448,173	+		GFF1417	0.59	-0.8
1,448,173	+		GFF1417	0.59	-0.7
1,448,173	+		GFF1417	0.59	+0.9
1,448,173	+		GFF1417	0.59	-0.0
1,448,173	-		GFF1417	0.59	-1.3
1,448,175	+		GFF1417	0.59	-1.3
1,448,181	-		GFF1417	0.60	-0.9
1,448,181	-		GFF1417	0.60	-0.3
1,448,181	-		GFF1417	0.60	+0.3
1,448,181	-		GFF1417	0.60	-1.7
1,448,181	-		GFF1417	0.60	+0.6
1,448,184	+		GFF1417	0.60	-0.9
1,448,218	-		GFF1417	0.65	-2.0
1,448,219	+		GFF1417	0.65	-1.0
1,448,219	+		GFF1417	0.65	+0.7
1,448,219	+		GFF1417	0.65	-0.9
1,448,243	-		GFF1417	0.68	+1.4
1,448,249	-		GFF1417	0.69	+0.4
1,448,270	+		GFF1417	0.71	+0.8
1,448,288	-		GFF1417	0.74	-0.6
1,448,293	-		GFF1417	0.74	-0.4
1,448,314	+		GFF1417	0.77	-0.3
1,448,378	+		GFF1417	0.85	+0.9
1,448,400	-		GFF1417	0.88	+0.9
1,448,413	+		GFF1417	0.90	-1.6
1,448,433	+				-1.7
1,448,433	+				-0.1
1,448,467	+				+0.2
1,448,467	+				+0.9
1,448,475	-				-2.3
1,448,475	-				+0.4
1,448,488	+				+0.3
1,448,551	-		GFF1418	0.11	+0.6
1,448,582	+		GFF1418	0.18	-2.4
1,448,582	+		GFF1418	0.18	-0.2
1,448,590	-		GFF1418	0.20	-1.9
1,448,590	-		GFF1418	0.20	+0.3
1,448,592	+		GFF1418	0.20	+1.0
1,448,600	-		GFF1418	0.22	-0.4
1,448,602	+		GFF1418	0.22	-0.5
1,448,602	+		GFF1418	0.22	-0.7
1,448,602	+		GFF1418	0.22	+0.8
1,448,610	-		GFF1418	0.24	-0.5
1,448,617	+		GFF1418	0.26	-0.4
1,448,617	+		GFF1418	0.26	+0.3
1,448,625	-		GFF1418	0.27	+0.2
1,448,640	-		GFF1418	0.31	-2.0
1,448,652	+		GFF1418	0.33	+0.1
1,448,652	+		GFF1418	0.33	-0.5
1,448,670	+		GFF1418	0.37	+0.5
1,448,672	+		GFF1418	0.37	+0.2
1,448,680	-		GFF1418	0.39	-0.8
1,448,680	-		GFF1418	0.39	-1.6
1,448,696	+		GFF1418	0.43	-1.7
1,448,696	+		GFF1418	0.43	-0.5
1,448,696	+		GFF1418	0.43	-0.8
1,448,704	-		GFF1418	0.44	-0.4
1,448,713	+		GFF1418	0.46	-0.3
1,448,732	+		GFF1418	0.50	+0.1
1,448,732	+		GFF1418	0.50	+0.1
1,448,732	+		GFF1418	0.50	-0.1
1,448,733	+		GFF1418	0.51	+0.5
1,448,733	+		GFF1418	0.51	-1.9
1,448,737	+		GFF1418	0.51	-1.5
1,448,740	-		GFF1418	0.52	-0.4
1,448,740	-		GFF1418	0.52	+0.6
1,448,740	-		GFF1418	0.52	-0.3
1,448,741	-		GFF1418	0.52	+0.9
1,448,741	-		GFF1418	0.52	+0.8
1,448,741	-		GFF1418	0.52	-0.0
1,448,744	+		GFF1418	0.53	+1.5
1,448,749	+		GFF1418	0.54	-0.8
1,448,757	-		GFF1418	0.56	-0.0
1,448,808	+		GFF1418	0.67	-1.0
1,448,811	-		GFF1418	0.67	-0.1
1,448,816	-		GFF1418	0.68	-1.0
1,448,816	-		GFF1418	0.68	+0.3
