Strain Fitness in Sphingobium sp. HT1-2 around GFF124

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
117,033	+				-0.8
117,033	+				-0.1
117,041	-				+0.2
117,041	-				+0.4
117,042	-				-0.7
117,051	+				+0.0
117,093	+				-1.0
117,093	+				-0.6
117,093	+				-1.7
117,095	-				+0.3
117,096	-				-1.8
117,096	-				-2.0
117,101	+				-0.5
117,101	+				+1.1
117,101	-				-1.5
117,101	-				-0.2
117,101	-				+0.5
117,101	-				+1.0
117,112	+				-0.3
117,112	+				+0.2
117,112	+				+0.0
117,112	+				+0.3
117,112	+				-0.8
117,120	-				+0.4
117,120	-				-0.1
117,137	-				+0.7
117,143	+				+1.3
117,144	-				+0.7
117,144	-				+0.3
117,148	+				+0.0
117,154	+				-0.1
117,162	-				-1.2
117,162	-				-1.3
117,170	+				+1.1
117,170	+				+0.0
117,184	-				-1.5
117,251	+		GFF123	0.13	-0.5
117,251	+		GFF123	0.13	+1.4
117,259	-		GFF123	0.15	+0.3
117,259	-		GFF123	0.15	-1.0
117,281	-		GFF123	0.17	+1.0
117,288	+		GFF123	0.18	-0.3
117,306	-		GFF123	0.20	-0.9
117,325	-		GFF123	0.23	-1.5
117,342	+		GFF123	0.25	+0.5
117,355	+		GFF123	0.27	-1.0
117,360	+		GFF123	0.27	-2.1
117,360	-		GFF123	0.27	-0.6
117,388	+		GFF123	0.31	-1.1
117,391	-		GFF123	0.31	-1.2
117,393	+		GFF123	0.32	+0.2
117,396	-		GFF123	0.32	-0.4
117,396	-		GFF123	0.32	-0.1
117,411	+		GFF123	0.34	-0.1
117,411	+		GFF123	0.34	+0.3
117,411	+		GFF123	0.34	+0.7
117,411	+		GFF123	0.34	+0.6
117,411	+		GFF123	0.34	-0.9
117,411	+		GFF123	0.34	-0.1
117,419	-		GFF123	0.35	-0.0
117,419	-		GFF123	0.35	-1.0
117,419	-		GFF123	0.35	-1.2
117,419	-		GFF123	0.35	-0.4
117,419	-		GFF123	0.35	+0.9
117,429	-		GFF123	0.36	-0.2
117,429	-		GFF123	0.36	-0.2
117,469	+		GFF123	0.41	+1.0
117,505	-		GFF123	0.46	-2.0
117,532	+		GFF123	0.49	-0.6
117,576	-		GFF123	0.55	+0.9
117,585	-		GFF123	0.56	-1.6
117,598	-		GFF123	0.58	+1.0
117,598	-		GFF123	0.58	+0.3
117,615	+		GFF123	0.60	-1.5
117,615	+		GFF123	0.60	-0.9
117,615	+		GFF123	0.60	-1.3
117,615	+		GFF123	0.60	+0.9
117,623	-		GFF123	0.61	+0.0
117,623	-		GFF123	0.61	+0.3
117,623	-		GFF123	0.61	+0.7
117,623	-		GFF123	0.61	-1.7
117,623	-		GFF123	0.61	+0.7
117,623	-		GFF123	0.61	+0.3
117,623	-		GFF123	0.61	-1.3
117,623	-		GFF123	0.61	+0.1
117,623	-		GFF123	0.61	-0.4
117,632	+		GFF123	0.62	-0.3
117,640	-		GFF123	0.63	-1.4
117,652	-		GFF123	0.65	-0.2
