Strain Fitness in Sphingobium sp. HT1-2 around GFF1102

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,102,660	+				-1.8
1,102,714	+				-0.7
1,102,717	-				+1.1
1,102,722	-				+0.2
1,102,744	+				+0.4
1,102,829	-				-0.4
1,102,843	+				+0.7
1,102,843	+				-0.0
1,102,843	+				+1.6
1,102,843	+				+0.4
1,102,845	+				-0.1
1,102,845	+				+0.9
1,102,845	+				-0.1
1,102,850	+				-1.8
1,102,851	-				+0.7
1,102,851	-				+0.1
1,102,853	-				-0.4
1,102,861	+				+1.0
1,102,864	+				+0.6
1,102,879	+				-0.8
1,102,879	+				+0.3
1,102,879	+				+0.0
1,102,879	+				-0.7
1,102,889	+				-1.0
1,102,897	-				-0.2
1,102,898	+				+0.6
1,102,898	+				+1.3
1,102,901	-				-0.1
1,102,906	-		GFF1102	0.10	-1.1
1,102,915	+		GFF1102	0.11	+0.9
1,102,949	+		GFF1102	0.14	+0.5
1,102,949	+		GFF1102	0.14	+0.4
1,102,949	+		GFF1102	0.14	+0.1
1,102,949	+		GFF1102	0.14	+0.6
1,102,950	+		GFF1102	0.14	-0.4
1,102,957	-		GFF1102	0.15	-1.1
1,102,957	-		GFF1102	0.15	-0.7
1,102,978	-		GFF1102	0.16	-1.5
1,102,978	-		GFF1102	0.16	+0.1
1,102,978	-		GFF1102	0.16	+0.1
1,102,978	-		GFF1102	0.16	+1.3
1,103,007	+		GFF1102	0.19	-0.4
1,103,014	+		GFF1102	0.19	-2.4
1,103,018	+		GFF1102	0.20	+0.3
1,103,018	+		GFF1102	0.20	+1.3
1,103,018	+		GFF1102	0.20	-0.7
1,103,018	+		GFF1102	0.20	-0.3
1,103,026	-		GFF1102	0.21	-0.2
1,103,026	-		GFF1102	0.21	+0.1
1,103,026	-		GFF1102	0.21	-1.9
1,103,026	-		GFF1102	0.21	+1.7
1,103,026	-		GFF1102	0.21	-1.1
1,103,027	-		GFF1102	0.21	-1.1
1,103,032	-		GFF1102	0.21	-1.6
1,103,037	+		GFF1102	0.21	+0.4
1,103,042	+		GFF1102	0.22	+0.6
1,103,050	-		GFF1102	0.23	-0.4
1,103,059	-		GFF1102	0.23	-1.3
1,103,097	-		GFF1102	0.27	+0.0
1,103,097	-		GFF1102	0.27	+0.5
1,103,108	+		GFF1102	0.28	-1.2
1,103,108	+		GFF1102	0.28	-2.7
1,103,112	+		GFF1102	0.28	-0.6
1,103,116	-		GFF1102	0.28	-0.1
1,103,118	+		GFF1102	0.29	-0.1
1,103,118	+		GFF1102	0.29	-1.4
1,103,118	+		GFF1102	0.29	-1.1
1,103,126	-		GFF1102	0.29	+0.5
1,103,126	-		GFF1102	0.29	-0.8
1,103,126	-		GFF1102	0.29	-2.5
1,103,131	+		GFF1102	0.30	+0.5
1,103,133	+		GFF1102	0.30	-1.5
1,103,133	+		GFF1102	0.30	+0.4
1,103,141	-		GFF1102	0.31	+0.4
1,103,141	-		GFF1102	0.31	-1.0
1,103,143	-		GFF1102	0.31	-1.4
1,103,145	-		GFF1102	0.31	+1.1
1,103,145	-		GFF1102	0.31	-1.9
1,103,147	-		GFF1102	0.31	-0.4
1,103,155	-		GFF1102	0.32	+1.0
1,103,157	+		GFF1102	0.32	-0.3
1,103,157	+		GFF1102	0.32	-0.7
1,103,157	+		GFF1102	0.32	-1.1