1,448,816	-		GFF1418	0.68	-0.6
1,448,816	-		GFF1418	0.68	+0.8
1,448,818	+		GFF1418	0.69	-0.2
1,448,818	+		GFF1418	0.69	+1.5
1,448,818	+		GFF1418	0.69	-0.8
1,448,823	+		GFF1418	0.70	-1.9
1,448,844	+		GFF1418	0.74	-0.9
1,448,856	-		GFF1418	0.77	+0.9
1,448,861	+		GFF1418	0.78	-0.0
1,448,878	+		GFF1418	0.82	-1.3
1,448,911	-		GFF1418	0.89	-0.1
1,448,919	+				-1.6
1,448,927	-				-1.0
1,448,933	-				-2.0
1,448,935	+				-1.0
1,448,963	+				-2.0
1,448,997	+				-0.2
1,449,005	-				-1.3
1,449,006	+				+0.8
1,449,011	+				-0.4
1,449,011	+				-1.4
1,449,011	+				+1.3
1,449,011	+				-0.0
1,449,011	+				+0.6
1,449,011	+				+1.0
1,449,011	+				-1.2
1,449,012	+				+0.8
1,449,014	-				+1.9
1,449,014	-				-0.6
1,449,019	-				-0.9
1,449,019	-				+0.7
1,449,019	-				-1.7
1,449,019	-				-0.7
1,449,019	-				+0.0
1,449,019	-				+0.1
1,449,019	-				+1.5
1,449,032	-				-0.6
1,449,042	-				-0.1
1,449,044	-				-0.9
1,449,066	-				-2.4
1,449,074	-				-0.1
1,449,082	+				-0.1
1,449,093	+				+0.5
1,449,093	+				-1.9
1,449,101	-				-1.6
1,449,101	-				-1.8
1,449,101	-				+0.4
1,449,101	-				-0.6
1,449,101	-				+0.1
1,449,101	-				-0.5
1,449,101	-				+0.0
1,449,101	-				-2.0
1,449,106	-				+0.1
1,449,106	-				+0.6
1,449,120	+				-1.1
1,449,128	-				-0.6
1,449,130	-		GFF1419	0.10	+0.3
1,449,133	-		GFF1419	0.11	-1.0
1,449,149	-		GFF1419	0.12	+1.6
1,449,169	-		GFF1419	0.15	-0.0
1,449,179	+		GFF1419	0.16	-0.4
1,449,179	+		GFF1419	0.16	+1.3
1,449,184	+		GFF1419	0.16	+0.6
1,449,187	-		GFF1419	0.17	+0.1
1,449,187	-		GFF1419	0.17	-0.7
1,449,225	+		GFF1419	0.21	-0.0
1,449,225	+		GFF1419	0.21	-0.6
1,449,225	+		GFF1419	0.21	+0.4
1,449,225	+		GFF1419	0.21	-1.4
1,449,225	+		GFF1419	0.21	-0.3
1,449,225	+		GFF1419	0.21	-0.3
1,449,225	+		GFF1419	0.21	-0.5
1,449,230	+		GFF1419	0.22	-1.3
1,449,233	-		GFF1419	0.22	+0.6
1,449,233	-		GFF1419	0.22	+0.1
1,449,233	-		GFF1419	0.22	+1.5
1,449,233	-		GFF1419	0.22	-1.1
1,449,233	-		GFF1419	0.22	-0.0
1,449,233	-		GFF1419	0.22	-2.0
1,449,233	-		GFF1419	0.22	-2.8
1,449,233	-		GFF1419	0.22	+0.0
1,449,233	-		GFF1419	0.22	+1.0
1,449,233	-		GFF1419	0.22	+0.7
1,449,233	-		GFF1419	0.22	+0.1
1,449,238	-		GFF1419	0.23	-0.8
1,449,238	-		GFF1419	0.23	+0.7
1,449,238	-		GFF1419	0.23	+1.5
1,449,238	-		GFF1419	0.23	-0.5
1,449,244	+		GFF1419	0.23	-0.3
1,449,264	+		GFF1419	0.26	-0.9
