Strain Fitness in Sphingobium sp. HT1-2 around GFF1334

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,358,979	+				-0.5
1,358,979	+				-1.2
1,358,988	-				-0.4
1,358,988	-				+0.6
1,358,990	-				-1.1
1,359,023	-				+0.4
1,359,026	+				+1.3
1,359,035	+				-0.0
1,359,035	+				-1.1
1,359,035	+				-0.3
1,359,048	-				-0.1
1,359,050	-				+0.3
1,359,053	+				-1.3
1,359,053	+				-1.2
1,359,061	-				-1.6
1,359,061	-				-0.6
1,359,072	-				-1.1
1,359,076	+				-1.4
1,359,076	+				+0.8
1,359,076	-				-0.1
1,359,084	-				-1.6
1,359,084	-				+0.1
1,359,089	-				+0.3
1,359,091	+				-0.6
1,359,167	+				-1.9
1,359,168	-				+1.7
1,359,188	-				-1.2
1,359,193	+				+0.4
1,359,193	+				+1.3
1,359,195	+				-2.5
1,359,200	+				+1.1
1,359,200	+				-0.4
1,359,207	+				+1.3
1,359,207	+				-0.3
1,359,207	+				-0.1
1,359,208	-				-0.7
1,359,208	-				+0.3
1,359,208	-				-3.1
1,359,213	+				+0.9
1,359,213	-				-0.9
1,359,215	-				-0.4
1,359,215	-				+0.1
1,359,218	+		GFF1332	0.10	-0.6
1,359,226	-		GFF1332	0.13	-1.7
1,359,226	-		GFF1332	0.13	+0.0
1,359,245	+		GFF1332	0.19	-0.7
1,359,246	-		GFF1332	0.20	-0.6
1,359,246	-		GFF1332	0.20	-2.3
1,359,252	+		GFF1332	0.22	+0.2
1,359,253	-		GFF1332	0.22	-0.4
1,359,255	-		GFF1332	0.23	-1.2
1,359,258	+		GFF1332	0.24	+1.9
1,359,287	+		GFF1332	0.34	+0.7
1,359,299	+		GFF1332	0.38	+1.0
1,359,307	+		GFF1332	0.41	-0.6
1,359,307	-		GFF1332	0.41	-0.8
1,359,315	-		GFF1332	0.44	-0.9
1,359,317	+		GFF1332	0.44	-0.9
1,359,345	+		GFF1332	0.54	-0.3
1,359,367	+		GFF1332	0.62	-1.0
1,359,373	-		GFF1332	0.64	+0.7
1,359,375	-		GFF1332	0.65	+0.3
1,359,376	+		GFF1332	0.65	-0.3
1,359,378	+		GFF1332	0.66	-0.4
1,359,470	+				+0.6
1,359,486	+				+1.0
1,359,487	+				-0.6
1,359,978	+				-0.7
1,359,981	-				-0.4
1,359,986	-				-1.9
1,359,986	-				-0.8
1,360,003	+				-0.4
1,360,003	+				+0.7
1,360,003	+				-1.6
1,360,003	+				-0.0
1,360,003	+				-0.8
1,360,003	+				-1.3
1,360,003	+				-2.5
1,360,011	-				-0.4
1,360,011	-				-1.6
1,360,011	-				-0.7
1,360,011	-				+1.2
1,360,011	-				-0.8
1,360,011	-				-2.4
1,360,013	+				-1.4
1,360,013	+				+0.8
1,360,018	+				-0.6
1,360,018	+				-0.3
1,360,018	+				+1.1
1,360,018	+				+0.4
1,360,021	-				+0.3
1,360,021	-				-1.4
1,360,021	-				+0.4
1,360,021	-				-0.1
1,360,026	-				+0.2
1,360,026	-				+0.1
1,360,026	-				-1.7
1,360,026	-				-0.1
1,360,039	+		GFF1334	0.11	+1.0
1,360,039	+		GFF1334	0.11	-0.6
1,360,039	+		GFF1334	0.11	+0.4
1,360,040	+		GFF1334	0.11	-1.3
1,360,047	-		GFF1334	0.12	+0.9
1,360,047	-		GFF1334	0.12	+0.6
1,360,049	+		GFF1334	0.12	-1.0
1,360,057	-		GFF1334	0.13	-0.7
1,360,057	-		GFF1334	0.13	-0.0
1,360,066	-		GFF1334	0.15	+0.2