117,664	-		GFF123	0.66	+0.9
117,682	-		GFF123	0.68	+0.6
117,684	+		GFF123	0.69	+1.3
117,689	-		GFF123	0.69	+0.4
117,745	+		GFF123	0.76	-0.8
117,745	+		GFF123	0.76	-1.0
117,745	+		GFF123	0.76	+0.2
117,745	+		GFF123	0.76	-2.2
117,750	+		GFF123	0.77	-0.7
117,750	+		GFF123	0.77	-0.8
117,750	+		GFF123	0.77	+0.0
117,750	+		GFF123	0.77	-1.1
117,753	-		GFF123	0.77	+0.5
117,753	-		GFF123	0.77	-0.6
117,753	-		GFF123	0.77	-0.6
117,753	-		GFF123	0.77	-1.6
117,753	-		GFF123	0.77	+0.5
117,758	-		GFF123	0.78	-2.0
117,758	-		GFF123	0.78	-1.3
117,758	-		GFF123	0.78	-0.3
117,758	-		GFF123	0.78	-0.6
117,763	-		GFF123	0.79	+1.3
117,764	+		GFF123	0.79	-1.4
117,764	+		GFF123	0.79	+0.3
117,772	-		GFF123	0.80	+0.2
117,772	-		GFF123	0.80	+0.0
117,772	-		GFF123	0.80	-1.5
117,809	-		GFF123	0.84	-2.2
117,810	+		GFF123	0.85	+0.0
117,810	+		GFF123	0.85	+0.3
117,810	+		GFF123	0.85	+0.2
117,821	+		GFF123	0.86	+1.0
117,821	+		GFF123	0.86	-0.3
117,823	+		GFF123	0.86	-1.6
117,831	+		GFF123	0.87	-0.7
117,838	+		GFF123	0.88	-0.6
117,839	-		GFF123	0.88	-0.6
117,848	+		GFF123	0.89	-0.4
117,905	+				-0.7
117,908	-				-0.0
117,908	-				-1.2
117,908	-				+2.2
117,979	-				-1.4
118,052	+				+0.3
118,052	+				-0.0
118,053	+				-0.5
118,060	-				+0.9
118,061	-				-1.5
118,061	-				+0.5
118,061	-				+1.0
118,061	-				+1.3
118,061	-				+1.1
118,069	-				-0.6
118,077	+				-1.2
118,077	+				-1.7
118,077	+				+0.3
118,085	-				-1.0
118,085	-				-0.2
118,085	-				+0.1
118,085	-				+0.3
118,100	+				-0.6
118,100	+				-0.3
118,100	+				+0.2
118,100	+				-1.4
118,108	-				-0.3
118,108	-				-0.6
118,108	-				-0.0
118,108	-				+0.7
118,115	-				-2.2
118,133	+		GFF124	0.11	-2.1
118,155	+		GFF124	0.14	-1.4
118,156	+		GFF124	0.14	-0.9
118,156	+		GFF124	0.14	-0.6
118,162	+		GFF124	0.14	-0.7
118,162	+		GFF124	0.14	+0.6
118,162	+		GFF124	0.14	-1.6
118,164	-		GFF124	0.15	-0.7
118,164	-		GFF124	0.15	-0.1
118,168	+		GFF124	0.15	-0.6
118,168	+		GFF124	0.15	+0.4
118,174	-		GFF124	0.16	+0.0
118,174	-		GFF124	0.16	-1.6
118,186	-		GFF124	0.17	+0.2
118,192	+		GFF124	0.18	-0.2
118,218	-		GFF124	0.21	+0.1
118,220	-		GFF124	0.21	-2.4
118,275	-		GFF124	0.27	-0.3
118,289	+		GFF124	0.29	-1.0
118,313	+		GFF124	0.31	+0.4
118,319	+		GFF124	0.32	+1.0