1,449,264	+		GFF1419	0.26	-0.9
1,449,264	+		GFF1419	0.26	+0.3
1,449,272	-		GFF1419	0.27	+0.1
1,449,277	-		GFF1419	0.27	-0.7
1,449,279	+		GFF1419	0.27	+0.3
1,449,279	+		GFF1419	0.27	-0.7
1,449,287	-		GFF1419	0.28	+0.2
1,449,287	-		GFF1419	0.28	-1.6
1,449,289	-		GFF1419	0.29	-0.7
1,449,289	-		GFF1419	0.29	+0.9
1,449,289	-		GFF1419	0.29	-0.4
1,449,295	+		GFF1419	0.29	+0.4
1,449,300	+		GFF1419	0.30	+0.9
1,449,308	-		GFF1419	0.31	-0.3
1,449,308	-		GFF1419	0.31	-0.8
1,449,317	-		GFF1419	0.32	+1.4
1,449,319	-		GFF1419	0.32	+0.8
1,449,331	-		GFF1419	0.33	-0.2
1,449,352	+		GFF1419	0.36	-0.9
1,449,352	+		GFF1419	0.36	-0.7
1,449,352	+		GFF1419	0.36	-0.1
1,449,352	+		GFF1419	0.36	-0.4
1,449,360	-		GFF1419	0.37	-0.8
1,449,360	-		GFF1419	0.37	-0.8
1,449,360	-		GFF1419	0.37	+0.3
1,449,360	-		GFF1419	0.37	+0.4
1,449,360	-		GFF1419	0.37	-0.0
1,449,404	+		GFF1419	0.42	-2.0
1,449,432	-		GFF1419	0.45	+1.1
1,449,432	-		GFF1419	0.45	+0.2
1,449,440	+		GFF1419	0.46	-1.7
1,449,448	-		GFF1419	0.47	+0.2
1,449,474	-		GFF1419	0.50	-0.8
1,449,485	-		GFF1419	0.51	-0.4
1,449,508	+		GFF1419	0.54	-2.7
1,449,513	+		GFF1419	0.55	-1.0
1,449,521	-		GFF1419	0.55	-2.1
1,449,530	+		GFF1419	0.56	-0.4
1,449,534	-		GFF1419	0.57	-0.1
1,449,534	-		GFF1419	0.57	-1.0
1,449,538	-		GFF1419	0.57	-1.0
1,449,555	-		GFF1419	0.59	-0.6
1,449,557	+		GFF1419	0.60	+2.1
1,449,557	+		GFF1419	0.60	-0.1
1,449,557	+		GFF1419	0.60	-0.4
1,449,560	-		GFF1419	0.60	-1.9
1,449,561	-		GFF1419	0.60	+0.5
1,449,565	-		GFF1419	0.61	-0.2
1,449,565	-		GFF1419	0.61	+0.1
1,449,565	-		GFF1419	0.61	-0.2
1,449,580	+		GFF1419	0.62	-0.8
1,449,597	+		GFF1419	0.64	+0.7
1,449,603	-		GFF1419	0.65	+0.7
1,449,622	+		GFF1419	0.67	+0.3
1,449,626	-		GFF1419	0.68	+0.2
1,449,648	-		GFF1419	0.70	-1.2
1,449,648	-		GFF1419	0.70	-1.0
1,449,659	+		GFF1419	0.71	-0.8
1,449,664	+		GFF1419	0.72	+0.0
1,449,672	-		GFF1419	0.73	+0.8
1,449,672	-		GFF1419	0.73	+1.1
1,449,686	-		GFF1419	0.75	+0.4
1,449,717	-		GFF1419	0.78	+0.8
1,449,717	-		GFF1419	0.78	-0.9
1,449,739	-		GFF1419	0.81	-0.2
1,449,749	+		GFF1419	0.82	-0.1
1,449,760	+		GFF1419	0.83	-1.5
1,449,783	-		GFF1419	0.86	-1.6
1,449,790	+		GFF1419	0.87	-0.8
1,449,807	+		GFF1419	0.89	-0.3
1,449,807	+		GFF1419	0.89	-1.9
1,449,808	+		GFF1419	0.89	-1.2
1,449,808	+		GFF1419	0.89	-1.9
1,449,808	+		GFF1419	0.89	-0.9
