Strain Fitness in Sphingobium sp. HT1-2 around GFF1143

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,146,535	+		GFF1142	0.27	+0.5
1,146,536	+		GFF1142	0.27	-1.6
1,146,541	+		GFF1142	0.27	+0.2
1,146,551	-		GFF1142	0.28	-1.2
1,146,551	-		GFF1142	0.28	-1.4
1,146,578	+		GFF1142	0.30	-0.9
1,146,582	+		GFF1142	0.30	-0.4
1,146,629	+		GFF1142	0.34	+0.8
1,146,631	+		GFF1142	0.34	-1.5
1,146,633	+		GFF1142	0.34	-1.4
1,146,633	+		GFF1142	0.34	-1.2
1,146,633	+		GFF1142	0.34	+0.5
1,146,643	+		GFF1142	0.35	-0.1
1,146,651	-		GFF1142	0.35	-0.8
1,146,662	+		GFF1142	0.36	-0.1
1,146,667	-		GFF1142	0.37	-2.0
1,146,670	-		GFF1142	0.37	-0.4
1,146,670	-		GFF1142	0.37	-1.1
1,146,670	-		GFF1142	0.37	+0.8
1,146,672	+		GFF1142	0.37	-1.4
1,146,680	-		GFF1142	0.38	-0.4
1,146,713	+		GFF1142	0.40	-0.4
1,146,717	+		GFF1142	0.40	-1.8
1,146,717	+		GFF1142	0.40	-0.1
1,146,718	+		GFF1142	0.40	+0.2
1,146,721	-		GFF1142	0.41	-1.1
1,146,727	+		GFF1142	0.41	-0.6
1,146,729	-		GFF1142	0.41	+0.8
1,146,732	+		GFF1142	0.42	-1.6
1,146,735	-		GFF1142	0.42	-1.5
1,146,740	-		GFF1142	0.42	-0.2
1,146,740	-		GFF1142	0.42	-0.1
1,146,740	-		GFF1142	0.42	-3.2
1,146,744	+		GFF1142	0.42	+0.5
1,146,744	+		GFF1142	0.42	-2.2
1,146,752	-		GFF1142	0.43	-2.0
1,146,766	+		GFF1142	0.44	-0.4
1,146,766	+		GFF1142	0.44	-1.6
1,146,766	+		GFF1142	0.44	-2.0
1,146,766	+		GFF1142	0.44	-0.6
1,146,774	-		GFF1142	0.45	-1.1
1,146,774	-		GFF1142	0.45	+0.3
1,146,774	-		GFF1142	0.45	-1.5
1,146,779	+		GFF1142	0.45	-0.6
1,146,779	+		GFF1142	0.45	-1.0
1,146,798	+		GFF1142	0.46	-0.2
1,146,806	-		GFF1142	0.47	+0.4
1,146,806	-		GFF1142	0.47	+0.1
1,146,806	-		GFF1142	0.47	-0.8
1,146,832	+		GFF1142	0.49	+0.2
1,146,838	-		GFF1142	0.49	-0.1
1,146,848	+		GFF1142	0.50	+0.2
1,146,849	+		GFF1142	0.50	+1.4
1,146,858	+		GFF1142	0.51	+0.6
1,146,863	+		GFF1142	0.51	+0.5
1,146,868	+		GFF1142	0.52	-1.6
1,146,868	+		GFF1142	0.52	-1.1
1,146,868	+		GFF1142	0.52	-0.7
1,146,868	+		GFF1142	0.52	-0.6
1,146,868	+		GFF1142	0.52	-0.8
1,146,868	+		GFF1142	0.52	+0.1
1,146,868	+		GFF1142	0.52	-0.9
1,146,871	-		GFF1142	0.52	+1.0
1,146,876	-		GFF1142	0.52	-0.0
1,146,876	-		GFF1142	0.52	-0.3
1,146,876	-		GFF1142	0.52	-0.1
1,146,896	+		GFF1142	0.54	+0.8
1,146,915	+		GFF1142	0.55	-0.8
1,146,915	+		GFF1142	0.55	-0.1
1,146,957	+		GFF1142	0.58	-0.8
1,146,965	-		GFF1142	0.59	-0.2
1,147,000	-		GFF1142	0.62	+0.2
1,147,023	-		GFF1142	0.63	-0.8
1,147,074	+		GFF1142	0.67	+0.6
1,147,099	+		GFF1142	0.69	-0.1
1,147,107	-		GFF1142	0.70	-0.4
1,147,128	+		GFF1142	0.71	-0.1
1,147,161	+		GFF1142	0.74	-0.8
1,147,175	-		GFF1142	0.75	-0.7
