Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF831 and GFF832 are separated by 11 nucleotides GFF832 and GFF833 are separated by 12 nucleotides GFF833 and GFF834 overlap by 1 nucleotides
GFF831 - hypothetical protein, at 819,271 to 819,612
GFF831
GFF832 - Vitamin B12 ABC transporter, substrate-binding protein BtuF, at 819,624 to 820,484
GFF832
GFF833 - hypothetical protein, at 820,497 to 820,895
GFF833
GFF834 - Protease II (EC 3.4.21.83), at 820,895 to 822,967
GFF834
Position (kb) 820
821 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 819.497 kb on + strand, within GFF831 at 819.505 kb on - strand, within GFF831 at 819.513 kb on - strand, within GFF831 at 819.575 kb on + strand, within GFF831 at 819.590 kb on + strand at 819.607 kb on + strand at 819.607 kb on + strand at 819.615 kb on - strand at 819.615 kb on - strand at 819.615 kb on - strand at 819.683 kb on + strand at 819.705 kb on - strand at 819.749 kb on - strand, within GFF832 at 819.760 kb on + strand, within GFF832 at 819.775 kb on - strand, within GFF832 at 819.790 kb on - strand, within GFF832 at 819.835 kb on - strand, within GFF832 at 819.879 kb on + strand, within GFF832 at 819.884 kb on - strand, within GFF832 at 819.922 kb on + strand, within GFF832 at 819.967 kb on + strand, within GFF832 at 819.974 kb on + strand, within GFF832 at 819.974 kb on + strand, within GFF832 at 819.974 kb on + strand, within GFF832 at 819.974 kb on + strand, within GFF832 at 819.981 kb on + strand, within GFF832 at 819.982 kb on - strand, within GFF832 at 819.982 kb on - strand, within GFF832 at 819.982 kb on - strand, within GFF832 at 819.982 kb on - strand, within GFF832 at 819.986 kb on + strand, within GFF832 at 819.989 kb on - strand, within GFF832 at 819.994 kb on - strand, within GFF832 at 819.994 kb on - strand, within GFF832 at 819.994 kb on - strand, within GFF832 at 820.004 kb on + strand, within GFF832 at 820.019 kb on + strand, within GFF832 at 820.019 kb on + strand, within GFF832 at 820.021 kb on + strand, within GFF832 at 820.029 kb on - strand, within GFF832 at 820.043 kb on + strand, within GFF832 at 820.043 kb on + strand, within GFF832 at 820.051 kb on - strand, within GFF832 at 820.051 kb on - strand, within GFF832 at 820.071 kb on - strand, within GFF832 at 820.107 kb on + strand, within GFF832 at 820.115 kb on - strand, within GFF832 at 820.115 kb on - strand, within GFF832 at 820.115 kb on - strand, within GFF832 at 820.122 kb on + strand, within GFF832 at 820.130 kb on - strand, within GFF832 at 820.130 kb on - strand, within GFF832 at 820.130 kb on - strand, within GFF832 at 820.130 kb on - strand, within GFF832 at 820.130 kb on - strand, within GFF832 at 820.130 kb on - strand, within GFF832 at 820.130 kb on - strand, within GFF832 at 820.130 kb on - strand, within GFF832 at 820.130 kb on - strand, within GFF832 at 820.135 kb on - strand, within GFF832 at 820.149 kb on - strand, within GFF832 at 820.150 kb on - strand, within GFF832 at 820.150 kb on - strand, within GFF832 at 820.150 kb on - strand, within GFF832 at 820.159 kb on + strand, within GFF832 at 820.224 kb on + strand, within GFF832 at 820.232 kb on - strand, within GFF832 at 820.248 kb on - strand, within GFF832 at 820.266 kb on + strand, within GFF832 at 820.271 kb on + strand, within GFF832 at 820.271 kb on + strand, within GFF832 at 820.271 kb on + strand, within GFF832 at 820.271 kb on + strand, within GFF832 at 820.271 kb on + strand, within GFF832 at 820.276 kb on + strand, within GFF832 at 820.276 kb on + strand, within GFF832 at 820.276 kb on + strand, within GFF832 at 820.276 kb on + strand, within GFF832 at 820.276 kb on + strand, within GFF832 at 