Strain Fitness in Sphingobium sp. HT1-2 around GFF1348

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,367,701	+		GFF1345	0.35	-0.8
1,367,742	+		GFF1345	0.49	+0.4
1,367,750	-		GFF1345	0.52	-0.7
1,367,750	-		GFF1345	0.52	+0.9
1,367,805	-		GFF1345	0.70	+0.6
1,367,815	-		GFF1345	0.73	-0.0
1,367,828	-		GFF1345	0.78	+0.2
1,367,863	-		GFF1345	0.89	-2.4
1,367,863	-		GFF1345	0.89	-0.0
1,367,880	+				-0.4
1,367,886	+				-0.1
1,367,938	-		GFF1346	0.13	-0.5
1,367,941	+		GFF1346	0.13	-0.2
1,367,941	+		GFF1346	0.13	+1.0
1,367,941	+		GFF1346	0.13	+0.1
1,367,941	+		GFF1346	0.13	-3.1
1,367,941	+		GFF1346	0.13	+0.9
1,367,949	-		GFF1346	0.15	+0.6
1,367,957	+		GFF1346	0.18	+0.0
1,367,979	+		GFF1346	0.23	+1.1
1,367,979	+		GFF1346	0.23	+2.3
1,367,979	+		GFF1346	0.23	-1.4
1,367,992	+		GFF1346	0.27	-0.8
1,368,006	-		GFF1346	0.31	+0.4
1,368,006	-		GFF1346	0.31	+0.4
1,368,010	+		GFF1346	0.32	+0.4
1,368,010	+		GFF1346	0.32	-1.7
1,368,010	+		GFF1346	0.32	-1.6
1,368,018	+		GFF1346	0.34	-0.1
1,368,018	-		GFF1346	0.34	+0.7
1,368,018	-		GFF1346	0.34	+0.6
1,368,050	+		GFF1346	0.42	-0.4
1,368,050	+		GFF1346	0.42	-1.8
1,368,050	+		GFF1346	0.42	+0.6
1,368,050	-		GFF1346	0.42	+0.5
1,368,056	-		GFF1346	0.44	-0.6
1,368,057	+		GFF1346	0.44	-0.7
1,368,058	-		GFF1346	0.45	+0.7
1,368,064	-		GFF1346	0.46	-2.4
1,368,083	-		GFF1346	0.51	-0.1
1,368,115	+		GFF1346	0.60	-1.3
1,368,115	+		GFF1346	0.60	+0.1
1,368,115	+		GFF1346	0.60	+1.0
1,368,123	-		GFF1346	0.62	+0.7
1,368,127	+		GFF1346	0.63	-1.1
1,368,129	-		GFF1346	0.63	-0.4
1,368,135	-		GFF1346	0.65	-1.3
1,368,135	-		GFF1346	0.65	-0.2
1,368,135	-		GFF1346	0.65	-0.2
1,368,135	-		GFF1346	0.65	+0.1
1,368,135	-		GFF1346	0.65	-0.8
1,368,136	-		GFF1346	0.65	-0.6
1,368,138	+		GFF1346	0.66	-0.4
1,368,138	+		GFF1346	0.66	-0.9
1,368,138	+		GFF1346	0.66	-0.8
1,368,138	+		GFF1346	0.66	-0.0
1,368,146	-		GFF1346	0.68	+0.3
1,368,146	-		GFF1346	0.68	-1.0
1,368,146	-		GFF1346	0.68	-0.4
1,368,193	+		GFF1346	0.81	-0.4
1,368,198	-		GFF1346	0.82	-0.1
1,368,201	-		GFF1346	0.83	+1.3
1,368,201	-		GFF1346	0.83	-1.0
1,368,211	-		GFF1346	0.85	-0.7
1,368,239	+				-0.3
1,368,244	+				-1.9
1,368,244	+				-0.2
1,368,252	-				-0.5
1,368,254	+				-1.9