1,103,157	+		GFF1102	0.32	-1.3
1,103,157	+		GFF1102	0.32	-1.2
1,103,157	+		GFF1102	0.32	-0.7
1,103,157	+		GFF1102	0.32	+1.3
1,103,157	+		GFF1102	0.32	+0.5
1,103,161	-		GFF1102	0.32	+0.8
1,103,186	-		GFF1102	0.34	-1.1
1,103,199	+		GFF1102	0.36	-0.3
1,103,199	+		GFF1102	0.36	-0.1
1,103,201	+		GFF1102	0.36	-1.6
1,103,201	+		GFF1102	0.36	-1.6
1,103,202	-		GFF1102	0.36	-2.2
1,103,202	-		GFF1102	0.36	-1.0
1,103,202	-		GFF1102	0.36	-0.0
1,103,202	-		GFF1102	0.36	+0.0
1,103,207	-		GFF1102	0.36	+0.1
1,103,209	-		GFF1102	0.36	-0.7
1,103,209	-		GFF1102	0.36	-0.2
1,103,220	+		GFF1102	0.37	-2.1
1,103,236	+		GFF1102	0.39	-1.5
1,103,249	+		GFF1102	0.40	+1.3
1,103,267	+		GFF1102	0.42	-0.2
1,103,299	+		GFF1102	0.44	-0.1
1,103,314	-		GFF1102	0.46	-0.3
1,103,349	+		GFF1102	0.49	+0.6
1,103,349	-		GFF1102	0.49	+0.2
1,103,350	+		GFF1102	0.49	-0.7
1,103,350	+		GFF1102	0.49	-0.5
1,103,359	+		GFF1102	0.50	+0.8
1,103,365	-		GFF1102	0.50	-0.5
1,103,367	-		GFF1102	0.50	+1.0
1,103,367	-		GFF1102	0.50	+0.2
1,103,368	-		GFF1102	0.50	-0.2
1,103,375	-		GFF1102	0.51	-2.9
1,103,375	-		GFF1102	0.51	+0.2
1,103,399	+		GFF1102	0.53	-0.1
1,103,401	+		GFF1102	0.53	+0.1
1,103,404	-		GFF1102	0.53	-1.3
1,103,413	+		GFF1102	0.54	-1.3
1,103,416	-		GFF1102	0.54	-0.6
1,103,449	-		GFF1102	0.57	+1.7
1,103,450	-		GFF1102	0.57	-0.2
1,103,450	-		GFF1102	0.57	+0.1
1,103,467	-		GFF1102	0.59	+0.1
1,103,467	-		GFF1102	0.59	+1.3
1,103,472	+		GFF1102	0.59	+0.8
1,103,482	-		GFF1102	0.60	+0.2
1,103,489	+		GFF1102	0.61	-0.3
1,103,490	+		GFF1102	0.61	+0.5
1,103,490	+		GFF1102	0.61	+0.1
1,103,490	+		GFF1102	0.61	-0.4
1,103,498	+		GFF1102	0.62	+1.4
1,103,498	-		GFF1102	0.62	-0.3
1,103,498	-		GFF1102	0.62	-1.2
1,103,498	-		GFF1102	0.62	+0.7
1,103,498	-		GFF1102	0.62	-0.0
1,103,498	-		GFF1102	0.62	+0.2
1,103,506	-		GFF1102	0.62	+0.3
1,103,506	-		GFF1102	0.62	+0.3
1,103,506	-		GFF1102	0.62	+0.2
1,103,509	-		GFF1102	0.63	-0.9
1,103,539	+		GFF1102	0.65	-0.0
1,103,542	-		GFF1102	0.65	-1.5
1,103,547	-		GFF1102	0.66	+0.8
1,103,547	-		GFF1102	0.66	-0.7
1,103,554	-		GFF1102	0.66	+1.2
1,103,565	-		GFF1102	0.67	-0.1
1,103,566	-		GFF1102	0.68	+0.4
1,103,566	-		GFF1102	0.68	+0.3
1,103,571	-		GFF1102	0.68	+0.6
1,103,576	+		GFF1102	0.68	-0.4
1,103,576	+		GFF1102	0.68	-0.4
1,103,576	+		GFF1102	0.68	-2.0
1,103,576	+		GFF1102	0.68	-0.8
1,103,576	+		GFF1102	0.68	-1.6
1,103,576	+		GFF1102	0.68	+1.8
1,103,576	+		GFF1102	0.68	+0.0