820.276 kb on + strand, within GFF832 at 820.276 kb on + strand, within GFF832 at 820.279 kb on - strand, within GFF832 at 820.284 kb on - strand, within GFF832 at 820.284 kb on - strand, within GFF832 at 820.335 kb on - strand, within GFF832 at 820.339 kb on + strand, within GFF832 at 820.339 kb on + strand, within GFF832 at 820.354 kb on + strand, within GFF832 at 820.354 kb on - strand, within GFF832 at 820.359 kb on + strand, within GFF832 at 820.364 kb on + strand, within GFF832 at 820.372 kb on - strand, within GFF832 at 820.377 kb on - strand, within GFF832 at 820.377 kb on - strand, within GFF832 at 820.379 kb on + strand, within GFF832 at 820.392 kb on - strand, within GFF832 at 820.397 kb on - strand, within GFF832 at 820.399 kb on + strand at 820.403 kb on + strand at 820.403 kb on + strand at 820.409 kb on + strand at 820.409 kb on + strand at 820.409 kb on + strand at 820.409 kb on + strand at 820.409 kb on + strand at 820.409 kb on + strand at 820.409 kb on + strand at 820.409 kb on + strand at 820.409 kb on + strand at 820.409 kb on + strand at 820.409 kb on + strand at 820.409 kb on + strand at 820.409 kb on + strand at 820.409 kb on + strand at 820.409 kb on + strand at 820.409 kb on + strand at 820.409 kb on + strand at 820.409 kb on + strand at 820.409 kb on + strand at 820.409 kb on + strand at 820.409 kb on + strand at 820.409 kb on + strand at 820.409 kb on + strand at 820.409 kb on + strand at 820.409 kb on + strand at 820.409 kb on + strand at 820.411 kb on - strand at 820.412 kb on - strand at 820.417 kb on - strand at 820.417 kb on - strand at 820.417 kb on - strand at 820.417 kb on - strand at 820.417 kb on - strand at 820.417 kb on - strand at 820.417 kb on - strand at 820.417 kb on - strand at 820.417 kb on - strand at 820.417 kb on - strand at 820.417 kb on - strand at 820.417 kb on - strand at 820.417 kb on - strand at 820.417 kb on - strand at 820.417 kb on - strand at 820.417 kb on - strand at 820.417 kb on - strand at 820.417 kb on - strand at 820.417 kb on - strand at 820.417 kb on - strand at 820.436 kb on - strand at 820.437 kb on - strand at 820.460 kb on + strand at 820.460 kb on + strand at 820.460 kb on + strand at 820.468 kb on - strand at 820.468 kb on - strand at 820.468 kb on - strand at 820.490 kb on + strand at 820.498 kb on - strand at 820.500 kb on + strand at 820.502 kb on - strand at 820.503 kb on - strand at 820.590 kb on + strand, within GFF833 at 820.591 kb on + strand, within GFF833 at 820.604 kb on + strand, within GFF833 at 820.652 kb on + strand, within GFF833 at 820.661 kb on + strand, within GFF833 at 820.668 kb on + strand, within GFF833 at 820.747 kb on - strand, within GFF833 at 820.782 kb on + strand, within GFF833 at 820.794 kb on + strand, within GFF833 at 820.799 kb on + strand, within GFF833 at 820.802 kb on - strand, within GFF833 at 820.806 kb on + strand, within GFF833 at 820.808 kb on + strand, within GFF833 at 820.820 kb on - strand, within GFF833 at 820.827 kb on + strand, within GFF833 at 820.827 kb on + strand, within GFF833 at 820.830 kb on - strand, within GFF833 at 820.834 kb on + strand, within GFF833 at 820.835 kb on - strand, within GFF833 at 820.835 kb on - strand, within GFF833 at 820.835 kb on - strand, within GFF833 at 820.836 kb on + strand, within GFF833 at 820.843 kb on - strand, within GFF833 at 820.882 kb on - strand at 820.882 kb on - strand at 820.898 kb on + strand at 820.904 kb on - strand at 820.905 kb on + strand at 820.913 kb on - strand at 820.915 kb on + strand at 820.956 kb on + strand at 820.956 kb on + strand at 820.956 kb on + strand at 820.964 kb on - strand at 821.001 kb on + strand at 821.001 kb on + strand at 