Strain Fitness in Sphingobium sp. HT1-2 around GFF1130

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,133,479	-		GFF1129	0.13	-0.2
1,133,479	-		GFF1129	0.13	-1.1
1,133,479	-		GFF1129	0.13	+0.0
1,133,483	+		GFF1129	0.13	+0.3
1,133,483	+		GFF1129	0.13	-0.0
1,133,483	+		GFF1129	0.13	-0.3
1,133,483	+		GFF1129	0.13	+0.7
1,133,483	+		GFF1129	0.13	+0.9
1,133,484	-		GFF1129	0.13	-2.1
1,133,484	-		GFF1129	0.13	-1.6
1,133,491	-		GFF1129	0.14	-1.5
1,133,491	-		GFF1129	0.14	-1.5
1,133,491	-		GFF1129	0.14	+0.4
1,133,520	+		GFF1129	0.16	+0.3
1,133,542	-		GFF1129	0.18	-0.6
1,133,561	+		GFF1129	0.20	+0.4
1,133,561	+		GFF1129	0.20	+0.0
1,133,561	+		GFF1129	0.20	-1.4
1,133,571	+		GFF1129	0.21	+0.4
1,133,579	+		GFF1129	0.22	+0.3
1,133,579	-		GFF1129	0.22	-0.1
1,133,579	-		GFF1129	0.22	-0.6
1,133,579	-		GFF1129	0.22	-0.7
1,133,588	-		GFF1129	0.22	-0.0
1,133,588	-		GFF1129	0.22	+0.7
1,133,589	-		GFF1129	0.23	+1.0
1,133,590	+		GFF1129	0.23	+0.8
1,133,593	+		GFF1129	0.23	+0.3
1,133,595	+		GFF1129	0.23	+0.5
1,133,601	-		GFF1129	0.24	+0.4
1,133,601	-		GFF1129	0.24	-0.3
1,133,601	-		GFF1129	0.24	+0.6
1,133,603	+		GFF1129	0.24	+0.3
1,133,603	+		GFF1129	0.24	+0.2
1,133,603	+		GFF1129	0.24	-0.2
1,133,603	+		GFF1129	0.24	-0.2
1,133,603	+		GFF1129	0.24	+1.6
1,133,603	+		GFF1129	0.24	-0.4
1,133,603	+		GFF1129	0.24	-0.8
1,133,603	+		GFF1129	0.24	+0.7
1,133,603	+		GFF1129	0.24	-0.4
1,133,603	+		GFF1129	0.24	+0.2
1,133,603	+		GFF1129	0.24	-1.9
1,133,603	+		GFF1129	0.24	-0.0
1,133,603	+		GFF1129	0.24	-0.4
1,133,603	+		GFF1129	0.24	+0.3
1,133,603	+		GFF1129	0.24	-0.9
1,133,603	+		GFF1129	0.24	+0.4
1,133,603	+		GFF1129	0.24	-0.6
1,133,603	+		GFF1129	0.24	-0.3
1,133,603	+		GFF1129	0.24	-1.1
1,133,603	+		GFF1129	0.24	-0.5
1,133,605	+		GFF1129	0.24	-0.8
1,133,605	+		GFF1129	0.24	-0.4
1,133,605	+		GFF1129	0.24	-0.4
1,133,605	+		GFF1129	0.24	-0.4
1,133,605	+		GFF1129	0.24	-0.6
1,133,605	+		GFF1129	0.24	-1.1
1,133,607	+		GFF1129	0.24	-1.5
1,133,611	-		GFF1129	0.25	+0.0
1,133,611	-		GFF1129	0.25	+0.1
1,133,611	-		GFF1129	0.25	-2.3
1,133,611	-		GFF1129	0.25	-0.9
1,133,611	-		GFF1129	0.25	-1.9
1,133,611	-		GFF1129	0.25	-0.3
1,133,611	-		GFF1129	0.25	-0.2
1,133,611	-		GFF1129	0.25	+0.8
1,133,611	-		GFF1129	0.25	-2.1
1,133,611	-		GFF1129	0.25	-0.4
1,133,611	-		GFF1129	0.25	+0.5
1,133,613	-		GFF1129	0.25	-0.5
1,133,613	-		GFF1129	0.25	-2.1
1,133,613	-		GFF1129	0.25	-0.5
1,133,614	+		GFF1129	0.25	-1.0
