Strain Fitness in Sphingobium sp. HT1-2 around GFF953

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF952 and GFF953 are separated by 13 nucleotidesGFF953 and GFF954 are separated by 97 nucleotides GFF952 - Gamma-glutamyl phosphate reductase (EC 1.2.1.41), at 951,909 to 953,174 GFF952 GFF953 - hypothetical protein, at 953,188 to 953,313 GFF953 GFF954 - Regulatory protein LuxR, at 953,411 to 954,511 GFF954 Position (kb) 953 954Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 952.211 kb on - strand, within GFF952at 952.235 kb on + strand, within GFF952at 952.245 kb on + strand, within GFF952at 952.255 kb on + strand, within GFF952at 952.263 kb on - strand, within GFF952at 952.274 kb on - strand, within GFF952at 952.286 kb on + strand, within GFF952at 952.294 kb on - strand, within GFF952at 952.301 kb on - strand, within GFF952at 952.324 kb on + strand, within GFF952at 952.324 kb on + strand, within GFF952at 952.325 kb on + strand, within GFF952at 952.331 kb on - strand, within GFF952at 952.332 kb on - strand, within GFF952at 952.332 kb on - strand, within GFF952at 952.332 kb on - strand, within GFF952at 952.332 kb on - strand, within GFF952at 952.332 kb on - strand, within GFF952at 952.332 kb on - strand, within GFF952at 952.332 kb on - strand, within GFF952at 952.341 kb on + strand, within GFF952at 952.370 kb on - strand, within GFF952at 952.384 kb on + strand, within GFF952at 952.437 kb on + strand, within GFF952at 952.453 kb on - strand, within GFF952at 952.500 kb on - strand, within GFF952at 952.526 kb on + strand, within GFF952at 952.541 kb on - strand, within GFF952at 952.558 kb on - strand, within GFF952at 952.603 kb on - strand, within GFF952at 952.617 kb on - strand, within GFF952at 952.620 kb on + strand, within GFF952at 952.620 kb on + strand, within GFF952at 952.651 kb on - strand, within GFF952at 952.674 kb on + strand, within GFF952at 952.716 kb on + strand, within GFF952at 952.730 kb on - strand, within GFF952at 952.730 kb on - strand, within GFF952at 952.745 kb on + strand, within GFF952at 952.780 kb on - strand, within GFF952at 952.806 kb on + strand, within GFF952at 952.806 kb on + strand, within GFF952at 952.835 kb on - strand, within GFF952at 952.857 kb on + strand, within GFF952at 952.884 kb on + strand, within GFF952at 952.891 kb on + strand, within GFF952at 952.901 kb on + strand, within GFF952at 952.971 kb on - strand, within GFF952at 952.976 kb on - strand, within GFF952at 952.981 kb on - strand, within GFF952at 952.981 kb on - strand, within GFF952at 953.031 kb on - strand, within GFF952at 953.042 kb on - strand, within GFF952at 953.107 kb on + strandat 953.122 kb on + strandat 953.147 kb on + strandat 953.167 kb on - strandat 953.167 kb on - strandat 953.239 kb on - strand, within GFF953at 953.296 kb on - strand, within GFF953at 953.318 kb on + strandat 953.441 kb on - strandat 953.459 kb on + strandat 953.473 kb on + strandat 953.481 kb on + strandat 953.486 kb on + strandat 953.486 kb on + strandat 953.486 kb on + strandat 953.486 kb on + strandat 953.486 kb on + strandat 953.494 kb on - strandat 953.508 kb on + strandat 953.601 kb on - strand, within GFF954at 953.622 kb on - strand, within GFF954at 953.670 kb on + strand, within GFF954at 953.678 kb on - strand, within GFF954at 953.678 kb on - strand, within GFF954at 953.683 kb on - strand, within GFF954at 953.732 kb on + strand, within GFF954at 953.778 kb on + strand, within GFF954at 953.780 kb on + strand, within GFF954at 953.780 kb on + strand, within GFF954at 953.780 kb on + strand, within GFF954at 953.788 kb on - strand, within GFF954at 953.788 kb on - strand, within GFF954at 953.788 kb on - strand, within GFF954at 953.788 kb on - strand, within GFF954at 953.788 kb on - strand, within GFF954at 953.788 kb on - strand, within GFF954at 953.801 kb on + strand, within GFF954at 953.801 kb on + strand, within GFF954at 953.816 kb on + strand, within GFF954at 953.824 kb on - strand, within GFF954at 953.843 kb on - strand, within GFF954at 953.879 kb on - strand, within GFF954at 953.904 kb on + strand, within GFF954at 953.904 kb on + strand, within GFF954at 953.912 kb on - strand, within GFF954at 953.912 kb on - strand, within GFF954at 953.912 kb on - strand, within GFF954at 953.912 kb on - strand, within GFF954at 953.945 kb on + strand, within GFF954at 953.952 kb on + strand, within GFF954at 953.961 kb on + strand, within GFF954at 953.997 kb on + strand, within GFF954at 954.015 kb on - strand, within GFF954at 954.027 kb on + strand, within GFF954at 954.040 kb on + strand, within GFF954at 954.040 kb on + strand, within GFF954at 954.049 kb on - strand, within GFF954at 954.066 kb on - strand, within GFF954at 954.066 kb on - strand, within GFF954at 954.079 kb on + strand, within GFF954at 954.087 kb on - strand, within GFF954at 954.100 kb on - strand, within GFF954at 954.106 kb on - strand, within GFF954at 954.118 kb on - strand, within GFF954at 954.136 kb on - strand, within GFF954at 954.136 kb on - strand, within GFF954at 954.180 kb on + strand, within GFF954at 954.194 kb on + strand, within GFF954at 954.202 kb on - strand, within GFF954at 954.240 kb on - strand, within GFF954

