Strain Fitness in Sphingobium sp. HT1-2 around GFF938

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
932,987	-		GFF936	0.65	-1.6
933,010	+		GFF936	0.70	-0.3
933,012	-		GFF936	0.71	-0.7
933,018	-		GFF936	0.72	+0.1
933,018	-		GFF936	0.72	-1.3
933,020	-		GFF936	0.73	-0.6
933,020	-		GFF936	0.73	+0.5
933,045	+		GFF936	0.78	-0.3
933,045	+		GFF936	0.78	+0.3
933,047	-		GFF936	0.79	-0.6
933,066	+		GFF936	0.83	-0.8
933,071	+		GFF936	0.84	+0.3
933,071	+		GFF936	0.84	+0.3
933,079	-		GFF936	0.86	+0.8
933,081	+		GFF936	0.86	-0.8
933,081	+		GFF936	0.86	+0.1
933,089	-		GFF936	0.88	+0.3
933,089	-		GFF936	0.88	+0.3
933,089	-		GFF936	0.88	-0.3
933,090	-		GFF936	0.88	-0.8
933,094	+		GFF936	0.89	-0.1
933,118	+				-1.7
933,118	+				-0.7
933,123	+				-0.1
933,131	-				-0.8
933,155	+				+0.6
933,159	-				-1.8
933,161	-				-1.4
933,169	+				+0.5
933,169	+				-0.1
933,179	+				-0.1
933,179	+				-1.7
933,179	+				-0.4
933,179	+				-2.3
933,187	-				-0.1
933,187	-				+0.1
933,187	-				-2.3
933,187	-				+0.3
933,202	+				-1.9
933,210	-				-0.5
933,225	+				-0.1
933,233	-				+1.3
933,233	-				-0.3
933,238	-				+0.3
933,238	-				-0.2
933,249	-				-0.0
933,259	-				-1.4
933,259	-				+0.2
933,265	+				-0.4
933,275	+				-1.6
933,286	+				-0.6
933,319	+				-0.8
933,319	+				+0.5
933,319	+				-0.6
933,327	-				-1.4
933,338	+				-0.7
933,354	+		GFF937	0.11	+0.4
933,354	+		GFF937	0.11	-0.8
933,354	+		GFF937	0.11	-0.8
933,381	+		GFF937	0.15	-0.6
933,389	-		GFF937	0.16	-1.6
933,393	-		GFF937	0.17	+0.7
933,394	-		GFF937	0.17	+1.1
933,428	+		GFF937	0.22	+0.1
933,436	-		GFF937	0.23	-0.6
933,448	-		GFF937	0.25	-0.3
933,461	+		GFF937	0.27	-0.5
933,469	-		GFF937	0.28	-1.2
933,471	+		GFF937	0.28	-0.7
933,471	+		GFF937	0.28	+1.2
933,471	+		GFF937	0.28	+0.2
933,471	+		GFF937	0.28	-0.7
933,476	+		GFF937	0.29	+0.6
933,476	+		GFF937	0.29	-1.0
933,479	-		GFF937	0.30	+0.2
933,479	-		GFF937	0.30	-0.3
933,479	-		GFF937	0.30	+1.1
933,479	-		GFF937	0.30	-1.0
933,479	-		GFF937	0.30	-1.2
933,484	-		GFF937	0.30	-1.3
933,484	-		GFF937	0.30	-2.7
933,515	-		GFF937	0.35	-0.8
933,517	+		GFF937	0.35	+1.0
933,523	+		GFF937	0.36	-2.8
933,523	+		GFF937	0.36	+0.3
933,531	-		GFF937	0.37	-0.7
933,531	-		GFF937	0.37	+0.7
933,541	+		GFF937	0.39	+1.3
933,541	+		GFF937	0.39	+0.1
933,542	+		GFF937	0.39	+0.3
933,546	+		GFF937	0.40	-0.8
933,570	+		GFF937	0.43	+0.4
933,600	-		GFF937	0.48	-0.2
933,613	-		GFF937	0.50	-0.6
933,653	+		GFF937	0.56	+0.1
933,661	-		GFF937	0.57	+0.9
933,694	-		GFF937	0.62	+0.8
933,701	+		GFF937	0.63	-1.5
933,702	-		GFF937	0.63	-1.2
933,709	-		GFF937	0.64	+0.4
933,715	-		GFF937	0.65	+0.6
933,715	-		GFF937	0.65	-0.3
933,732	+		GFF937	0.68	+0.3
933,733	-		GFF937	0.68	+0.5
933,738	-		GFF937	0.69	-0.7
933,746	+		GFF937	0.70	+0.9
933,746	+		GFF937	0.70	-0.3
933,754	-		GFF937	0.71	+1.3
933,765	+		GFF937	0.73	+1.2
933,781	+		GFF937	0.75	+0.2
933,792	+		GFF937	0.77	-1.8
933,833	-		GFF937	0.83	+0.6
933,843	+		GFF937	0.85	-0.6
933,857	-		GFF937	0.87	+0.4