1,147,181	+		GFF1142	0.75	-0.6
1,147,186	+		GFF1142	0.76	-0.4
1,147,218	+		GFF1142	0.78	-0.3
1,147,218	+		GFF1142	0.78	+0.7
1,147,218	+		GFF1142	0.78	+0.0
1,147,218	+		GFF1142	0.78	+0.1
1,147,226	-		GFF1142	0.79	-0.2
1,147,226	-		GFF1142	0.79	-0.8
1,147,229	+		GFF1142	0.79	-3.5
1,147,237	+		GFF1142	0.79	-1.4
1,147,237	+		GFF1142	0.79	-0.1
1,147,237	+		GFF1142	0.79	+0.1
1,147,237	-		GFF1142	0.79	+0.6
1,147,237	-		GFF1142	0.79	+0.2
1,147,239	+		GFF1142	0.80	-1.5
1,147,239	+		GFF1142	0.80	-0.2
1,147,239	+		GFF1142	0.80	-2.0
1,147,253	+		GFF1142	0.81	+0.5
1,147,261	-		GFF1142	0.81	-0.4
1,147,261	-		GFF1142	0.81	+0.6
1,147,262	-		GFF1142	0.81	+0.1
1,147,289	-		GFF1142	0.83	+0.2
1,147,291	+		GFF1142	0.83	-1.1
1,147,299	-		GFF1142	0.84	+0.7
1,147,299	-		GFF1142	0.84	-1.7
1,147,299	-		GFF1142	0.84	-0.4
1,147,299	-		GFF1142	0.84	-0.2
1,147,299	-		GFF1142	0.84	-1.0
1,147,305	+		GFF1142	0.85	+0.7
1,147,305	+		GFF1142	0.85	-0.0
1,147,305	+		GFF1142	0.85	-1.2
1,147,310	-		GFF1142	0.85	-0.6
1,147,320	+		GFF1142	0.86	+1.4
1,147,325	+		GFF1142	0.86	-0.6
1,147,333	-		GFF1142	0.87	-0.1
1,147,334	+		GFF1142	0.87	-1.8
1,147,341	+		GFF1142	0.87	+0.2
1,147,341	+		GFF1142	0.87	-0.4
1,147,341	+		GFF1142	0.87	-1.0
1,147,341	+		GFF1142	0.87	-1.9
1,147,341	+		GFF1142	0.87	-0.9
1,147,349	-		GFF1142	0.88	-2.4
1,147,349	-		GFF1142	0.88	+0.0
1,147,349	-		GFF1142	0.88	-0.4
1,147,349	-		GFF1142	0.88	+0.2
1,147,354	+		GFF1142	0.88	-1.8
1,147,355	+		GFF1142	0.88	+0.5
1,147,355	+		GFF1142	0.88	+0.4
1,147,355	+		GFF1142	0.88	-2.0
1,147,362	+		GFF1142	0.89	-1.3
1,147,363	-		GFF1142	0.89	+0.2
1,147,363	-		GFF1142	0.89	+0.5
1,147,363	-		GFF1142	0.89	-0.5
1,147,363	-		GFF1142	0.89	-0.9
1,147,380	+				-0.4
1,147,380	-				-1.0
1,147,419	-				+0.2
1,147,503	-				-1.0
1,147,510	+				-0.4
1,147,532	+				-0.3
1,147,554	-				+1.2
1,147,561	-				-0.0
1,147,578	+				+0.2
1,147,578	+				-0.0
1,147,578	+				+1.1
1,147,578	+				-1.4
1,147,578	+				-0.4
1,147,578	+				+1.5
1,147,578	+				-0.9
1,147,578	+				-1.5
1,147,586	-				+0.2
1,147,586	-				-0.5
1,147,594	-				-0.5
1,147,607	+		GFF1143	0.11	-1.1
1,147,609	+		GFF1143	0.11	-0.9
1,147,624	+		GFF1143	0.13	-0.0
1,147,644	+		GFF1143	0.15	+1.5
1,147,667	+		GFF1143	0.18	+0.6
1,147,667	+		GFF1143	0.18	-0.1
1,147,667	-		GFF1143	0.18	-2.1
1,147,679	+		GFF1143	0.19	+1.3
1,147,679	+		GFF1143	0.19	+0.2
1,147,687	-		GFF1143	0.20	-0.3
1,147,700	+		GFF1143	0.21	-0.1
1,147,729	+		GFF1143	0.25	-0.7
1,147,734	+		GFF1143	0.25	-0.4
1,147,742	-		GFF1143	0.26	+0.9
1,147,754	+		GFF1143	0.27	-0.2
1,147,754	+		GFF1143	0.27	-0.1
