Strain Fitness in Sphingobium sp. HT1-2 around GFF1157

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,161,587	+		GFF1155	0.73	-0.9
1,161,594	+		GFF1155	0.74	-1.1
1,161,602	+		GFF1155	0.76	+0.3
1,161,609	+		GFF1155	0.77	+1.3
1,161,609	+		GFF1155	0.77	+0.5
1,161,610	-		GFF1155	0.77	-0.8
1,161,610	-		GFF1155	0.77	-0.2
1,161,614	+		GFF1155	0.78	-1.1
1,161,616	-		GFF1155	0.78	+1.0
1,161,639	-		GFF1155	0.82	-0.6
1,161,639	-		GFF1155	0.82	+0.4
1,161,667	+		GFF1155	0.86	-1.3
1,161,675	-		GFF1155	0.87	-0.3
1,161,711	+				-0.1
1,161,711	+				-0.3
1,161,711	+				+0.0
1,161,711	+				-0.5
1,161,711	+				+0.4
1,161,711	+				+0.0
1,161,719	-				-1.4
1,161,719	-				+0.9
1,161,719	-				-0.8
1,161,719	-				+0.9
1,161,751	+				-0.5
1,161,763	-				+0.1
1,161,806	-				-0.6
1,161,808	+				-2.8
1,161,814	-				+0.7
1,161,833	-				+0.4
1,161,850	+				+1.1
1,161,851	+				+0.8
1,161,858	-		GFF1156	0.11	+0.4
1,161,858	-		GFF1156	0.11	-2.4
1,161,858	-		GFF1156	0.11	-0.1
1,161,858	-		GFF1156	0.11	-2.1
1,161,859	-		GFF1156	0.11	-0.7
1,161,879	-		GFF1156	0.13	-0.5
1,161,881	+		GFF1156	0.14	-1.1
1,161,881	+		GFF1156	0.14	+0.9
1,161,883	+		GFF1156	0.14	+0.7
1,161,888	-		GFF1156	0.14	-0.7
1,161,905	-		GFF1156	0.17	-2.0
1,161,918	-		GFF1156	0.18	+1.8
1,161,923	+		GFF1156	0.19	+0.7
1,161,923	+		GFF1156	0.19	+0.5
1,161,923	-		GFF1156	0.19	+0.4
1,161,931	-		GFF1156	0.20	-0.0
1,161,931	-		GFF1156	0.20	+0.9
1,161,933	+		GFF1156	0.20	-1.7
1,161,936	-		GFF1156	0.20	+1.3
1,161,941	-		GFF1156	0.21	+0.5
1,161,983	-		GFF1156	0.26	+1.2
1,161,985	+		GFF1156	0.26	+0.1
1,161,993	-		GFF1156	0.27	-0.2
1,161,993	-		GFF1156	0.27	-1.8
1,162,045	-		GFF1156	0.34	+1.0
1,162,062	+		GFF1156	0.36	-1.3
1,162,062	+		GFF1156	0.36	-0.5
1,162,076	-		GFF1156	0.38	-0.4
1,162,107	-		GFF1156	0.41	-1.4
1,162,150	+		GFF1156	0.47	-0.1
1,162,174	-		GFF1156	0.50	-0.6
1,162,174	-		GFF1156	0.50	-2.1
1,162,174	-		GFF1156	0.50	+0.0
1,162,178	+		GFF1156	0.50	-0.9
1,162,178	+		GFF1156	0.50	-1.8
1,162,186	-		GFF1156	0.51	-1.8
1,162,250	+		GFF1156	0.59	+0.1
1,162,258	-		GFF1156	0.60	-1.3
1,162,258	-		GFF1156	0.60	-1.5
1,162,281	-		GFF1156	0.63	-0.5
1,162,281	-		GFF1156	0.63	+0.3
1,162,296	+		GFF1156	0.64	-1.3
1,162,312	+		GFF1156	0.66	+1.1
1,162,329	+		GFF1156	0.69	-1.7
1,162,339	+		GFF1156	0.70	+0.0
1,162,363	+		GFF1156	0.73	-1.2
1,162,363	-		GFF1156	0.73	+1.1
1,162,367	+		GFF1156	0.73	+0.5
1,162,378	-		GFF1156	0.75	-1.4
1,162,399	-		GFF1156	0.77	+0.1
1,162,410	-		GFF1156	0.78	-1.3
1,162,415	-		GFF1156	0.79	-1.3