1,103,577	+		GFF1102	0.68	-1.0
1,103,584	-		GFF1102	0.69	-0.2
1,103,584	-		GFF1102	0.69	-1.0
1,103,584	-		GFF1102	0.69	+0.3
1,103,584	-		GFF1102	0.69	-1.2
1,103,584	-		GFF1102	0.69	-0.4
1,103,597	+		GFF1102	0.70	-0.4
1,103,621	-		GFF1102	0.72	-0.1
1,103,638	-		GFF1102	0.74	-0.1
1,103,638	-		GFF1102	0.74	-0.5
1,103,638	-		GFF1102	0.74	-2.2
1,103,660	-		GFF1102	0.76	+1.7
1,103,664	-		GFF1102	0.76	+0.1
1,103,671	+		GFF1102	0.77	-0.2
1,103,671	+		GFF1102	0.77	-0.6
1,103,671	+		GFF1102	0.77	-0.1
1,103,679	-		GFF1102	0.77	-1.9
1,103,682	+		GFF1102	0.78	+0.6
1,103,684	-		GFF1102	0.78	-0.6
1,103,703	-		GFF1102	0.79	-0.3
1,103,710	+		GFF1102	0.80	-0.1
1,103,710	+		GFF1102	0.80	-0.7
1,103,715	+		GFF1102	0.81	-0.7
1,103,718	-		GFF1102	0.81	-0.8
1,103,718	-		GFF1102	0.81	-1.9
1,103,718	-		GFF1102	0.81	-0.4
1,103,718	-		GFF1102	0.81	-0.4
1,103,718	-		GFF1102	0.81	+1.2
1,103,718	-		GFF1102	0.81	-1.9
1,103,728	-		GFF1102	0.82	-0.8
1,103,734	-		GFF1102	0.82	+1.2
1,103,735	-		GFF1102	0.82	-1.1
1,103,755	+		GFF1102	0.84	+1.9
1,103,755	+		GFF1102	0.84	-0.2
1,103,760	+		GFF1102	0.84	+0.4
1,103,760	+		GFF1102	0.84	+1.6
1,103,763	-		GFF1102	0.85	-0.1
1,103,763	-		GFF1102	0.85	+0.7
1,103,763	-		GFF1102	0.85	-0.4
1,103,768	-		GFF1102	0.85	-0.1
1,103,768	-		GFF1102	0.85	+0.1
1,103,777	+		GFF1102	0.86	+0.9
1,103,777	+		GFF1102	0.86	-0.7
1,103,777	+		GFF1102	0.86	-0.9
1,103,799	+		GFF1102	0.88	-0.5
1,103,799	+		GFF1102	0.88	+1.1
1,103,804	+		GFF1102	0.88	+0.7
1,103,809	+		GFF1102	0.89	-0.1
1,103,812	-		GFF1102	0.89	-0.4
1,103,815	+		GFF1102	0.89	+0.2
1,103,817	-		GFF1102	0.89	-0.0
1,103,817	-		GFF1102	0.89	+1.7
1,103,817	-		GFF1102	0.89	+0.3
1,103,820	+		GFF1102	0.90	+0.7
1,103,833	-				+0.8
1,103,836	+				+0.2
1,103,836	+				+0.0
1,103,854	-				-1.3
1,103,863	+				+1.0
1,103,865	-				-1.1
1,103,870	-				-0.1
1,103,877	+				-0.7
1,103,882	+				+0.4
1,103,884	-				+0.5
1,103,890	+				+0.7
1,103,895	+				-0.9
1,103,895	+				+0.3
1,103,895	+				+0.8
1,103,895	+				+0.8
1,103,895	+				+0.2
1,103,895	+				-1.7
1,103,895	+				-0.1
1,103,895	+				+0.6
1,103,895	+				-0.5
1,103,903	-				-0.5
1,103,903	-				-0.9
1,103,903	-				-0.6
1,103,910	+				+0.7
1,103,910	+				-0.0
1,103,910	+				-0.6
1,103,910	+				-0.3
1,103,910	+				+0.4
1,103,910	+				-0.6
1,103,910	+				+1.6
1,103,910	+				-2.5
1,103,910	+				-1.1
1,103,910	+				-0.1
1,103,910	+				-0.3
1,103,918	-				+1.2