118,319	+		GFF124	0.32	-0.7
118,319	+		GFF124	0.32	-2.1
118,321	-		GFF124	0.32	-0.2
118,322	-		GFF124	0.32	+0.4
118,325	+		GFF124	0.33	+0.0
118,327	-		GFF124	0.33	-0.6
118,327	-		GFF124	0.33	+1.3
118,327	-		GFF124	0.33	-0.4
118,334	+		GFF124	0.34	-0.6
118,351	+		GFF124	0.36	-1.0
118,359	-		GFF124	0.36	-0.5
118,390	-		GFF124	0.40	+1.5
118,399	+		GFF124	0.41	+0.3
118,399	+		GFF124	0.41	-1.3
118,399	+		GFF124	0.41	+0.5
118,404	+		GFF124	0.41	-2.5
118,405	+		GFF124	0.42	+0.2
118,405	+		GFF124	0.42	-0.6
118,405	+		GFF124	0.42	-0.3
118,405	+		GFF124	0.42	+1.2
118,405	+		GFF124	0.42	+0.4
118,405	+		GFF124	0.42	-0.1
118,405	+		GFF124	0.42	-0.0
118,405	+		GFF124	0.42	+0.6
118,405	+		GFF124	0.42	+0.3
118,405	+		GFF124	0.42	-0.4
118,405	+		GFF124	0.42	+1.3
118,407	-		GFF124	0.42	-1.2
118,412	-		GFF124	0.42	-0.4
118,413	-		GFF124	0.42	-1.1
118,413	-		GFF124	0.42	+0.2
118,413	-		GFF124	0.42	-0.5
118,413	-		GFF124	0.42	-0.4
118,448	+		GFF124	0.46	-0.5
118,448	+		GFF124	0.46	+0.6
118,453	+		GFF124	0.47	-2.4
118,473	+		GFF124	0.49	-1.0
118,478	+		GFF124	0.50	-0.8
118,479	+		GFF124	0.50	+0.6
118,483	+		GFF124	0.50	-0.5
118,483	+		GFF124	0.50	+0.1
118,483	+		GFF124	0.50	-2.3
118,541	+		GFF124	0.57	+1.0
118,544	-		GFF124	0.57	-2.5
118,546	+		GFF124	0.57	-1.4
118,546	+		GFF124	0.57	-0.8
118,556	+		GFF124	0.58	+0.0
118,556	+		GFF124	0.58	-0.3
118,590	+		GFF124	0.62	+0.6
118,598	-		GFF124	0.63	+0.7
118,598	-		GFF124	0.63	-0.4
118,626	+		GFF124	0.66	+1.3
118,626	+		GFF124	0.66	-0.2
118,626	+		GFF124	0.66	+1.1
118,634	-		GFF124	0.67	-0.6
118,669	+		GFF124	0.71	-1.3
118,674	+		GFF124	0.72	+0.8
118,674	+		GFF124	0.72	+0.5
118,674	+		GFF124	0.72	-0.7
118,674	+		GFF124	0.72	-0.6
118,674	+		GFF124	0.72	+0.6
118,674	+		GFF124	0.72	-2.2
118,674	+		GFF124	0.72	-2.3
118,674	+		GFF124	0.72	-0.5
118,674	+		GFF124	0.72	+0.2
118,674	+		GFF124	0.72	+0.2
118,674	+		GFF124	0.72	-0.3
118,674	+		GFF124	0.72	-0.5
118,674	+		GFF124	0.72	-1.9
118,674	+		GFF124	0.72	-0.8
118,682	-		GFF124	0.72	+1.3
118,682	-		GFF124	0.72	+0.1
118,682	-		GFF124	0.72	-0.8
118,682	-		GFF124	0.72	-0.0
118,682	-		GFF124	0.72	+0.2
118,682	-		GFF124	0.72	-2.1
118,682	-		GFF124	0.72	-0.6
118,682	-		GFF124	0.72	-1.4
118,682	-		GFF124	0.72	+0.2
118,682	-		GFF124	0.72	+0.2