1,147,762	-		GFF1143	0.28	-1.3
1,147,848	+		GFF1143	0.38	+0.1
1,147,864	+		GFF1143	0.39	+0.2
1,147,867	-		GFF1143	0.40	+0.6
1,147,907	+		GFF1143	0.44	-1.3
1,147,907	+		GFF1143	0.44	-1.2
1,147,912	+		GFF1143	0.45	-0.6
1,147,915	-		GFF1143	0.45	-1.4
1,147,915	-		GFF1143	0.45	+0.1
1,147,915	-		GFF1143	0.45	-1.5
1,147,915	-		GFF1143	0.45	+0.3
1,147,920	+		GFF1143	0.46	-0.9
1,147,922	+		GFF1143	0.46	-2.4
1,147,939	+		GFF1143	0.48	-1.2
1,147,944	+		GFF1143	0.48	-2.4
1,147,947	-		GFF1143	0.49	-2.4
1,147,981	-		GFF1143	0.52	-1.0
1,147,981	-		GFF1143	0.52	+1.3
1,148,013	-		GFF1143	0.56	+1.5
1,148,030	+		GFF1143	0.58	-1.6
1,148,030	+		GFF1143	0.58	-0.7
1,148,038	-		GFF1143	0.59	-2.8
1,148,038	-		GFF1143	0.59	-2.7
1,148,040	+		GFF1143	0.59	+0.7
1,148,048	-		GFF1143	0.60	+0.4
1,148,067	-		GFF1143	0.62	-0.7
1,148,067	-		GFF1143	0.62	-1.4
1,148,067	-		GFF1143	0.62	-0.3
1,148,083	-		GFF1143	0.64	-2.6
1,148,083	-		GFF1143	0.64	+0.1
1,148,127	-		GFF1143	0.68	-2.2
1,148,127	-		GFF1143	0.68	+0.3
1,148,136	-		GFF1143	0.69	-0.6
1,148,150	+		GFF1143	0.71	-1.5
1,148,159	+		GFF1143	0.72	-0.5
1,148,175	-		GFF1143	0.74	+0.6
1,148,177	-		GFF1143	0.74	-0.1
1,148,221	+		GFF1143	0.79	-1.4
1,148,224	-		GFF1143	0.79	-0.6
1,148,235	-		GFF1143	0.80	-0.5
1,148,250	-		GFF1143	0.82	+0.2
1,148,270	-		GFF1143	0.84	+0.2
1,148,277	+		GFF1143	0.85	-0.9
1,148,278	+		GFF1143	0.85	+0.3
1,148,285	-		GFF1143	0.86	-2.7
1,148,288	+		GFF1143	0.86	-0.0
1,148,296	+		GFF1143	0.87	+0.1
1,148,304	-		GFF1143	0.88	-0.5
1,148,305	-		GFF1143	0.88	-1.1
1,148,323	+				-0.8
1,148,329	+				+0.5
1,148,329	+				+0.1
1,148,331	+				+0.4
1,148,361	+				+0.6
1,148,361	+				-0.4
1,148,363	-				-2.0
1,148,369	-				-0.5
1,148,369	-				-1.4
1,148,375	-				+0.1
1,148,380	+				-0.1
1,148,380	+				-2.1
1,148,388	-				+0.6
1,148,388	-				-0.6
1,148,388	-				+0.4
1,148,388	-				+1.1
1,148,388	-				-0.5
1,148,388	-				-0.7
1,148,388	-				-1.5
1,148,388	-				-0.0
1,148,388	-				+0.2
1,148,541	+				+1.2
1,148,546	+				-0.4
1,148,554	-				-0.1
1,148,554	-				-0.1
1,148,585	-				-0.6
1,148,597	+				-0.9
1,148,626	+				+0.3
1,148,626	+				-0.6
1,148,639	-				-1.0
1,148,663	+		GFF1144	0.11	-1.8
1,148,663	+		GFF1144	0.11	+1.2
1,148,663	+		GFF1144	0.11	+0.1
1,148,663	+		GFF1144	0.11	-0.4
1,148,663	+		GFF1144	0.11	-0.3
1,148,665	+		GFF1144	0.11	-0.5
1,148,670	+		GFF1144	0.12	-0.6
1,148,671	-		GFF1144	0.12	-0.5
1,148,671	-		GFF1144	0.12	-0.4
1,148,671	-		GFF1144	0.12	+1.2
1,148,678	+		GFF1144	0.12	-0.8
1,148,696	+		GFF1144	0.14	-1.5
1,148,706	+		GFF1144	0.15	-0.6
1,148,713	+		GFF1144	0.15	+1.0