1,133,614	+		GFF1129	0.25	+1.4
1,133,615	+		GFF1129	0.25	+1.1
1,133,622	-		GFF1129	0.26	+0.9
1,133,622	-		GFF1129	0.26	-0.0
1,133,622	-		GFF1129	0.26	-0.9
1,133,622	-		GFF1129	0.26	-0.8
1,133,623	-		GFF1129	0.26	+1.1
1,133,629	+		GFF1129	0.26	-0.6
1,133,637	-		GFF1129	0.27	-0.3
1,133,637	-		GFF1129	0.27	-2.7
1,133,641	+		GFF1129	0.27	-0.4
1,133,676	+		GFF1129	0.30	+0.5
1,133,676	+		GFF1129	0.30	+0.5
1,133,676	+		GFF1129	0.30	+0.0
1,133,676	+		GFF1129	0.30	+1.9
1,133,684	-		GFF1129	0.31	+0.5
1,133,691	+		GFF1129	0.32	-0.2
1,133,691	+		GFF1129	0.32	-0.5
1,133,708	+		GFF1129	0.33	+0.2
1,133,746	+		GFF1129	0.37	-0.2
1,133,760	+		GFF1129	0.38	-1.1
1,133,768	-		GFF1129	0.38	-0.2
1,133,768	-		GFF1129	0.38	-0.8
1,133,768	-		GFF1129	0.38	-0.8
1,133,770	+		GFF1129	0.39	-0.1
1,133,770	+		GFF1129	0.39	-1.6
1,133,778	-		GFF1129	0.39	-0.1
1,133,809	+		GFF1129	0.42	-1.3
1,133,822	-		GFF1129	0.43	-1.0
1,133,827	-		GFF1129	0.44	+1.0
1,133,830	+		GFF1129	0.44	+0.7
1,133,842	+		GFF1129	0.45	-0.8
1,133,844	+		GFF1129	0.45	+0.2
1,133,845	-		GFF1129	0.45	-2.8
1,133,849	+		GFF1129	0.46	+0.4
1,133,863	-		GFF1129	0.47	-0.5
1,133,870	+		GFF1129	0.48	-0.9
1,133,895	-		GFF1129	0.50	-0.2
1,133,895	-		GFF1129	0.50	+0.6
1,133,895	-		GFF1129	0.50	-1.6
1,133,904	+		GFF1129	0.51	+0.8
1,133,913	+		GFF1129	0.51	-0.5
1,133,920	+		GFF1129	0.52	-1.6
1,133,920	+		GFF1129	0.52	-0.5
1,133,928	-		GFF1129	0.53	-0.8
1,133,928	-		GFF1129	0.53	-1.3
1,133,938	-		GFF1129	0.54	+0.2
1,133,943	-		GFF1129	0.54	+0.5
1,133,955	+		GFF1129	0.55	+1.3
1,133,958	+		GFF1129	0.55	+0.2
1,133,965	+		GFF1129	0.56	-3.0
1,133,965	+		GFF1129	0.56	+0.7
1,133,968	-		GFF1129	0.56	+0.4
1,133,986	+		GFF1129	0.58	-0.8
1,133,990	+		GFF1129	0.58	-1.8
1,133,990	+		GFF1129	0.58	-2.0
1,133,990	+		GFF1129	0.58	+1.0
1,133,990	+		GFF1129	0.58	-0.1
1,133,998	-		GFF1129	0.59	-1.6
1,133,998	-		GFF1129	0.59	-1.1
1,134,006	+		GFF1129	0.60	-0.6
1,134,006	+		GFF1129	0.60	+0.3
1,134,014	-		GFF1129	0.60	-0.7
1,134,014	-		GFF1129	0.60	-1.2
1,134,026	+		GFF1129	0.61	+0.0
1,134,026	+		GFF1129	0.61	+1.4
1,134,026	+		GFF1129	0.61	-1.5
1,134,026	+		GFF1129	0.61	-0.3
1,134,026	+		GFF1129	0.61	-0.7
1,134,026	+		GFF1129	0.61	-0.9
1,134,026	+		GFF1129	0.61	-0.5
1,134,034	-		GFF1129	0.62	+0.6
1,134,034	-		GFF1129	0.62	-0.6
1,134,034	-		GFF1129	0.62	+0.7
1,134,034	-		GFF1129	0.62	-1.8
1,134,034	-		GFF1129	0.62	+0.5
1,134,034	-		GFF1129	0.62	-1.3