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate
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952,211 - GFF952 0.24 -3.1
952,235 + GFF952 0.26 -2.0
952,245 + GFF952 0.27 -2.0
952,255 + GFF952 0.27 -0.8
952,263 - GFF952 0.28 -2.3
952,274 - GFF952 0.29 -2.2
952,286 + GFF952 0.30 -1.9
952,294 - GFF952 0.30 -1.7
952,301 - GFF952 0.31 -2.5
952,324 + GFF952 0.33 -1.1
952,324 + GFF952 0.33 -2.5
952,325 + GFF952 0.33 -2.2
952,331 - GFF952 0.33 -2.6
952,332 - GFF952 0.33 -2.4
952,332 - GFF952 0.33 -3.2
952,332 - GFF952 0.33 -2.1
952,332 - GFF952 0.33 -1.0
952,332 - GFF952 0.33 -0.7
952,332 - GFF952 0.33 -2.7
952,332 - GFF952 0.33 -2.7
952,341 + GFF952 0.34 +0.0
952,370 - GFF952 0.36 -2.4
952,384 + GFF952 0.38 -3.3
952,437 + GFF952 0.42 -2.0
952,453 - GFF952 0.43 -2.5
952,500 - GFF952 0.47 -3.2
952,526 + GFF952 0.49 -3.3
952,541 - GFF952 0.50 +0.0
952,558 - GFF952 0.51 -2.1
952,603 - GFF952 0.55 -1.9
952,617 - GFF952 0.56 -3.0
952,620 + GFF952 0.56 -0.8
952,620 + GFF952 0.56 -2.8
952,651 - GFF952 0.59 -2.6
952,674 + GFF952 0.60 -2.9
952,716 + GFF952 0.64 -3.7
952,730 - GFF952 0.65 -0.9
952,730 - GFF952 0.65 -3.4
952,745 + GFF952 0.66 -4.1
952,780 - GFF952 0.69 -1.7
952,806 + GFF952 0.71 -1.4
952,806 + GFF952 0.71 -2.6
952,835 - GFF952 0.73 -1.2
952,857 + GFF952 0.75 -2.4
952,884 + GFF952 0.77 -2.3
952,891 + GFF952 0.78 -3.8
952,901 + GFF952 0.78 -3.0
952,971 - GFF952 0.84 -1.0
952,976 - GFF952 0.84 -3.3
952,981 - GFF952 0.85 -2.7
952,981 - GFF952 0.85 -2.8
953,031 - GFF952 0.89 -1.4
953,042 - GFF952 0.89 -0.2
953,107 + -1.1
953,122 + -0.7
953,147 + -2.3
953,167 - -1.4
953,167 - -2.1
953,239 - GFF953 0.40 -2.1
953,296 - GFF953 0.86 +1.6
953,318 + +2.1
953,441 - -0.1
953,459 + -0.2
953,473 + -0.8
953,481 + +0.3
953,486 + -0.5
953,486 + -0.8
953,486 + +0.2
953,486 + +0.2
953,486 + +0.9
953,494 - +0.8
953,508 + +0.9
953,601 - GFF954 0.17 +0.1
953,622 - GFF954 0.19 +0.9
953,670 + GFF954 0.24 -0.5
953,678 - GFF954 0.24 -0.0
953,678 - GFF954 0.24 -1.5
953,683 - GFF954 0.25 -0.1
953,732 + GFF954 0.29 -1.1
953,778 + GFF954 0.33 -1.7
953,780 + GFF954 0.34 +0.5
953,780 + GFF954 0.34 -0.6
953,780 + GFF954 0.34 -0.8
953,788 - GFF954 0.34 -0.3
953,788 - GFF954 0.34 -0.6
953,788 - GFF954 0.34 -0.5
953,788 - GFF954 0.34 +0.6
953,788 - GFF954 0.34 +0.2
953,788 - GFF954 0.34 +1.0
953,801 + GFF954 0.35 +0.8
953,801 + GFF954 0.35 -0.5
953,816 + GFF954 0.37 +2.0
953,824 - GFF954 0.38 +1.3
953,843 - GFF954 0.39 -1.7
953,879 - GFF954 0.43 +0.0
953,904 + GFF954 0.45 +0.3
953,904 + GFF954 0.45 -0.2
953,912 - GFF954 0.46 -1.3
953,912 - GFF954 0.46 -1.4
953,912 - GFF954 0.46 +0.1
953,912 - GFF954 0.46 +0.3
953,945 + GFF954 0.49 -0.5
953,952 + GFF954 0.49 +0.0
953,961 + GFF954 0.50 -0.5
953,997 + GFF954 0.53 +1.1
954,015 - GFF954 0.55 -1.5
954,027 + GFF954 0.56 +1.4
954,040 + GFF954 0.57 -0.0
954,040 + GFF954 0.57 -0.7
954,049 - GFF954 0.58 -0.3
954,066 - GFF954 0.59 -1.2
954,066 - GFF954 0.59 -0.5
954,079 + GFF954 0.61 +0.1
954,087 - GFF954 0.61 +0.1
954,100 - GFF954 0.63 +0.0
954,106 - GFF954 0.63 +0.2
954,118 - GFF954 0.64 +1.3
954,136 - GFF954 0.66 -0.1
954,136 - GFF954 0.66 -0.3
954,180 + GFF954 0.70 +0.8
954,194 + GFF954 0.71 +0.4
954,202 - GFF954 0.72 +0.4
954,240 - GFF954 0.75 +0.2

Or see this region's nucleotide sequence