1,360,076	+		GFF1334	0.17	-1.1
1,360,092	-		GFF1334	0.19	+0.1
1,360,092	-		GFF1334	0.19	-1.6
1,360,116	-		GFF1334	0.23	+0.5
1,360,118	+		GFF1334	0.23	-0.7
1,360,118	+		GFF1334	0.23	+0.4
1,360,118	+		GFF1334	0.23	+0.5
1,360,118	+		GFF1334	0.23	-0.1
1,360,118	+		GFF1334	0.23	+0.7
1,360,118	+		GFF1334	0.23	-1.5
1,360,118	+		GFF1334	0.23	-2.4
1,360,118	+		GFF1334	0.23	+0.6
1,360,118	+		GFF1334	0.23	+0.2
1,360,118	+		GFF1334	0.23	+0.4
1,360,118	+		GFF1334	0.23	+0.2
1,360,118	+		GFF1334	0.23	+0.1
1,360,126	-		GFF1334	0.24	+0.3
1,360,126	-		GFF1334	0.24	-0.0
1,360,126	-		GFF1334	0.24	-2.1
1,360,126	-		GFF1334	0.24	+1.4
1,360,126	-		GFF1334	0.24	-0.1
1,360,126	-		GFF1334	0.24	+1.1
1,360,137	-		GFF1334	0.26	-0.5
1,360,137	-		GFF1334	0.26	-0.6
1,360,145	+		GFF1334	0.27	-0.7
1,360,152	-		GFF1334	0.29	-0.2
1,360,153	-		GFF1334	0.29	+2.1
1,360,153	-		GFF1334	0.29	-0.4
1,360,162	-		GFF1334	0.30	-1.0
1,360,218	-		GFF1334	0.39	-0.3
1,360,254	+		GFF1334	0.45	+0.5
1,360,254	+		GFF1334	0.45	-1.8
1,360,254	+		GFF1334	0.45	+0.7
1,360,262	-		GFF1334	0.46	-0.4
1,360,262	-		GFF1334	0.46	-2.8
1,360,262	-		GFF1334	0.46	-0.0
1,360,262	-		GFF1334	0.46	-1.5
1,360,263	+		GFF1334	0.46	+0.4
1,360,269	-		GFF1334	0.47	+0.1
1,360,271	-		GFF1334	0.47	-0.1
1,360,274	+		GFF1334	0.48	+1.5
1,360,274	+		GFF1334	0.48	-2.9
1,360,274	+		GFF1334	0.48	-0.2
1,360,274	+		GFF1334	0.48	+0.6
1,360,274	+		GFF1334	0.48	+1.7
1,360,279	+		GFF1334	0.49	-1.5
1,360,279	+		GFF1334	0.49	-1.3
1,360,279	+		GFF1334	0.49	-1.6
1,360,279	+		GFF1334	0.49	+0.7
1,360,282	-		GFF1334	0.49	-1.0
1,360,282	-		GFF1334	0.49	-1.5
1,360,282	-		GFF1334	0.49	+0.2
1,360,282	-		GFF1334	0.49	-1.9
1,360,282	-		GFF1334	0.49	+0.1
1,360,282	-		GFF1334	0.49	-1.1
1,360,282	-		GFF1334	0.49	-0.3
1,360,282	-		GFF1334	0.49	-0.7
1,360,298	-		GFF1334	0.52	-2.0
1,360,298	-		GFF1334	0.52	+1.1
1,360,313	-		GFF1334	0.54	-0.1
1,360,315	+		GFF1334	0.54	+1.0
1,360,330	+		GFF1334	0.57	-1.2
1,360,331	-		GFF1334	0.57	-1.0
1,360,350	-		GFF1334	0.60	+1.7
1,360,354	+		GFF1334	0.61	-0.5
1,360,357	-		GFF1334	0.61	+0.4
1,360,362	-		GFF1334	0.62	-1.8
1,360,372	-		GFF1334	0.63	-0.4
1,360,403	+		GFF1334	0.68	-1.8
1,360,403	+		GFF1334	0.68	+1.8
1,360,409	+		GFF1334	0.69	-0.9
1,360,410	+		GFF1334	0.70	+0.4
1,360,410	+		GFF1334	0.70	+0.7
1,360,411	-		GFF1334	0.70	-0.8
1,360,411	-		GFF1334	0.70	-1.8
1,360,411	-		GFF1334	0.70	+0.3
1,360,417	-		GFF1334	0.71	+1.0
1,360,418	-		GFF1334	0.71	-0.1
1,360,418	-		GFF1334	0.71	-1.1
1,360,425	+		GFF1334	0.72	-0.2
1,360,441	+		GFF1334	0.74	-0.0
1,360,441	+		GFF1334	0.74	-0.4
1,360,449	-		GFF1334	0.76	-0.0
1,360,481	-		GFF1334	0.81	+0.1
1,360,487	+		GFF1334	0.82	-0.1