1,162,422	+		GFF1156	0.80	-0.6
1,162,431	+		GFF1156	0.81	-0.2
1,162,439	-		GFF1156	0.82	-0.3
1,162,470	+		GFF1156	0.86	-2.1
1,162,470	+		GFF1156	0.86	-0.1
1,162,470	+		GFF1156	0.86	-0.5
1,162,470	+		GFF1156	0.86	-1.0
1,162,470	+		GFF1156	0.86	-0.7
1,162,470	+		GFF1156	0.86	-0.3
1,162,478	-		GFF1156	0.87	-1.6
1,162,478	-		GFF1156	0.87	-0.4
1,162,478	-		GFF1156	0.87	+1.1
1,162,486	-		GFF1156	0.88	+0.7
1,162,491	-		GFF1156	0.88	-0.7
1,162,511	-				-0.2
1,162,536	+				-0.9
1,162,556	+				+0.0
1,162,556	+				+0.6
1,162,561	+				+0.5
1,162,561	+				+0.5
1,162,561	+				+0.8
1,162,561	+				+0.9
1,162,561	+				-1.6
1,162,561	+				-0.2
1,162,564	-				-1.5
1,162,566	+				-0.3
1,162,569	-				-0.3
1,162,569	-				-1.9
1,162,569	-				+0.8
1,162,571	-				-0.2
1,162,574	-				-0.4
1,162,614	+		GFF1157	0.10	-0.9
1,162,627	-		GFF1157	0.15	-0.5
1,162,631	-		GFF1157	0.16	+0.4
1,162,635	+		GFF1157	0.18	-0.1
1,162,661	-		GFF1157	0.27	-0.7
1,162,670	+		GFF1157	0.30	+0.5
1,162,670	+		GFF1157	0.30	+0.7
1,162,670	+		GFF1157	0.30	-1.8
1,162,670	+		GFF1157	0.30	-1.2
1,162,670	+		GFF1157	0.30	+0.1
1,162,670	+		GFF1157	0.30	-0.3
1,162,670	+		GFF1157	0.30	+0.4
1,162,670	+		GFF1157	0.30	+0.6
1,162,670	+		GFF1157	0.30	+0.8
1,162,670	+		GFF1157	0.30	-1.2
1,162,670	+		GFF1157	0.30	-0.9
1,162,670	+		GFF1157	0.30	-0.9
1,162,670	+		GFF1157	0.30	+0.8
1,162,675	+		GFF1157	0.32	-1.4
1,162,678	-		GFF1157	0.33	-1.7
1,162,678	-		GFF1157	0.33	-1.5
1,162,678	-		GFF1157	0.33	-2.1
1,162,678	-		GFF1157	0.33	-0.2
1,162,678	-		GFF1157	0.33	-0.1
1,162,678	-		GFF1157	0.33	-0.7
1,162,678	-		GFF1157	0.33	+0.0
1,162,678	-		GFF1157	0.33	-1.1
1,162,678	-		GFF1157	0.33	-1.8
1,162,678	-		GFF1157	0.33	-1.0
1,162,683	-		GFF1157	0.35	+0.5
1,162,683	-		GFF1157	0.35	+0.1
1,162,721	+		GFF1157	0.48	+0.6
1,162,723	+		GFF1157	0.49	-0.7
1,162,723	+		GFF1157	0.49	+0.8
1,162,725	+		GFF1157	0.50	+0.2
1,162,726	+		GFF1157	0.50	-0.4
1,162,729	-		GFF1157	0.51	+0.1
1,162,729	-		GFF1157	0.51	+1.1
1,162,731	+		GFF1157	0.52	+0.2
1,162,731	+		GFF1157	0.52	+0.3
1,162,731	-		GFF1157	0.52	-0.5
1,162,739	-		GFF1157	0.55	-0.8
1,162,744	-		GFF1157	0.56	-1.4
1,162,767	+		GFF1157	0.65	+0.9
1,162,767	+		GFF1157	0.65	-1.3
1,162,773	+		GFF1157	0.67	+0.5
1,162,775	-		GFF1157	0.67	+0.9
1,162,775	-		GFF1157	0.67	+0.5
1,162,777	+		GFF1157	0.68	-0.7
1,162,781	-		GFF1157	0.70	-1.2
1,162,781	-		GFF1157	0.70	-0.3
1,162,789	+		GFF1157	0.72	+0.3
1,162,793	+		GFF1157	0.74	-0.2
1,162,803	+		GFF1157	0.77	+0.1
1,162,803	+		GFF1157	0.77	-0.5