1,134,036	+		GFF1129	0.62	-0.7
1,134,044	-		GFF1129	0.63	-0.7
1,134,044	-		GFF1129	0.63	+0.5
1,134,044	-		GFF1129	0.63	-0.2
1,134,060	-		GFF1129	0.64	-0.1
1,134,067	-		GFF1129	0.65	+0.6
1,134,093	-		GFF1129	0.67	-2.5
1,134,095	+		GFF1129	0.68	-0.0
1,134,111	-		GFF1129	0.69	-0.3
1,134,128	+		GFF1129	0.70	-0.9
1,134,128	+		GFF1129	0.70	-0.6
1,134,128	+		GFF1129	0.70	+0.4
1,134,136	-		GFF1129	0.71	-0.7
1,134,168	+		GFF1129	0.74	-1.4
1,134,168	+		GFF1129	0.74	-0.7
1,134,173	+		GFF1129	0.74	-0.0
1,134,173	+		GFF1129	0.74	-2.1
1,134,181	-		GFF1129	0.75	-0.8
1,134,181	-		GFF1129	0.75	+0.7
1,134,181	-		GFF1129	0.75	-0.5
1,134,195	-		GFF1129	0.76	-0.1
1,134,200	+		GFF1129	0.77	+0.4
1,134,208	-		GFF1129	0.78	+0.3
1,134,208	-		GFF1129	0.78	+0.0
1,134,228	-		GFF1129	0.79	-1.3
1,134,269	-		GFF1129	0.83	+0.2
1,134,311	+		GFF1129	0.87	+0.2
1,134,316	+		GFF1129	0.87	-2.1
1,134,316	+		GFF1129	0.87	-1.0
1,134,319	-		GFF1129	0.87	-0.5
1,134,321	+		GFF1129	0.88	+0.2
1,134,335	+		GFF1129	0.89	-0.9
1,134,343	-		GFF1129	0.90	-1.3
1,134,365	-				-0.5
1,134,395	+				+0.2
1,134,400	+				+0.8
1,134,403	-				-0.7
1,134,403	-				+0.5
1,134,403	-				-0.7
1,134,410	-				-0.6
1,134,411	+				-0.1
1,134,412	+				+0.1
1,134,412	+				-0.3
1,134,419	-				+0.2
1,134,420	-				-0.6
1,134,420	-				-1.1
1,134,434	+				-0.3
1,134,438	+				+0.5
1,134,444	+				-1.7
1,134,453	-				+0.3
1,134,467	-				-1.7
1,134,488	+				-0.3
1,134,490	+				-0.7
1,134,490	+				+0.1
1,134,490	+				+0.2
1,134,490	+				-2.7
1,134,498	-				+0.8
1,134,500	+				+1.2
1,134,503	+				-0.8
1,134,513	+				+0.4
1,134,513	+				+0.8
1,134,526	-				-1.0
1,134,532	+				+0.5
1,134,538	+				-1.8
1,134,540	-				-0.3
1,134,551	+				+0.3
1,134,554	-				+1.5
1,134,559	-				-0.4
1,134,564	+				-0.7
1,134,564	-				+0.2
1,134,569	+				+0.2
1,134,573	+				+0.1
1,134,573	+				-1.6
1,134,574	+				-2.1
1,134,577	-				-0.4
1,134,577	-				-1.8
1,134,577	-				+1.0
1,134,577	-				-1.9
1,134,582	-		GFF1130	0.10	-0.0
1,134,584	+		GFF1130	0.10	-0.4
1,134,584	+		GFF1130	0.10	-0.4
1,134,584	+		GFF1130	0.10	-0.3
1,134,584	+		GFF1130	0.10	+0.9
1,134,584	+		GFF1130	0.10	+1.0
1,134,587	-		GFF1130	0.11	+0.1
1,134,589	+		GFF1130	0.11	-0.7
1,134,589	+		GFF1130	0.11	-1.7
1,134,592	-		GFF1130	0.11	+1.0
1,134,592	-		GFF1130	0.11	-1.1
1,134,592	-		GFF1130	0.11	+0.5
1,134,592	-		GFF1130	0.11	-1.9
1,134,592	-		GFF1130	0.11	+0.0
1,134,592	-		GFF1130	0.11	-1.0