1,360,551	+				-0.4
1,360,562	+				+0.7
1,360,562	+				-1.0
1,360,562	+				-0.9
1,360,562	+				-0.3
1,360,570	+				-0.4
1,360,570	-				+0.8
1,360,570	-				-0.4
1,360,570	-				-0.2
1,360,619	+				-1.6
1,360,648	-				-0.4
1,360,688	+				-0.7
1,360,728	-				-0.0
1,360,728	-				-1.4
1,360,782	+		GFF1335	0.26	-0.1
1,360,782	+		GFF1335	0.26	-0.4
1,360,787	+		GFF1335	0.28	-1.2
1,360,795	-		GFF1335	0.31	+0.6
1,360,806	+		GFF1335	0.36	-1.3
1,360,812	+		GFF1335	0.39	-0.9
1,360,812	+		GFF1335	0.39	+0.0
1,360,822	+		GFF1335	0.43	-0.3
1,360,822	+		GFF1335	0.43	+0.5
1,360,822	+		GFF1335	0.43	+0.9
1,360,822	+		GFF1335	0.43	-0.6
1,360,822	+		GFF1335	0.43	-0.8
1,360,822	+		GFF1335	0.43	+0.1
1,360,822	+		GFF1335	0.43	-1.6
1,360,822	+		GFF1335	0.43	-0.1
1,360,824	+		GFF1335	0.44	-1.6
1,360,830	-		GFF1335	0.46	-0.8
1,360,830	-		GFF1335	0.46	-0.9
1,360,830	-		GFF1335	0.46	-1.2
1,360,830	-		GFF1335	0.46	-0.6
1,360,830	-		GFF1335	0.46	-0.7
1,360,830	-		GFF1335	0.46	+0.9
1,360,830	-		GFF1335	0.46	-0.4
1,360,830	-		GFF1335	0.46	-0.7
1,360,830	-		GFF1335	0.46	+0.2
1,360,841	+		GFF1335	0.51	-0.8
1,360,841	+		GFF1335	0.51	+0.0
1,360,841	+		GFF1335	0.51	+0.5
1,360,842	-		GFF1335	0.52	-1.2
1,360,843	-		GFF1335	0.52	-0.3
1,360,844	-		GFF1335	0.52	-1.3
1,360,844	-		GFF1335	0.52	+0.7
1,360,847	-		GFF1335	0.54	-0.3
1,360,849	-		GFF1335	0.55	+0.8
1,360,889	-		GFF1335	0.72	-0.4
1,360,898	+		GFF1335	0.76	+0.3
1,360,906	-		GFF1335	0.79	-1.0
1,360,906	-		GFF1335	0.79	-0.1
1,360,913	+		GFF1335	0.82	-0.3
1,360,913	+		GFF1335	0.82	-0.0
1,360,913	+		GFF1335	0.82	-0.2
1,360,913	+		GFF1335	0.82	-0.9
1,360,914	-		GFF1335	0.83	+0.8
1,360,921	-		GFF1335	0.86	+0.0
1,360,921	-		GFF1335	0.86	-0.0
1,360,921	-		GFF1335	0.86	+0.2
1,360,921	-		GFF1335	0.86	+0.5
1,360,921	-		GFF1335	0.86	-1.3
1,360,921	-		GFF1335	0.86	+0.8
1,360,938	-				-1.9
1,360,949	+				-0.4
1,360,949	+				+0.6
1,360,951	+				-0.3
1,360,957	-				-0.1
1,360,959	-				-0.0
1,360,985	+				+0.4
1,360,987	-				+0.7
1,361,008	-				+0.0
1,361,061	+		GFF1336	0.17	+2.0
1,361,066	+		GFF1336	0.18	-0.1
1,361,086	+		GFF1336	0.22	+0.3
1,361,086	+		GFF1336	0.22	-1.0
1,361,086	+		GFF1336	0.22	-0.7
1,361,094	-		GFF1336	0.23	+0.3
1,361,094	-		GFF1336	0.23	-0.6
1,361,094	-		GFF1336	0.23	-0.5
1,361,094	-		GFF1336	0.23	-1.5
1,361,094	-		GFF1336	0.23	+0.2
1,361,102	-		GFF1336	0.25	+0.6
1,361,102	-		GFF1336	0.25	-0.8
1,361,109	+		GFF1336	0.26	+1.3
1,361,109	+		GFF1336	0.26	+0.1
1,361,109	+		GFF1336	0.26	-0.9
1,361,109	+		GFF1336	0.26	+0.5
1,361,109	+		GFF1336	0.26	+0.6
1,361,117	+		GFF1336	0.28	-0.1
1,361,117	+		GFF1336	0.28	+0.1
1,361,117	-		GFF1336	0.28	-0.5
1,361,117	-		GFF1336	0.28	+0.1
