Strain Fitness in Sphingobium sp. HT1-2 around GFF1055

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,060,193	+		GFF1053	0.75	-2.2
1,060,196	-		GFF1053	0.75	-2.8
1,060,216	+		GFF1053	0.77	-2.2
1,060,216	+		GFF1053	0.77	-2.8
1,060,224	-		GFF1053	0.77	-1.6
1,060,224	-		GFF1053	0.77	-1.6
1,060,224	-		GFF1053	0.77	-1.7
1,060,242	+		GFF1053	0.79	-1.6
1,060,294	+		GFF1053	0.83	-2.1
1,060,300	+		GFF1053	0.83	-1.4
1,060,387	-				-2.7
1,060,394	+				-2.1
1,060,394	+				-1.5
1,060,406	+				-1.4
1,060,409	-				-1.9
1,060,488	-				-3.6
1,060,512	-				-1.4
1,060,530	+				-0.5
1,060,545	+				-0.7
1,060,545	+				-0.8
1,060,545	+				+0.4
1,060,553	-				+1.0
1,060,553	-				+0.1
1,060,553	-				-1.1
1,060,553	-				+0.6
1,060,568	+				+0.8
1,061,174	+				-0.8
1,061,174	+				-1.9
1,061,174	+				-0.0
1,061,174	+				-0.2
1,061,174	+				-0.7
1,061,174	+				+0.4
1,061,174	+				-1.7
1,061,174	+				+0.0
1,061,174	+				-1.4
1,061,174	+				+1.1
1,061,174	+				-0.2
1,061,182	-				-0.9
1,061,182	-				+0.0
1,061,182	-				-1.5
1,061,182	-				-3.0
1,061,182	-				-0.6
1,061,182	-				-0.2
1,061,182	-				+0.4
1,061,182	-				-0.4
1,061,182	-				-0.9
1,061,213	+				-0.7
1,061,218	+				+0.1
1,061,223	+				+0.5
1,061,231	+				-2.5
1,061,231	+				-0.7
1,061,231	+				-0.2
1,061,231	+				+1.0
1,061,231	+				+1.0
1,061,231	-				+0.8
1,061,239	-				+0.7
1,061,246	+				+0.6
1,061,248	+				+0.6
1,061,249	-				+0.2
1,061,267	+				+0.4
1,061,275	-		GFF1055	0.10	+0.6
1,061,292	+		GFF1055	0.12	+1.5
1,061,294	+		GFF1055	0.12	+1.5
1,061,300	-		GFF1055	0.13	-1.2
1,061,300	-		GFF1055	0.13	+0.3
1,061,313	-		GFF1055	0.14	-0.2
1,061,358	+		GFF1055	0.19	-1.1
1,061,424	+		GFF1055	0.26	+1.1
1,061,445	+		GFF1055	0.28	-0.6
1,061,445	+		GFF1055	0.28	-0.7
1,061,455	+		GFF1055	0.29	+2.3
1,061,456	-		GFF1055	0.29	+0.2
1,061,457	+		GFF1055	0.29	-0.5
1,061,467	+		GFF1055	0.30	+0.9
1,061,467	+		GFF1055	0.30	-1.7
1,061,467	+		GFF1055	0.30	+0.1
1,061,467	+		GFF1055	0.30	-0.0
1,061,467	+		GFF1055	0.30	+0.2
1,061,475	-		GFF1055	0.31	-0.3
1,061,477	+		GFF1055	0.31	-0.7
1,061,480	-		GFF1055	0.31	+0.0
1,061,490	-		GFF1055	0.33	+0.7
1,061,509	-		GFF1055	0.34	+0.7
1,061,509	-		GFF1055	0.34	+0.0
1,061,535	+		GFF1055	0.37	+0.4
1,061,543	-		GFF1055	0.38	-1.0
1,061,543	-		GFF1055	0.38	-0.4
1,061,543	-		GFF1055	0.38	+0.4
1,061,543	-		GFF1055	0.38	-2.5