1,134,592	-		GFF1130	0.11	+1.1
1,134,592	-		GFF1130	0.11	-0.9
1,134,592	-		GFF1130	0.11	-1.3
1,134,592	-		GFF1130	0.11	-0.8
1,134,594	+		GFF1130	0.11	+1.5
1,134,595	+		GFF1130	0.11	-0.4
1,134,595	+		GFF1130	0.11	-1.3
1,134,595	+		GFF1130	0.11	-1.3
1,134,597	-		GFF1130	0.11	-0.7
1,134,597	-		GFF1130	0.11	-0.1
1,134,603	-		GFF1130	0.12	-0.4
1,134,613	+		GFF1130	0.13	+1.2
1,134,641	+		GFF1130	0.15	+1.6
1,134,646	+		GFF1130	0.15	-1.5
1,134,646	+		GFF1130	0.15	-0.4
1,134,646	+		GFF1130	0.15	-0.5
1,134,646	+		GFF1130	0.15	-0.8
1,134,646	+		GFF1130	0.15	-0.2
1,134,646	+		GFF1130	0.15	-0.6
1,134,646	+		GFF1130	0.15	-0.6
1,134,646	+		GFF1130	0.15	-0.1
1,134,646	+		GFF1130	0.15	-1.6
1,134,654	-		GFF1130	0.16	+0.3
1,134,654	-		GFF1130	0.16	-2.3
1,134,654	-		GFF1130	0.16	-0.6
1,134,654	-		GFF1130	0.16	-0.5
1,134,654	-		GFF1130	0.16	+0.2
1,134,654	-		GFF1130	0.16	-0.9
1,134,654	-		GFF1130	0.16	+0.5
1,134,654	-		GFF1130	0.16	-0.4
1,134,654	-		GFF1130	0.16	-0.2
1,134,655	+		GFF1130	0.16	-1.1
1,134,656	+		GFF1130	0.16	-0.7
1,134,659	-		GFF1130	0.16	-0.3
1,134,659	-		GFF1130	0.16	-0.7
1,134,673	+		GFF1130	0.17	-0.6
1,134,673	+		GFF1130	0.17	-0.0
1,134,673	+		GFF1130	0.17	-2.5
1,134,673	+		GFF1130	0.17	-0.3
1,134,673	+		GFF1130	0.17	+0.5
1,134,673	+		GFF1130	0.17	+1.2
1,134,681	-		GFF1130	0.18	+0.6
1,134,681	-		GFF1130	0.18	+0.5
1,134,686	-		GFF1130	0.18	+0.7
1,134,700	-		GFF1130	0.19	+0.2
1,134,700	-		GFF1130	0.19	-0.3
1,134,710	-		GFF1130	0.20	-2.7
1,134,711	+		GFF1130	0.20	-0.3
1,134,721	+		GFF1130	0.21	+0.2
1,134,721	+		GFF1130	0.21	+0.1
1,134,734	-		GFF1130	0.22	-0.7
1,134,746	+		GFF1130	0.23	+0.7
1,134,746	+		GFF1130	0.23	-1.3
1,134,746	+		GFF1130	0.23	-0.0
1,134,754	-		GFF1130	0.24	-0.5
1,134,756	-		GFF1130	0.24	+0.5
1,134,779	+		GFF1130	0.26	+1.9
1,134,787	-		GFF1130	0.26	-0.4
1,134,800	+		GFF1130	0.27	-1.6
1,134,802	-		GFF1130	0.28	-1.9
1,134,821	-		GFF1130	0.29	+0.2
1,134,831	-		GFF1130	0.30	-1.1
1,134,853	+		GFF1130	0.32	+0.8
1,134,853	+		GFF1130	0.32	+0.6
1,134,853	+		GFF1130	0.32	-0.9
1,134,861	-		GFF1130	0.32	-1.5
1,134,861	-		GFF1130	0.32	-2.0
1,134,863	+		GFF1130	0.32	-1.0
1,134,863	+		GFF1130	0.32	-0.5
1,134,863	+		GFF1130	0.32	+0.1
1,134,863	+		GFF1130	0.32	+1.7
1,134,871	-		GFF1130	0.33	-0.2
1,134,871	-		GFF1130	0.33	-0.0
1,134,871	-		GFF1130	0.33	-0.4
1,134,891	-		GFF1130	0.35	-0.3
1,134,905	+		GFF1130	0.36	-0.3
1,134,924	+		GFF1130	0.37	+0.8