1,361,119	+		GFF1336	0.28	+0.7
1,361,125	-		GFF1336	0.29	-0.4
1,361,125	-		GFF1336	0.29	-0.0
1,361,125	-		GFF1336	0.29	-0.3
1,361,125	-		GFF1336	0.29	+0.2
1,361,167	+		GFF1336	0.37	-0.6
1,361,174	+		GFF1336	0.38	-2.1
1,361,175	-		GFF1336	0.39	-0.1
1,361,180	+		GFF1336	0.40	+1.4
1,361,180	+		GFF1336	0.40	+0.3
1,361,180	+		GFF1336	0.40	-0.3
1,361,180	+		GFF1336	0.40	-0.4
1,361,180	+		GFF1336	0.40	-0.8
1,361,180	+		GFF1336	0.40	-2.4
1,361,188	-		GFF1336	0.41	-1.1
1,361,188	-		GFF1336	0.41	-0.6
1,361,188	-		GFF1336	0.41	-0.3
1,361,198	+		GFF1336	0.43	-0.5
1,361,206	-		GFF1336	0.44	+0.1
1,361,211	-		GFF1336	0.45	-3.3
1,361,211	-		GFF1336	0.45	+0.1
1,361,216	-		GFF1336	0.46	-0.4
1,361,216	-		GFF1336	0.46	+0.8
1,361,216	-		GFF1336	0.46	-0.1
1,361,230	+		GFF1336	0.49	+0.4
1,361,231	-		GFF1336	0.49	-0.3
1,361,238	-		GFF1336	0.50	-0.6
1,361,238	-		GFF1336	0.50	-1.3
1,361,240	+		GFF1336	0.51	-1.6
1,361,240	+		GFF1336	0.51	-1.4
1,361,240	+		GFF1336	0.51	-3.1
1,361,240	+		GFF1336	0.51	-1.6
1,361,240	+		GFF1336	0.51	-0.7
1,361,240	+		GFF1336	0.51	+1.0
1,361,248	-		GFF1336	0.52	-1.0
1,361,248	-		GFF1336	0.52	-0.7
1,361,248	-		GFF1336	0.52	-0.1
1,361,249	+		GFF1336	0.52	-1.0
1,361,254	+		GFF1336	0.53	+0.7
1,361,262	+		GFF1336	0.55	-1.2
1,361,267	+		GFF1336	0.56	-1.2
1,361,267	+		GFF1336	0.56	+0.6
1,361,267	+		GFF1336	0.56	+1.0
1,361,267	+		GFF1336	0.56	-0.9
1,361,280	+		GFF1336	0.58	+0.1
1,361,314	+		GFF1336	0.65	-0.0
1,361,317	-		GFF1336	0.65	-1.3
1,361,323	+		GFF1336	0.66	-0.5
1,361,323	+		GFF1336	0.66	+0.8
1,361,323	+		GFF1336	0.66	+0.6
1,361,323	+		GFF1336	0.66	-0.3
1,361,325	+		GFF1336	0.67	-3.0
1,361,325	+		GFF1336	0.67	+0.3
1,361,329	-		GFF1336	0.67	+0.4
1,361,331	-		GFF1336	0.68	+0.1
1,361,348	+		GFF1336	0.71	-0.3
1,361,381	-		GFF1336	0.77	-2.2
1,361,391	+		GFF1336	0.79	+1.1
1,361,392	+		GFF1336	0.79	-0.2
1,361,399	-		GFF1336	0.81	+0.5
1,361,399	-		GFF1336	0.81	+0.6
1,361,418	-		GFF1336	0.84	-0.1
1,361,433	+		GFF1336	0.87	-0.2
1,361,433	+		GFF1336	0.87	+0.6
1,361,433	+		GFF1336	0.87	-0.7
1,361,438	+		GFF1336	0.88	-0.9
1,361,440	+		GFF1336	0.88	+0.4
1,361,441	-		GFF1336	0.88	-0.6
1,361,448	+		GFF1336	0.90	+0.2
1,361,448	+		GFF1336	0.90	-0.5
1,361,456	-				-0.9
1,361,456	-				+1.0
1,361,470	+				-0.9
1,361,470	+				+0.1
1,361,478	-				+1.3
1,361,478	-				+0.7
1,361,478	-				-1.4
1,361,478	-				-0.2
1,361,478	-				+1.2
1,361,478	-				+0.9
1,361,478	-				-0.1
1,361,478	-				+0.3
1,361,478	-				-0.9
1,361,479	+				+0.1
1,361,479	+				+0.8
1,361,487	-				-0.7
1,361,487	-				-2.0
1,361,487	-				-0.5
1,361,489	-				+0.4
1,361,540	+				-2.0
1,361,540	+				+1.2
1,361,548	-				-1.9
1,361,597	-				-0.3