933,861	+		GFF937	0.87	+0.7
933,886	+				+1.1
933,886	-				-0.6
933,892	+				-0.0
933,896	+				+1.0
933,913	+				-0.8
933,913	+				-0.6
933,913	+				+0.7
933,921	-				-0.8
933,921	-				+0.8
933,923	-				+0.2
933,929	-				+0.1
933,933	-				+1.1
933,937	+				+1.0
933,945	-				-2.0
933,945	-				+1.1
933,945	-				-0.1
933,992	+				-0.5
933,992	+				+0.7
933,992	+				-2.1
934,000	-				-0.1
934,005	+				-0.5
934,027	-		GFF938	0.14	+0.6
934,038	-		GFF938	0.16	+1.6
934,072	+		GFF938	0.25	-1.5
934,078	+		GFF938	0.26	+1.8
934,078	+		GFF938	0.26	+0.3
934,078	+		GFF938	0.26	-0.7
934,086	-		GFF938	0.28	-1.6
934,097	+		GFF938	0.31	+0.2
934,100	-		GFF938	0.32	-0.9
934,105	+		GFF938	0.33	+1.2
934,105	-		GFF938	0.33	+0.3
934,113	+		GFF938	0.35	-1.3
934,113	+		GFF938	0.35	-1.5
934,113	+		GFF938	0.35	+0.3
934,121	-		GFF938	0.37	-2.2
934,121	-		GFF938	0.37	+0.3
934,126	+		GFF938	0.38	+0.9
934,126	-		GFF938	0.38	+0.9
934,134	-		GFF938	0.40	-0.0
934,134	-		GFF938	0.40	-0.8
934,134	-		GFF938	0.40	-1.7
934,163	+		GFF938	0.48	-0.7
934,171	-		GFF938	0.50	-0.8
934,171	-		GFF938	0.50	+0.7
934,171	-		GFF938	0.50	-1.1
934,181	-		GFF938	0.52	-2.0
934,181	-		GFF938	0.52	-0.4
934,192	+		GFF938	0.55	-1.1
934,197	+		GFF938	0.56	-0.4
934,197	+		GFF938	0.56	+0.5
934,202	+		GFF938	0.57	+0.5
934,224	-		GFF938	0.63	-0.3
934,237	-		GFF938	0.66	-0.1
934,264	-		GFF938	0.73	+0.7
934,280	-		GFF938	0.77	-0.5
934,351	+				-0.7
934,369	+				-1.2
934,369	+				+1.5
934,369	+				-1.3
934,377	-				+0.0
934,441	-				+0.7
934,448	+				+0.6
934,448	+				-2.2
934,456	+				+1.0
934,456	-				-0.2
934,456	-				-0.5
934,461	+				-0.3
934,461	+				+1.0
934,461	+				-0.7
934,464	-				-1.7
934,469	-				-0.7
934,469	-				-0.0
934,475	+				-1.4
934,483	-				-2.2
934,485	+				-1.3
934,510	-				-0.6
934,514	+				+0.0
934,524	+				-1.2
934,537	-				+0.3
934,542	+				+0.5
934,542	+				+1.4
934,542	+				+1.1
934,550	-				+0.5
934,552	-				+1.0
934,574	-				+0.7
934,606	+				-0.3
934,613	+				-0.1
934,624	+				-0.7
934,624	+				-1.5
934,624	+				-0.4
934,624	+				+0.4
934,624	+				-1.4
934,640	+				-0.7
934,640	+				-0.0
934,664	+				-0.1
934,664	+				-2.8
934,671	+				-0.5
934,671	+				-1.3
934,679	-		GFF939	0.12	+0.3
934,679	-		GFF939	0.12	-1.3
934,679	-		GFF939	0.12	-0.3
934,691	+		GFF939	0.16	+0.9
934,691	+		GFF939	0.16	-0.3
934,691	+		GFF939	0.16	+0.7
934,691	+		GFF939	0.16	-0.6
934,691	+		GFF939	0.16	+0.7
934,699	-		GFF939	0.19	-0.6
934,699	-		GFF939	0.19	-0.5
934,699	-		GFF939	0.19	-1.7
934,713	+		GFF939	0.24	-0.4
934,718	+		GFF939	0.26	-1.3
934,718	-		GFF939	0.26	-1.7
934,723	+		GFF939	0.27	-0.4
934,724	+		GFF939	0.28	+0.8
934,726	-		GFF939	0.28	+1.3
934,731	-		GFF939	0.30	+0.4
934,734	+		GFF939	0.31	-0.5
934,743	-		GFF939	0.34	-0.2
934,743	-		GFF939	0.34	-2.4
934,749	+		GFF939	0.36	+0.3
934,773	+		GFF939	0.44	+0.5
934,781	-		GFF939	0.47	+0.3
934,786	-		GFF939	0.48	+2.0
934,791	+		GFF939	0.50	+0.5
934,808	+		GFF939	0.56	-1.4
934,808	+		GFF939	0.56	-1.1