1,368,254	+				-0.2
1,368,254	+				+0.1
1,368,267	+				-0.0
1,368,267	-				-1.4
1,368,301	+				+0.3
1,368,301	+				-0.6
1,368,301	+				-1.3
1,368,306	+				+0.7
1,368,313	-		GFF1347	0.11	+0.7
1,368,314	-		GFF1347	0.11	-1.1
1,368,314	-		GFF1347	0.11	-1.6
1,368,314	-		GFF1347	0.11	-0.9
1,368,314	-		GFF1347	0.11	+0.3
1,368,320	-		GFF1347	0.13	+0.0
1,368,329	-		GFF1347	0.15	+0.1
1,368,336	+		GFF1347	0.17	+1.7
1,368,350	+		GFF1347	0.20	+1.1
1,368,372	+		GFF1347	0.26	-1.1
1,368,378	+		GFF1347	0.27	+1.4
1,368,380	-		GFF1347	0.28	+1.2
1,368,403	+		GFF1347	0.34	-1.4
1,368,410	+		GFF1347	0.35	-0.4
1,368,411	-		GFF1347	0.36	+1.0
1,368,411	-		GFF1347	0.36	+0.2
1,368,411	-		GFF1347	0.36	+0.1
1,368,411	-		GFF1347	0.36	+0.2
1,368,411	-		GFF1347	0.36	+0.0
1,368,418	-		GFF1347	0.37	-1.9
1,368,445	+		GFF1347	0.44	-1.5
1,368,445	+		GFF1347	0.44	-1.9
1,368,452	+		GFF1347	0.46	-0.1
1,368,459	+		GFF1347	0.48	-0.8
1,368,464	+		GFF1347	0.49	+0.5
1,368,464	+		GFF1347	0.49	-0.2
1,368,464	+		GFF1347	0.49	+0.2
1,368,464	+		GFF1347	0.49	-0.6
1,368,472	-		GFF1347	0.51	-0.2
1,368,472	-		GFF1347	0.51	+0.3
1,368,472	-		GFF1347	0.51	+0.1
1,368,472	-		GFF1347	0.51	+1.1
1,368,472	-		GFF1347	0.51	-0.9
1,368,472	-		GFF1347	0.51	+0.1
1,368,495	+		GFF1347	0.57	-0.5
1,368,520	-		GFF1347	0.63	-1.8
1,368,535	+		GFF1347	0.67	+1.0
1,368,535	+		GFF1347	0.67	-0.9
1,368,538	-		GFF1347	0.67	+0.6
1,368,543	-		GFF1347	0.69	+0.4
1,368,568	+		GFF1347	0.75	-2.5
1,368,568	+		GFF1347	0.75	-0.8
1,368,576	-		GFF1347	0.77	-0.9
1,368,583	-		GFF1347	0.79	+0.6
1,368,588	-		GFF1347	0.80	-0.1
1,368,633	-				+0.9
1,368,633	-				-2.5
1,368,633	-				-0.3
1,368,641	+				+0.6
1,368,646	+				+0.3
1,368,646	+				-0.2
1,368,646	+				+0.0
1,368,649	-				+1.2
1,368,649	-				-0.2
1,368,649	-				+0.0
1,368,649	-				-0.8
1,368,654	-				+0.0
1,368,654	-				+0.6
1,368,654	-				-1.7
1,368,654	-				+0.4
1,368,654	-				+1.1
1,368,654	-				-1.7
1,368,654	-				-0.9
1,368,658	-				-1.0
1,368,660	+				-0.6
1,368,664	-				-2.0
1,368,665	-				+1.0
1,368,668	-				-0.4
1,368,668	-				+1.1
1,368,669	+				+0.8
1,368,669	+				-1.8
1,368,678	+				+0.2
1,368,679	+				+0.4
1,368,682	-				+1.1
1,368,682	-				-0.4
1,368,691	-				-0.2