1,162,803	+		GFF1157	0.77	-1.7
1,162,811	-		GFF1157	0.80	+0.7
1,162,811	-		GFF1157	0.80	-0.6
1,162,811	-		GFF1157	0.80	-0.9
1,162,811	-		GFF1157	0.80	-0.2
1,162,811	-		GFF1157	0.80	+0.3
1,162,827	-		GFF1157	0.86	-0.2
1,162,831	+		GFF1157	0.87	-0.1
1,162,831	+		GFF1157	0.87	+1.0
1,162,839	-				-0.9
1,162,841	+				+0.0
1,162,841	+				-0.4
1,162,841	+				+0.5
1,162,851	+				+0.5
1,162,870	+				+0.3
1,162,870	+				+0.2
1,162,870	+				+0.2
1,162,870	+				+1.2
1,162,870	+				-0.4
1,162,870	+				-0.9
1,162,878	-				+0.1
1,162,878	-				-1.5
1,162,878	-				+0.5
1,162,878	-				-0.6
1,162,878	-				+0.6
1,162,897	+				-0.4
1,162,897	+				-0.5
1,162,905	-				-1.4
1,162,905	-				-1.1
1,162,907	+				+0.2
1,162,915	-				-0.8
1,162,915	-				-0.0
1,162,915	-				-0.4
1,162,915	-				-0.6
1,162,915	-				+1.7
1,162,917	+				-0.5
1,162,917	+				+0.1
1,162,917	+				+0.1
1,162,917	+				+0.1
1,162,917	+				-0.4
1,162,917	+				+0.7
1,162,917	+				-0.6
1,162,917	+				-0.6
1,162,917	+				-0.2
1,162,917	+				+0.9
1,162,917	+				-0.5
1,162,923	-				-0.3
1,162,923	-				+0.8
1,162,925	-				-1.1
1,162,925	-				+0.2
1,162,925	-				-0.5
1,162,925	-				-1.0
1,162,925	-				-1.6
1,162,925	-				+0.7
1,162,925	-				+0.1
1,162,925	-				-0.5
1,162,925	-				+0.3
1,162,925	-				-1.0
1,162,925	-				-0.3
1,162,935	-				-2.3
1,162,984	+				+0.8
1,162,992	-				-1.6
1,163,013	-				-0.3
1,163,021	-				+0.2
1,163,062	-				-0.6
1,163,067	+				-0.1
1,163,073	+				-0.4
1,163,077	+				+0.5
1,163,081	-				-0.8
1,163,081	-				+0.3
1,163,084	+				+0.7
1,163,084	+				-1.3
1,163,092	-				-0.8
1,163,112	+				-0.7
1,163,117	+				-1.3
1,163,120	-				+0.9
1,163,125	-				+0.4
1,163,140	+				-2.1
1,163,149	+				-1.7
1,163,157	-				-0.3
1,163,175	+				-0.2
1,163,185	+				-0.5
1,163,185	+				-1.3
1,163,185	+				-0.6
1,163,185	+				-2.3
1,163,185	+				-0.9
1,163,185	+				-0.7
1,163,185	+				-1.1
1,163,185	+				-0.4
1,163,185	+				+0.0
1,163,193	-				+1.3
1,163,193	-				+0.5
1,163,193	-				+0.2
1,163,193	-				+0.7
1,163,193	-				-1.2
1,163,193	-				+0.2
1,163,198	-				-1.5
1,163,200	+				-0.3
1,163,200	+				+0.4
1,163,208	-				+0.5
1,163,208	-				-1.6
1,163,210	+				-1.6
1,163,213	-				+1.1
1,163,218	-				+0.4
1,163,253	+				-0.2
1,163,258	+				-1.1
1,163,258	+				+0.3
1,163,258	+				-0.6
1,163,258	+				-1.7
1,163,266	-				-0.3
1,163,266	-				+0.2
1,163,266	-				+0.3
1,163,266	-				+0.7
1,163,271	-				+0.7
1,163,295	-				-1.3
1,163,303	+				-1.5
1,163,333	+				+0.8
1,163,341	-				+0.1
1,163,363	-				-2.7
1,163,363	-				-1.1