1,061,543	-		GFF1055	0.38	+0.4
1,061,553	+		GFF1055	0.39	-0.0
1,061,561	-		GFF1055	0.40	+0.7
1,061,566	+		GFF1055	0.40	-0.7
1,061,572	+		GFF1055	0.41	-0.8
1,061,594	+		GFF1055	0.43	-0.4
1,061,597	+		GFF1055	0.44	-1.5
1,061,612	-		GFF1055	0.45	-0.4
1,061,652	-		GFF1055	0.49	+0.6
1,061,658	+		GFF1055	0.50	+1.1
1,061,662	+		GFF1055	0.50	+0.4
1,061,680	-		GFF1055	0.52	-1.0
1,061,680	-		GFF1055	0.52	+0.3
1,061,689	+		GFF1055	0.53	+0.0
1,061,689	+		GFF1055	0.53	+0.2
1,061,689	+		GFF1055	0.53	-0.1
1,061,689	+		GFF1055	0.53	-0.8
1,061,689	+		GFF1055	0.53	-2.2
1,061,689	+		GFF1055	0.53	-2.2
1,061,695	+		GFF1055	0.54	+0.1
1,061,697	-		GFF1055	0.54	-1.2
1,061,697	-		GFF1055	0.54	-0.8
1,061,697	-		GFF1055	0.54	-0.6
1,061,697	-		GFF1055	0.54	-0.5
1,061,697	-		GFF1055	0.54	+0.8
1,061,697	-		GFF1055	0.54	+0.3
1,061,697	-		GFF1055	0.54	-1.1
1,061,697	-		GFF1055	0.54	-0.9
1,061,697	-		GFF1055	0.54	+0.2
1,061,702	+		GFF1055	0.55	-0.3
1,061,703	-		GFF1055	0.55	+0.9
1,061,705	+		GFF1055	0.55	-1.5
1,061,705	+		GFF1055	0.55	-0.4
1,061,708	-		GFF1055	0.55	+1.1
1,061,710	-		GFF1055	0.55	-0.8
1,061,713	-		GFF1055	0.56	+0.1
1,061,713	-		GFF1055	0.56	+0.5
1,061,713	-		GFF1055	0.56	+0.6
1,061,720	+		GFF1055	0.56	-0.0
1,061,726	-		GFF1055	0.57	-0.1
1,061,728	-		GFF1055	0.57	-0.6
1,061,728	-		GFF1055	0.57	-1.8
1,061,752	-		GFF1055	0.60	-0.4
1,061,787	+		GFF1055	0.63	+0.1
1,061,795	-		GFF1055	0.64	-0.8
1,061,795	-		GFF1055	0.64	+1.0
1,061,813	-		GFF1055	0.66	+0.5
1,061,839	-		GFF1055	0.69	-0.5
1,061,841	-		GFF1055	0.69	-0.3
1,061,841	-		GFF1055	0.69	-0.3
1,061,841	-		GFF1055	0.69	+0.6
1,061,848	+		GFF1055	0.70	-1.9
1,061,893	-		GFF1055	0.74	+1.3
1,061,902	+		GFF1055	0.75	-0.7
1,061,904	+		GFF1055	0.75	-0.6
1,061,904	+		GFF1055	0.75	-0.6
1,061,907	-		GFF1055	0.76	-1.4
1,061,909	+		GFF1055	0.76	-2.6
1,061,909	+		GFF1055	0.76	-0.5
1,061,909	+		GFF1055	0.76	-1.0
1,061,909	+		GFF1055	0.76	+0.6
1,061,909	+		GFF1055	0.76	-1.4
1,061,909	+		GFF1055	0.76	+0.4
1,061,912	-		GFF1055	0.76	-0.2
1,061,912	-		GFF1055	0.76	+0.1
1,061,912	-		GFF1055	0.76	+0.2
1,061,917	-		GFF1055	0.77	-0.4
1,061,917	-		GFF1055	0.77	-1.6
1,061,917	-		GFF1055	0.77	+0.1
1,061,917	-		GFF1055	0.77	-0.7
1,061,917	-		GFF1055	0.77	+1.2
1,061,950	-		GFF1055	0.80	-0.9
1,061,951	+		GFF1055	0.80	-0.6
1,061,966	+		GFF1055	0.82	-1.9
1,061,971	+		GFF1055	0.82	-1.9