1,368,701	+		GFF1348	0.11	-0.3
1,368,715	+		GFF1348	0.19	-3.1
1,368,735	+		GFF1348	0.32	-0.7
1,368,735	+		GFF1348	0.32	-2.8
1,368,735	+		GFF1348	0.32	+0.3
1,368,735	+		GFF1348	0.32	+0.1
1,368,735	+		GFF1348	0.32	-0.3
1,368,735	+		GFF1348	0.32	-1.3
1,368,744	-		GFF1348	0.37	-1.2
1,368,784	+		GFF1348	0.61	-0.9
1,368,795	-		GFF1348	0.68	-0.4
1,368,823	-		GFF1348	0.85	-0.7
1,368,823	-		GFF1348	0.85	-1.8
1,368,848	+				+0.3
1,368,895	-				+0.9
1,368,974	-				-0.9
1,368,984	-				-0.1
1,368,992	-				-0.3
1,369,014	+				-2.1
1,369,099	-				+0.7
1,369,103	+				+0.0
1,369,108	+				+1.1
1,369,224	-				-1.6
1,369,224	-				+0.4
1,369,332	+				-1.9
1,369,352	+				-1.7
1,369,360	-				+0.3
1,369,363	-				+0.4
1,369,382	+				-1.3
1,369,396	+				-0.8
1,369,411	-				+1.1
1,369,413	+				+0.8
1,369,418	+				-0.7
1,369,418	+				+0.2
1,369,418	+				-2.1
1,369,418	+				+0.2
1,369,421	-				+0.9
1,369,421	-				+0.1
1,369,421	-				-0.4
1,369,426	-				-1.1
1,369,426	-				-0.4
1,369,433	+				+1.0
1,369,440	+				+1.3
1,369,440	+				-0.5
1,369,441	-				-0.8
1,369,452	+				-1.4
1,369,460	-				-0.4
1,369,462	+				+0.0
1,369,464	+				+0.3
1,369,468	-				-0.3
1,369,474	+				-1.3
1,369,490	+				+0.8
1,369,497	+				-0.6
1,369,507	+				-1.1
1,369,509	-				-0.1
1,369,530	+				-0.7
1,369,546	+				-0.3
1,369,558	+				+0.6
1,369,563	+				+0.2
1,369,566	-				+0.7
1,369,566	-				-0.7
1,369,566	-				+0.7
1,369,582	-				+0.2
1,369,585	-				+0.1
1,369,592	-				-0.5
1,369,594	+				-0.3
1,369,594	+				-0.1
1,369,602	-		GFF1349	0.11	-1.1
1,369,602	-		GFF1349	0.11	-0.4
1,369,610	-		GFF1349	0.12	-1.3
1,369,637	+		GFF1349	0.17	-1.3
1,369,656	-		GFF1349	0.20	-0.3
1,369,659	+		GFF1349	0.21	-0.8
1,369,664	+		GFF1349	0.22	-2.9
1,369,666	+		GFF1349	0.22	-1.2
1,369,677	-		GFF1349	0.24	+0.2
1,369,692	-		GFF1349	0.27	-1.3
1,369,751	+		GFF1349	0.37	-0.6
1,369,751	+		GFF1349	0.37	-2.3
1,369,754	-		GFF1349	0.38	-2.2
1,369,767	+		GFF1349	0.40	-0.4
1,369,767	+		GFF1349	0.40	-0.3
1,369,767	+		GFF1349	0.40	-1.4
1,369,775	-		GFF1349	0.41	+1.2
1,369,812	+		GFF1349	0.48	+0.6
1,369,820	-		GFF1349	0.49	-0.1
1,369,820	-		GFF1349	0.49	-1.0
1,369,820	-		GFF1349	0.49	+0.3
1,369,820	-		GFF1349	0.49	-0.5
1,369,830	-		GFF1349	0.51	-0.8