1,163,364	-				+0.7
1,163,383	-				-0.3
1,163,398	-				+0.1
1,163,403	-				+0.2
1,163,509	+				-0.1
1,163,509	+				+0.1
1,163,509	+				-0.0
1,163,517	+				-0.3
1,163,536	+				-0.5
1,163,536	+				+1.4
1,163,536	+				-2.2
1,163,554	-				+0.1
1,163,576	-				+0.4
1,163,576	-				-2.0
1,163,581	-				+0.1
1,163,586	-				-0.9
1,163,598	-				+0.5
1,163,603	+				+0.2
1,163,603	-				+0.8
1,163,619	+				-0.7
1,163,619	+				+1.0
1,163,647	+				-0.0
1,163,649	-				-0.5
1,163,655	-				-1.2
1,163,662	+				+0.2
1,163,671	-				-0.7
1,163,671	-				-0.8
1,163,673	+				-1.4
1,163,680	+				+0.4
1,163,681	-				-0.4
1,163,681	-				+0.5
1,163,688	-				+0.1
1,163,688	-				-0.5
1,163,688	-				-1.1
1,163,688	-				-0.2
1,163,688	-				+1.2
1,163,693	-				+0.0
1,163,697	+				+0.7
1,163,707	+				+0.2
1,163,707	+				-0.3
1,163,707	+				-0.3
1,163,707	+				-0.2
1,163,707	+				-0.2
1,163,707	+				-1.5
1,163,707	+				-1.3
1,163,707	+				+0.2
1,163,710	-				+1.2
1,163,715	-				+0.7
1,163,715	-				-0.3
1,163,715	-				-0.0
1,163,715	-				+0.4
1,163,715	-				-0.2
1,163,715	-				-0.9
1,163,715	-				-0.0
1,163,715	-				-2.3
1,163,715	-				+0.2
1,163,715	-				-0.5
1,163,715	-				-1.3
1,163,715	-				+0.1
1,163,715	-				-0.6
1,163,715	-				-0.1
1,163,715	-				+0.2
1,163,715	-				-2.9
1,163,727	+				+0.0
1,163,727	+				-0.1
1,163,729	+				+0.4
1,163,732	+				-0.8
1,163,732	+				+0.1
1,163,734	+				-0.3
1,163,734	+				+0.5
1,163,737	+				-1.2
1,163,740	-				-0.1
1,163,742	-				+0.6
1,163,756	+				-1.3
1,163,759	-				-0.4
1,163,796	+				+0.1
1,163,796	+				+0.0
1,163,802	-				-0.7
1,163,802	-				-0.1
1,163,802	-				-0.2
1,163,802	-				+0.5
1,163,804	-				-1.5
1,163,804	-				-2.0
1,163,804	-				+1.0
1,163,804	-				-1.3
1,163,815	+				-2.3
1,163,815	+				-1.4
1,163,817	-				-0.3
1,163,820	+				+1.0
1,163,820	+				+0.3
1,163,823	-				-1.1
1,163,823	-				+0.2
1,163,823	-				+1.3
1,163,823	-				-2.8
1,163,825	+				-0.3
1,163,825	+				-0.3
1,163,825	+				+0.1
1,163,825	+				-1.2
1,163,825	+				-0.7
1,163,825	+				+1.4
1,163,830	+				-0.4
1,163,830	+				-0.9
1,163,833	-				+0.5
1,163,833	-				+0.4
1,163,833	-				+0.4
1,163,833	-				-0.8
1,163,833	-				-0.8
1,163,833	-				-2.3
1,163,833	-				+0.2
1,163,838	-				-0.6
1,163,838	-				-2.3
1,163,838	-				-1.4
1,163,838	-				-0.5
1,163,838	-				+0.6
1,163,843	+				+0.4
1,163,845	-		GFF1158	0.10	+0.2
1,163,851	-		GFF1158	0.11	-0.6
1,163,851	-		GFF1158	0.11	+1.3
1,163,856	-		GFF1158	0.11	-1.9
1,163,859	-		GFF1158	0.12	+0.8
1,163,863	-		GFF1158	0.12	+0.6