1,134,932	-		GFF1130	0.38	-0.2
1,134,932	-		GFF1130	0.38	-1.3
1,134,932	-		GFF1130	0.38	+0.1
1,134,932	-		GFF1130	0.38	-0.7
1,134,951	+		GFF1130	0.39	+0.3
1,134,951	+		GFF1130	0.39	+1.2
1,134,951	+		GFF1130	0.39	+1.1
1,134,954	+		GFF1130	0.39	-1.7
1,134,954	+		GFF1130	0.39	+0.4
1,134,959	+		GFF1130	0.40	-0.9
1,134,959	+		GFF1130	0.40	+0.4
1,134,959	+		GFF1130	0.40	-0.3
1,134,959	+		GFF1130	0.40	-0.3
1,134,960	-		GFF1130	0.40	-1.0
1,134,962	-		GFF1130	0.40	+0.6
1,134,964	+		GFF1130	0.40	-0.7
1,134,966	+		GFF1130	0.40	+0.0
1,134,966	+		GFF1130	0.40	-1.3
1,134,967	-		GFF1130	0.40	-2.4
1,134,967	-		GFF1130	0.40	+0.5
1,134,967	-		GFF1130	0.40	-1.0
1,134,967	-		GFF1130	0.40	-2.6
1,134,988	+		GFF1130	0.42	-0.5
1,134,988	+		GFF1130	0.42	+0.9
1,134,988	+		GFF1130	0.42	-0.9
1,134,991	-		GFF1130	0.42	-0.4
1,134,996	-		GFF1130	0.43	+1.2
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1,135,392	-		GFF1130	0.74	+1.0
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1,135,456	-		GFF1130	0.79	-0.4
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1,135,461	-		GFF1130	0.79	+0.8
1,135,493	+		GFF1130	0.82	-2.7
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1,135,537	-		GFF1130	0.85	-0.5
1,135,564	-		GFF1130	0.87	-1.1
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1,135,596	+				-2.4
1,135,602	+				-0.4
1,135,604	-				-0.5
1,135,604	-				-0.6
1,135,604	-				+0.1
1,135,610	-				-0.1
1,135,636	+				-0.4
1,135,644	-				-0.9
1,135,649	+				+0.0
1,135,649	+				-1.4
1,135,649	+				+0.6
1,135,649	+				+0.4
1,135,649	+				-0.4
1,135,654	+				-1.2
1,135,654	+				-0.7
1,135,654	+				-1.1
1,135,654	+				-0.3
1,135,654	+				-2.0
1,135,654	+				-2.6
1,135,657	-				-1.6
1,135,657	-				+0.5
1,135,657	-				-0.3
1,135,662	-				+0.5
1,135,662	-				-0.2
1,135,662	-				-0.3
1,135,662	-				-1.2
1,135,662	-				+0.1
1,135,662	-				+1.2
1,135,664	+				+0.3
1,135,691	+				-1.1
1,135,706	+				-0.7
1,135,719	+				-1.0
1,135,724	+				+1.5
1,135,727	-				+0.6
1,135,727	-				-0.4
1,135,731	-				-0.5
1,135,732	-				-0.5
1,135,733	-				-2.0
1,135,763	-				-1.7
1,135,766	+				-1.5
1,135,766	+				-0.8
1,135,774	-				+1.4
1,135,776	+				-1.5
1,135,779	-				+0.2
1,135,779	-				-1.3
1,135,779	-				+1.6
1,135,779	-				-1.2
1,135,802	-				-1.7
1,135,811	+				+0.1
1,135,811	+				+1.0
1,135,811	+				-1.1
1,135,811	+				-1.0
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