1,449,816	-		GFF1419	0.90	-0.7
1,449,816	-		GFF1419	0.90	-1.7
1,449,816	-		GFF1419	0.90	-0.2
1,449,816	-		GFF1419	0.90	-0.2
1,449,823	-				-0.4
1,449,826	-				-1.9
1,449,828	+				+0.1
1,449,859	+				-1.9
1,449,859	+				-0.7
1,449,860	+				+0.4
1,449,861	-				-0.3
1,449,867	-				-0.2
1,449,878	+				-0.0
1,449,890	-				-0.3
1,449,896	-				-1.0
1,449,918	+				-0.5
1,449,929	+				-0.0
1,449,938	+				-0.5
1,449,938	+				-2.2
1,449,946	-				-0.1
1,449,960	+				-1.3
1,449,964	-				-0.3
1,449,965	+				-1.2
1,449,965	+				-1.6
1,449,973	-				-1.0
1,449,973	-				-2.0
1,449,973	-				-0.5
1,449,973	-				-0.2
1,449,973	-				-1.4
1,449,973	-				-2.6
1,449,982	+				-0.4
1,449,983	+				+1.2
1,449,987	+				+0.3
1,450,001	-				-0.4
1,450,033	+				-1.0
1,450,035	+				-0.9
1,450,041	+				-0.9
1,450,041	+				+0.0
1,450,041	+				-0.4
1,450,045	+				-2.9
1,450,049	-				+0.4
1,450,091	+		GFF1420	0.18	-0.2
1,450,091	+		GFF1420	0.18	-0.9
1,450,094	-		GFF1420	0.18	-1.3
1,450,094	-		GFF1420	0.18	+0.6
1,450,094	-		GFF1420	0.18	+0.4
1,450,099	-		GFF1420	0.19	+0.1
1,450,099	-		GFF1420	0.19	+0.1
1,450,108	+		GFF1420	0.21	+0.4
1,450,111	-		GFF1420	0.22	+0.1
1,450,131	-		GFF1420	0.26	-2.8
1,450,151	+		GFF1420	0.29	-2.0
1,450,152	-		GFF1420	0.30	-1.9
1,450,159	-		GFF1420	0.31	-0.8
1,450,161	+		GFF1420	0.31	-0.4
1,450,169	-		GFF1420	0.33	+0.7
1,450,179	+		GFF1420	0.35	-0.2
1,450,196	+		GFF1420	0.38	-1.6
1,450,196	+		GFF1420	0.38	-0.7
1,450,196	+		GFF1420	0.38	-0.3
1,450,196	+		GFF1420	0.38	-0.5
1,450,196	+		GFF1420	0.38	-0.3
1,450,196	+		GFF1420	0.38	+0.8
1,450,196	+		GFF1420	0.38	-0.2
1,450,204	-		GFF1420	0.40	-0.3
1,450,204	-		GFF1420	0.40	-0.7
1,450,204	-		GFF1420	0.40	-0.2
1,450,204	-		GFF1420	0.40	-0.3
1,450,204	-		GFF1420	0.40	+0.8
1,450,221	+		GFF1420	0.43	-0.5
1,450,221	+		GFF1420	0.43	+0.1
1,450,229	-		GFF1420	0.45	+0.5
1,450,249	-		GFF1420	0.48	-2.4
1,450,253	+		GFF1420	0.49	+1.0
1,450,253	+		GFF1420	0.49	-2.3
1,450,308	-		GFF1420	0.60	+0.4
1,450,314	+		GFF1420	0.61	-1.4
1,450,314	+		GFF1420	0.61	+0.1
1,450,322	-		GFF1420	0.63	-1.3
1,450,322	-		GFF1420	0.63	-0.3
1,450,354	-		GFF1420	0.69	-0.3
1,450,367	+		GFF1420	0.71	-1.7
1,450,367	+		GFF1420	0.71	-0.4
1,450,367	+		GFF1420	0.71	+1.1
1,450,367	+		GFF1420	0.71	-2.1
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