118,682	-		GFF124	0.72	-0.4
118,682	-		GFF124	0.72	-0.6
118,687	-		GFF124	0.73	-2.1
118,687	-		GFF124	0.73	-0.5
118,710	+		GFF124	0.76	+0.3
118,715	-		GFF124	0.76	+0.3
118,743	+		GFF124	0.79	-0.0
118,775	+		GFF124	0.83	+0.6
118,783	-		GFF124	0.84	-0.2
118,783	-		GFF124	0.84	+0.4
118,783	-		GFF124	0.84	+0.7
118,783	-		GFF124	0.84	+1.0
118,783	-		GFF124	0.84	+0.4
118,887	+				-2.4
118,906	+				-1.2
118,917	+				-1.9
118,917	+				+0.3
118,924	+				+0.4
118,931	-				-0.2
118,945	+				+1.1
118,961	-				+0.4
118,963	+				-2.4
118,971	+				-0.7
118,971	+				+1.0
118,971	+				+1.5
118,971	-				-0.3
119,006	+				+0.2
119,009	-				-0.9
119,029	+				-0.5
119,029	+				+0.3
119,034	+				+0.4
119,037	-				-0.4
119,042	-				+0.7
119,059	+				-0.3
119,059	+				-0.3
119,059	+				+1.4
119,059	+				+0.1
119,059	+				-0.1
119,059	+				+0.0
119,066	-				-2.1
119,067	-				+0.1
119,067	-				+0.1
119,067	-				-0.3
119,067	-				-1.0
119,078	+				+0.5
119,101	-				-0.8
119,104	-				+1.2
119,112	-				-1.5
119,119	+				-1.7
119,128	+				+1.0
119,131	-				-2.5
119,154	-				+0.2
119,156	+				-0.2
119,156	+				+0.3
119,156	+				-0.7
119,156	+				-2.6
119,156	+				-1.8
119,156	+				+0.8
119,164	-				-0.8
119,164	-				-0.7
119,164	-				-0.3
119,164	-				-0.2
119,164	-				-1.8
119,171	+				+0.0
119,171	+				-0.9
119,179	+				+0.7
119,179	-				+1.0
119,187	-				+0.7
119,187	-				+1.0
119,193	+				+0.3
119,199	+				-1.6
119,199	+				+0.3
119,201	-				-1.8
119,207	-				+0.6
119,207	-				+0.1
119,207	-				-1.0
119,225	+		GFF125	0.11	-0.8
119,233	-		GFF125	0.11	+0.0
119,233	-		GFF125	0.11	-0.2
119,238	-		GFF125	0.11	-0.8
119,240	+		GFF125	0.11	-0.3
119,240	+		GFF125	0.11	+0.2
119,260	+		GFF125	0.12	-1.4
119,260	+		GFF125	0.12	-2.5
119,263	-		GFF125	0.12	+0.2
119,268	-		GFF125	0.12	-1.8
119,272	+		GFF125	0.12	-0.0
119,273	-		GFF125	0.13	-0.0
119,273	-		GFF125	0.13	+0.0
119,278	-		GFF125	0.13	+0.2
119,280	-		GFF125	0.13	-1.0
119,280	-		GFF125	0.13	-1.5
119,280	-		GFF125	0.13	-1.3
119,280	-		GFF125	0.13	+0.2
119,280	-		GFF125	0.13	-0.7
119,280	-		GFF125	0.13	+0.4
119,280	-		GFF125	0.13	-0.2
119,280	-		GFF125	0.13	-0.1
119,308	-		GFF125	0.14	-0.2
119,322	-		GFF125	0.15	-1.4
119,331	+		GFF125	0.15	-0.2
119,331	+		GFF125	0.15	+0.2