1,061,974	-		GFF1055	0.83	+0.1
1,061,979	-		GFF1055	0.83	-0.8
1,061,984	-		GFF1055	0.84	+0.1
1,061,986	-		GFF1055	0.84	+0.8
1,062,038	+		GFF1055	0.89	-0.1
1,062,040	+		GFF1055	0.90	+1.0
1,062,041	-		GFF1055	0.90	+0.8
1,062,046	-				+0.2
1,062,046	-				-0.7
1,062,059	+				+0.2
1,062,081	+				+0.7
1,062,094	+				+0.1
1,062,105	+				-1.0
1,062,105	+				+0.5
1,062,113	-				-0.3
1,062,113	-				-0.0
1,062,113	-				+1.0
1,062,113	-				-0.4
1,062,113	-				+0.3
1,062,113	-				-0.1
1,062,113	-				+0.3
1,062,210	+		GFF1056	0.59	+0.8
1,062,274	-				-2.0
1,062,361	-		GFF1057	0.10	-0.1
1,062,377	-		GFF1057	0.12	-1.9
1,062,380	-		GFF1057	0.13	-1.6
1,062,392	+		GFF1057	0.15	-0.3
1,062,392	+		GFF1057	0.15	+1.1
1,062,392	+		GFF1057	0.15	+0.5
1,062,400	-		GFF1057	0.16	+1.9
1,062,400	-		GFF1057	0.16	-0.5
1,062,400	-		GFF1057	0.16	+0.0
1,062,400	-		GFF1057	0.16	-0.4
1,062,400	-		GFF1057	0.16	+0.8
1,062,410	+		GFF1057	0.17	-0.8
1,062,415	+		GFF1057	0.18	+0.2
1,062,420	+		GFF1057	0.19	-0.1
1,062,420	+		GFF1057	0.19	-0.2
1,062,423	-		GFF1057	0.19	-1.4
1,062,425	-		GFF1057	0.19	+0.7
1,062,427	+		GFF1057	0.20	-0.1
1,062,428	-		GFF1057	0.20	+1.8
1,062,432	+		GFF1057	0.20	+0.7
1,062,433	-		GFF1057	0.20	-1.8
1,062,433	-		GFF1057	0.20	-0.8
1,062,434	+		GFF1057	0.21	-2.9
1,062,439	+		GFF1057	0.21	-0.3
1,062,442	-		GFF1057	0.22	+0.9
1,062,442	-		GFF1057	0.22	+1.0
1,062,442	-		GFF1057	0.22	-0.4
1,062,442	-		GFF1057	0.22	+0.8
1,062,442	-		GFF1057	0.22	+0.8
1,062,466	+		GFF1057	0.25	-0.2
1,062,474	-		GFF1057	0.26	-0.2
1,062,477	+		GFF1057	0.27	-0.5
1,062,477	+		GFF1057	0.27	+0.1
1,062,477	+		GFF1057	0.27	-0.8
1,062,477	+		GFF1057	0.27	-0.7
1,062,477	+		GFF1057	0.27	-1.4
1,062,477	+		GFF1057	0.27	+0.4
1,062,477	+		GFF1057	0.27	-0.8
1,062,482	+		GFF1057	0.27	+0.1
1,062,482	+		GFF1057	0.27	-1.0
1,062,485	-		GFF1057	0.28	-0.5
1,062,485	-		GFF1057	0.28	-1.2
1,062,485	-		GFF1057	0.28	+0.2
1,062,485	-		GFF1057	0.28	-1.5
1,062,485	-		GFF1057	0.28	-1.1
1,062,485	-		GFF1057	0.28	+0.1
1,062,485	-		GFF1057	0.28	+0.4
1,062,485	-		GFF1057	0.28	-1.4
1,062,485	-		GFF1057	0.28	-0.2
1,062,487	+		GFF1057	0.28	+0.4
1,062,487	+		GFF1057	0.28	-1.7
1,062,490	-		GFF1057	0.29	-0.4
1,062,490	-		GFF1057	0.29	+0.2
1,062,490	-		GFF1057	0.29	-2.1
1,062,495	-		GFF1057	0.29	-0.5
1,062,495	-		GFF1057	0.29	-0.5
1,062,496	+		GFF1057	0.29	-0.2