934,808	+		GFF939	0.56	-2.9
934,812	+		GFF939	0.57	-1.3
934,816	-		GFF939	0.59	-0.5
934,816	-		GFF939	0.59	+1.6
934,820	-		GFF939	0.60	-0.6
934,826	+		GFF939	0.62	+0.3
934,830	+		GFF939	0.63	+0.1
934,830	+		GFF939	0.63	-0.5
934,830	+		GFF939	0.63	-1.3
934,830	+		GFF939	0.63	-0.1
934,834	-		GFF939	0.65	-1.6
934,836	-		GFF939	0.65	-0.3
934,838	-		GFF939	0.66	-1.7
934,838	-		GFF939	0.66	-1.4
934,838	-		GFF939	0.66	-0.4
934,838	-		GFF939	0.66	-0.1
934,838	-		GFF939	0.66	-1.8
934,838	-		GFF939	0.66	-0.2
934,838	-		GFF939	0.66	-0.6
934,847	-		GFF939	0.69	-0.3
934,849	+		GFF939	0.70	-3.8
934,850	-		GFF939	0.70	-1.7
934,858	-		GFF939	0.73	+0.6
934,869	-		GFF939	0.76	-1.6
934,880	+		GFF939	0.80	-0.9
934,882	+		GFF939	0.81	-0.8
934,883	-		GFF939	0.81	-1.9
934,888	-		GFF939	0.83	+0.4
934,905	+		GFF939	0.89	-0.0
934,919	+				-1.3
934,927	+				-0.8
934,927	+				+0.1
934,935	+				-0.5
934,940	+				+0.2
934,940	+				-0.1
934,945	+				+0.6
934,945	+				-1.5
934,945	+				-0.2
934,945	+				-0.1
934,945	+				-1.3
934,945	+				-0.4
934,945	+				-0.5
934,945	+				+0.1
934,948	-				+1.4
934,950	+				-1.2
934,950	+				-1.7
934,950	+				-0.6
934,950	+				-2.0
934,950	+				-0.4
934,950	+				-0.6
934,950	+				-0.9
934,953	-				-1.5
934,953	-				+0.1
934,953	-				-0.4
934,953	-				-0.3
934,958	-				+0.5
934,958	-				+0.0
934,958	-				-0.0
934,958	-				+0.9
934,958	-				+1.1
934,958	-				-2.6
934,958	-				+1.5
934,965	+				-0.7
934,965	+				-0.8
934,965	+				-0.9
934,965	+				-0.5
934,965	+				-0.2
934,965	+				-1.3
934,965	+				-0.2
934,965	+				-0.6
934,965	+				-0.1
934,965	+				-0.7
934,970	+				-0.2
934,970	+				-1.3
934,973	-				-0.5
934,973	-				-1.4
934,973	-				+0.1
934,973	-				-0.6
934,973	-				+0.3
934,975	+				-1.6
934,978	-				-0.6
934,978	-				-0.8
934,978	-				-0.0
934,978	-				+0.0
934,978	-				+0.8
934,978	-				-1.4
934,993	+				-0.6
934,999	+				+0.9
934,999	+				+1.1
934,999	+				+0.8
934,999	+				+0.1
934,999	+				+0.0
934,999	+				-0.3
935,001	-				+0.1
935,007	-				-2.0
935,007	-				-0.6
935,007	-				-1.5
935,007	-				+0.0
935,008	-				+0.6
935,015	-				-0.1
935,059	+				+0.6
935,075	+				-0.7
935,102	-				-0.7
935,140	+				-0.7
935,148	+				-0.5
935,148	+				-0.9
935,148	+				-0.5
935,148	+				-0.3
935,148	+				+0.3
935,148	+				+0.3
935,154	+				+0.2
935,156	-		GFF940	0.10	-0.9
935,156	-		GFF940	0.10	-0.4
935,180	-		GFF940	0.14	+1.5
935,185	+		GFF940	0.14	+0.2
935,186	+		GFF940	0.15	+1.2
935,194	-		GFF940	0.16	+0.1
935,205	-		GFF940	0.17	+0.1
935,217	-		GFF940	0.19	+1.0
935,223	+		GFF940	0.20	-1.7
935,253	-		GFF940	0.25	-0.3
935,253	-		GFF940	0.25	-1.6
935,271	-		GFF940	0.27	-1.3
935,281	+		GFF940	0.29	-0.9
935,281	+		GFF940	0.29	+0.2
935,289	+		GFF940	0.30	+0.7
935,297	-		GFF940	0.31	+1.0
935,297	-		GFF940	0.31	+1.3
935,297	-		GFF940	0.31	+0.5
935,297	-		GFF940	0.31	-1.5
935,308	+		GFF940	0.33	+1.3
935,329	+		GFF940	0.36	-1.1
935,354	-		GFF940	0.40	+0.9
935,371	+		GFF940	0.43	+0.3