119,331	+		GFF125	0.15	+0.4
119,331	+		GFF125	0.15	+0.5
119,331	+		GFF125	0.15	-0.5
119,331	+		GFF125	0.15	-1.6
119,331	+		GFF125	0.15	-1.2
119,339	-		GFF125	0.15	-0.1
119,339	-		GFF125	0.15	-1.0
119,339	-		GFF125	0.15	-2.0
119,339	-		GFF125	0.15	-0.1
119,339	-		GFF125	0.15	-1.3
119,384	-		GFF125	0.17	+0.5
119,408	+		GFF125	0.18	+1.5
119,487	-		GFF125	0.21	-1.4
119,499	-		GFF125	0.22	-0.6
119,505	+		GFF125	0.22	-0.5
119,513	+		GFF125	0.22	-1.7
119,513	-		GFF125	0.22	+0.3
119,517	+		GFF125	0.22	-1.1
119,524	+		GFF125	0.23	-0.9
119,524	+		GFF125	0.23	-0.9
119,557	-		GFF125	0.24	-0.3
119,564	+		GFF125	0.24	-0.1
119,564	+		GFF125	0.24	-0.9
119,564	+		GFF125	0.24	-0.4
119,564	+		GFF125	0.24	-1.0
119,564	+		GFF125	0.24	+0.8
119,564	+		GFF125	0.24	-1.8
119,564	+		GFF125	0.24	-1.2
119,564	+		GFF125	0.24	+0.7
119,564	+		GFF125	0.24	-2.6
119,570	+		GFF125	0.25	-0.2
119,572	-		GFF125	0.25	-2.5
119,572	-		GFF125	0.25	-1.4
119,579	+		GFF125	0.25	-0.8
119,579	+		GFF125	0.25	+1.6
119,579	+		GFF125	0.25	+0.2
119,586	+		GFF125	0.25	-1.3
119,587	-		GFF125	0.25	+0.2
119,587	-		GFF125	0.25	-0.0
119,595	-		GFF125	0.26	-0.6
119,604	+		GFF125	0.26	+0.8
119,609	+		GFF125	0.26	+0.0
119,609	+		GFF125	0.26	-0.8
119,609	+		GFF125	0.26	-1.3
119,610	+		GFF125	0.26	-0.6
119,610	+		GFF125	0.26	+0.6
119,616	-		GFF125	0.26	-0.5
119,617	-		GFF125	0.27	-1.0
119,621	+		GFF125	0.27	-1.1
119,653	+		GFF125	0.28	-0.3
119,655	+		GFF125	0.28	-0.7
119,656	-		GFF125	0.28	-0.1
119,661	-		GFF125	0.28	-0.5
119,672	-		GFF125	0.29	-1.9
119,685	+		GFF125	0.29	-1.2
119,711	+		GFF125	0.30	-0.8
119,713	+		GFF125	0.30	+0.2
119,720	-		GFF125	0.31	-0.3
119,720	-		GFF125	0.31	-0.2
119,730	-		GFF125	0.31	+0.4
119,798	+		GFF125	0.34	-1.5
119,798	+		GFF125	0.34	-0.7
119,806	-		GFF125	0.34	+0.2
119,806	-		GFF125	0.34	+0.2
119,806	-		GFF125	0.34	+0.0
119,806	-		GFF125	0.34	+1.3
119,822	-		GFF125	0.35	+0.4
119,830	+		GFF125	0.35	-0.8
119,838	-		GFF125	0.36	-0.1
119,876	+		GFF125	0.37	-0.0
119,878	-		GFF125	0.37	-1.2
119,884	-		GFF125	0.37	-1.2
119,894	-		GFF125	0.38	-0.3
119,900	-		GFF125	0.38	-1.4
119,905	+		GFF125	0.38	-2.2
119,909	+		GFF125	0.38	+0.5
119,909	+		GFF125	0.38	+0.9
119,915	-		GFF125	0.39	-0.4
119,917	-		GFF125	0.39	-1.4
119,917	-		GFF125	0.39	+0.6