1,103,918	-				-1.4
1,103,918	-				-0.2
1,103,918	-				+1.1
1,103,918	-				+1.0
1,103,918	-				-2.4
1,103,918	-				+0.6
1,103,918	-				-0.3
1,103,932	+				+1.3
1,103,942	+				-0.6
1,103,945	+				+0.4
1,103,947	+				-1.8
1,103,955	-				+0.0
1,103,962	+				+0.4
1,103,966	+				-0.4
1,103,967	+				+0.4
1,103,967	+				-1.5
1,103,970	-				-0.5
1,103,970	-				-1.7
1,103,975	-				-0.8
1,103,975	-				-0.8
1,103,989	+				+1.4
1,103,989	-				-1.8
1,104,002	+				-1.7
1,104,036	+				+1.5
1,104,036	+				+1.0
1,104,036	+				+0.8
1,104,044	-				-0.4
1,104,044	-				-0.7
1,104,044	-				+0.2
1,104,071	-				-0.2
1,104,119	+				+0.6
1,104,122	-				+0.3
1,104,140	+				-0.5
1,104,146	-				+0.3
1,104,146	-				+0.2
1,104,149	+				-0.3
1,104,248	+				-2.4
1,104,250	+				-0.4
1,104,284	+				+0.0
1,104,291	+				+0.4
1,104,293	+				+0.6
1,104,297	+				-1.5
1,104,316	-				-0.6
1,104,316	-				-1.1
1,104,335	+				-1.9
1,104,337	+				-1.9
1,104,337	+				+1.2
1,104,343	-				-0.6
1,104,343	-				+0.8
1,104,345	+				-1.6
1,104,345	-				-0.2
1,104,349	+				-1.4
1,104,349	+				+0.7
1,104,357	-				-1.5
1,104,360	+				-0.5
1,104,368	-				-0.5
1,104,370	+				-0.1
1,104,375	+				-1.0
1,104,375	+				-0.2
1,104,382	+				-0.5
1,104,382	+				-0.4
1,104,382	+				-2.2
1,104,382	+				+0.5
1,104,382	+				-1.4
1,104,390	-				-2.9
1,104,392	+				+1.2
1,104,400	-				+0.8
1,104,400	-				-0.6
1,104,400	-				+0.4
1,104,410	-				+0.1
1,104,410	-				+0.3
1,104,415	+				+0.2
1,104,422	+				-0.4
1,104,422	+				-1.5
1,104,422	+				-0.8
1,104,422	+				-0.5
1,104,422	+				+0.0
1,104,436	+		GFF1103	0.10	-0.1
1,104,483	+		GFF1103	0.12	+0.6
1,104,497	+		GFF1103	0.13	-0.3
1,104,524	+		GFF1103	0.14	+1.0
1,104,533	-		GFF1103	0.14	+0.6
1,104,594	-		GFF1103	0.16	-2.0
1,104,620	-		GFF1103	0.17	+0.3
1,104,631	+		GFF1103	0.18	+0.1
1,104,632	-		GFF1103	0.18	+0.8
1,104,639	-		GFF1103	0.18	-1.8
1,104,676	+		GFF1103	0.20	-0.7
1,104,676	+		GFF1103	0.20	+1.2
1,104,738	+		GFF1103	0.22	+0.7
1,104,744	+		GFF1103	0.22	+1.3
1,104,761	+		GFF1103	0.23	-0.5
1,104,790	-		GFF1103	0.24	+0.7
1,104,815	+		GFF1103	0.25	+0.3
1,104,815	+		GFF1103	0.25	+0.2
1,104,823	+		GFF1103	0.25	+0.4
1,104,853	+		GFF1103	0.26	-1.0
1,104,861	+		GFF1103	0.27	+0.4
1,104,861	+		GFF1103	0.27	+0.0
1,104,861	+		GFF1103	0.27	-0.3
1,104,869	-		GFF1103	0.27	+0.3
1,104,869	-		GFF1103	0.27	-0.1
1,104,887	-		GFF1103	0.28	+0.1
1,104,892	+		GFF1103	0.28	-1.5