1,062,536	-		GFF1057	0.35	+1.3
1,062,565	+		GFF1057	0.39	+0.3
1,062,587	-		GFF1057	0.42	-0.6
1,062,609	-		GFF1057	0.46	-1.4
1,062,614	-		GFF1057	0.46	+0.1
1,062,672	+		GFF1057	0.55	-1.1
1,062,672	+		GFF1057	0.55	-1.6
1,062,672	+		GFF1057	0.55	-0.6
1,062,672	+		GFF1057	0.55	+1.2
1,062,672	+		GFF1057	0.55	-0.4
1,062,672	+		GFF1057	0.55	+0.1
1,062,672	+		GFF1057	0.55	-0.1
1,062,677	+		GFF1057	0.55	-0.6
1,062,680	-		GFF1057	0.56	+0.8
1,062,680	-		GFF1057	0.56	+1.1
1,062,680	-		GFF1057	0.56	-0.4
1,062,680	-		GFF1057	0.56	-0.3
1,062,680	-		GFF1057	0.56	-0.4
1,062,680	-		GFF1057	0.56	-0.2
1,062,680	-		GFF1057	0.56	+0.1
1,062,730	+		GFF1057	0.63	-0.0
1,062,730	+		GFF1057	0.63	+0.5
1,062,737	-		GFF1057	0.64	+0.2
1,062,738	-		GFF1057	0.64	+0.0
1,062,738	-		GFF1057	0.64	+0.2
1,062,738	-		GFF1057	0.64	-2.1
1,062,796	+		GFF1057	0.72	+1.6
1,062,805	+		GFF1057	0.74	+0.9
1,062,813	-		GFF1057	0.75	-2.8
1,062,825	-		GFF1057	0.77	-1.9
1,062,831	+		GFF1057	0.77	-0.5
1,062,832	+		GFF1057	0.78	+1.0
1,062,837	-		GFF1057	0.78	-0.1
1,062,844	+		GFF1057	0.79	+1.0
1,062,844	+		GFF1057	0.79	+0.6
1,062,887	+		GFF1057	0.85	+1.2
1,062,887	+		GFF1057	0.85	+0.2
1,062,887	+		GFF1057	0.85	-0.0
1,062,887	+		GFF1057	0.85	+0.1
1,062,894	-		GFF1057	0.86	-1.3
1,062,895	-		GFF1057	0.87	-0.3
1,062,895	-		GFF1057	0.87	+0.6
1,062,913	+		GFF1057	0.89	+0.0
1,062,937	-				-0.8
1,062,966	+				-1.4
1,062,973	+				-0.4
1,062,973	+				+0.0
1,062,973	+				-0.8
1,062,976	-				-0.7
1,062,976	-				+0.2
1,062,976	-				+0.1
1,062,981	-				-1.4
1,062,981	-				-0.4
1,062,981	-				+0.0
1,062,981	-				-1.1
1,062,981	-				+0.0
1,062,987	+				+1.0
1,062,987	+				-0.4
1,062,987	+				-2.5
1,062,992	+				+0.3
1,062,995	-				+0.6
1,063,000	-				+0.2
1,063,001	-				+0.4
1,063,062	+				-1.1
1,063,062	+				+0.5
1,063,062	+				-0.2
1,063,065	-				-1.4
1,063,067	+		GFF1058	0.10	+0.4
1,063,070	-		GFF1058	0.10	+0.5
1,063,070	-		GFF1058	0.10	-1.5
1,063,072	+		GFF1058	0.11	-0.4
1,063,072	+		GFF1058	0.11	+0.6
1,063,072	+		GFF1058	0.11	-2.5
1,063,072	+		GFF1058	0.11	-0.3
1,063,072	+		GFF1058	0.11	-0.3
1,063,075	-		GFF1058	0.11	+0.7
1,063,075	-		GFF1058	0.11	+0.7
1,063,080	+		GFF1058	0.12	+2.1
1,063,080	-		GFF1058	0.12	-0.6
1,063,080	-		GFF1058	0.12	+0.1
1,063,080	-		GFF1058	0.12	+0.5
1,063,080	-		GFF1058	0.12	-0.4
1,063,080	-		GFF1058	0.12	-1.5
1,063,123	+		GFF1058	0.17	+0.5