1,148,715	+		GFF1144	0.15	-0.5
1,148,715	-		GFF1144	0.15	-0.2
1,148,724	-		GFF1144	0.16	-1.6
1,148,724	-		GFF1144	0.16	-0.7
1,148,731	+		GFF1144	0.16	-2.2
1,148,739	-		GFF1144	0.17	-1.0
1,148,739	-		GFF1144	0.17	-0.5
1,148,809	-		GFF1144	0.22	-0.6
1,148,811	+		GFF1144	0.22	-0.0
1,148,811	+		GFF1144	0.22	-2.1
1,148,811	+		GFF1144	0.22	+0.4
1,148,819	-		GFF1144	0.23	-1.4
1,148,819	-		GFF1144	0.23	+0.8
1,148,819	-		GFF1144	0.23	+0.8
1,148,819	-		GFF1144	0.23	-2.5
1,148,819	-		GFF1144	0.23	+0.2
1,148,819	-		GFF1144	0.23	+0.3
1,148,819	-		GFF1144	0.23	-0.1
1,148,819	-		GFF1144	0.23	+0.3
1,148,819	-		GFF1144	0.23	-0.2
1,148,821	+		GFF1144	0.23	-0.5
1,148,829	-		GFF1144	0.24	-0.0
1,148,859	-		GFF1144	0.26	-0.3
1,148,869	+		GFF1144	0.27	+0.1
1,148,877	-		GFF1144	0.27	-0.9
1,148,892	+		GFF1144	0.29	+0.2
1,148,892	+		GFF1144	0.29	+0.8
1,148,892	+		GFF1144	0.29	+0.5
1,148,896	-		GFF1144	0.29	-0.4
1,148,900	-		GFF1144	0.29	+0.7
1,148,900	-		GFF1144	0.29	-0.9
1,148,900	-		GFF1144	0.29	-0.3
1,148,900	-		GFF1144	0.29	-1.1
1,148,910	-		GFF1144	0.30	-1.4
1,148,934	-		GFF1144	0.32	+0.1
1,148,939	-		GFF1144	0.32	+0.2
1,148,946	-		GFF1144	0.33	+0.3
1,148,947	-		GFF1144	0.33	-0.5
1,148,957	-		GFF1144	0.33	+0.5
1,149,003	-		GFF1144	0.37	+0.0
1,149,005	+		GFF1144	0.37	-0.0
1,149,036	+		GFF1144	0.39	-0.4
1,149,056	+		GFF1144	0.41	-1.4
1,149,066	+		GFF1144	0.42	-0.9
1,149,071	+		GFF1144	0.42	-0.7
1,149,074	-		GFF1144	0.42	+0.1
1,149,080	+		GFF1144	0.43	-1.2
1,149,088	-		GFF1144	0.43	-0.4
1,149,107	+		GFF1144	0.45	+0.1
1,149,130	-		GFF1144	0.46	+1.2
1,149,135	-		GFF1144	0.47	-0.7
1,149,140	+		GFF1144	0.47	+0.1
1,149,148	-		GFF1144	0.48	+0.0
1,149,155	-		GFF1144	0.48	-1.2
1,149,164	+		GFF1144	0.49	-1.4
1,149,166	+		GFF1144	0.49	-0.4
1,149,172	-		GFF1144	0.50	+0.2
1,149,172	-		GFF1144	0.50	-1.1
1,149,174	+		GFF1144	0.50	-0.6
1,149,174	-		GFF1144	0.50	+0.2
1,149,193	+		GFF1144	0.51	+1.0
1,149,194	+		GFF1144	0.51	+0.2
1,149,194	+		GFF1144	0.51	-2.1
1,149,201	-		GFF1144	0.52	+0.4
1,149,202	-		GFF1144	0.52	-1.5
1,149,202	-		GFF1144	0.52	-0.4
1,149,234	+		GFF1144	0.54	-0.1
1,149,238	-		GFF1144	0.55	-0.8
1,149,250	-		GFF1144	0.55	-0.8
1,149,271	-		GFF1144	0.57	-2.2
1,149,281	-		GFF1144	0.58	-0.5
1,149,281	-		GFF1144	0.58	+0.6
1,149,292	-		GFF1144	0.59	-0.8
1,149,312	+		GFF1144	0.60	+1.3
1,149,334	-		GFF1144	0.62	-1.0
1,149,360	+		GFF1144	0.64	-0.8
1,149,381	+		GFF1144	0.65	-2.3
1,149,400	-		GFF1144	0.67	+1.2
1,149,400	-		GFF1144	0.67	+0.3
1,149,400	-		GFF1144	0.67	+0.5
1,149,400	-		GFF1144	0.67	+0.6
1,149,400	-		GFF1144	0.67	-1.4