821.014 kb on + strand at 821.014 kb on + strand at 821.022 kb on - strand at 821.047 kb on + strand at 821.095 kb on + strand at 821.098 kb on - strand at 821.103 kb on - strand, within GFF834 at 821.111 kb on - strand, within GFF834 at 821.118 kb on + strand, within GFF834 at 821.126 kb on - strand, within GFF834 at 821.126 kb on - strand, within GFF834 at 821.135 kb on + strand, within GFF834 at 821.137 kb on + strand, within GFF834 at 821.141 kb on + strand, within GFF834 at 821.142 kb on + strand, within GFF834 at 821.142 kb on + strand, within GFF834 at 821.150 kb on - strand, within GFF834 at 821.156 kb on + strand, within GFF834 at 821.156 kb on + strand, within GFF834 at 821.158 kb on + strand, within GFF834 at 821.164 kb on - strand, within GFF834 at 821.233 kb on - strand, within GFF834 at 821.243 kb on - strand, within GFF834 at 821.243 kb on - strand, within GFF834 at 821.250 kb on + strand, within GFF834 at 821.250 kb on + strand, within GFF834 at 821.250 kb on + strand, within GFF834 at 821.250 kb on + strand, within GFF834 at 821.250 kb on + strand, within GFF834 at 821.250 kb on + strand, within GFF834 at 821.253 kb on - strand, within GFF834 at 821.258 kb on - strand, within GFF834 at 821.258 kb on - strand, within GFF834 at 821.287 kb on - strand, within GFF834 at 821.310 kb on + strand, within GFF834 at 821.310 kb on + strand, within GFF834 at 821.318 kb on - strand, within GFF834 at 821.318 kb on - strand, within GFF834 at 821.318 kb on - strand, within GFF834 at 821.363 kb on + strand, within GFF834 at 821.377 kb on - strand, within GFF834 at 821.430 kb on + strand, within GFF834 at 821.476 kb on - strand, within GFF834 at 821.497 kb on - strand, within GFF834 at 821.580 kb on - strand, within GFF834 at 821.642 kb on - strand, within GFF834 at 821.741 kb on + strand, within GFF834 at 821.811 kb on - strand, within GFF834 at 821.822 kb on - strand, within GFF834 at 821.839 kb on - strand, within GFF834 at 821.875 kb on - strand, within GFF834 at 821.882 kb on + strand, within GFF834
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate remove 819,497 + GFF831 0.66 -0.8 819,505 - GFF831 0.68 -0.1 819,513 - GFF831 0.71 -0.3 819,575 + GFF831 0.89 -0.1 819,590 + +0.4 819,607 + -0.2 819,607 + +1.4 819,615 - +1.6 819,615 - -1.4 819,615 - +0.1 819,683 + +0.6 819,705 - -1.6 819,749 - GFF832 0.15 -1.1 819,760 + GFF832 0.16 +0.8 819,775 - GFF832 0.18 +1.8 819,790 - GFF832 0.19 +1.0 819,835 - GFF832 0.25 +1.8 819,879 + GFF832 0.30 +0.7 819,884 - GFF832 0.30 +0.2 819,922 + GFF832 0.35 +0.7 819,967 + GFF832 0.40 -0.2 819,974 + GFF832 0.41 +1.0 819,974 + GFF832 0.41 +0.4 819,974 + GFF832 0.41 +0.1 819,974 + GFF832 0.41 -1.4 819,981 + GFF832 0.41 +0.3 819,982 - GFF832 0.42 -0.8 819,982 - GFF832 0.42 +2.3 819,982 - GFF832 0.42 -1.6 819,982 - GFF832 0.42 +0.7 819,986 + GFF832 0.42 +1.8 819,989 - GFF832 0.42 -0.2 819,994 - GFF832 0.43 -0.2 819,994 - GFF832 0.43 -0.6 819,994 - GFF832 0.43 +0.4 820,004 + GFF832 0.44 -1.4 820,019 + GFF832 0.46 +0.0 820,019 + GFF832 0.46 -0.9 820,021 + GFF832 0.46 -0.2 820,029 - GFF832 0.47 -0.8 820,043 + GFF832 0.49 +1.3 820,043 + GFF832 0.49 -0.9 820,051 - GFF832 0.50 +0.3 820,051 - GFF832 0.50 +0.5 820,071 - GFF832 0.52 -0.4 820,107 + GFF832 0.56 -0.3 820,115 - GFF832 0.57 +1.2 820,115 - GFF832 0.57 +1.0 820,115 - GFF832 0.57 +0.1 820,122 + GFF832 0.58 +0.1 820,130 - GFF832 0.59 -0.3 820,130 - GFF832 0.59 +0.5 820,130 - GFF832 0.59 +0.8 820,130 - GFF832 0.59 +1.0 820,130 - GFF832 0.59 +0.3 820,130 - GFF832 0.59 +0.5 820,130 - GFF832 0.59 -0.1 820,130 - GFF832 0.59 +0.3 820,130 - GFF832 0.59 +1.6 820,135 - GFF832 0.59 -1.0 820,149 - GFF832 0.61 +0.3 820,150 - GFF832 0.61 -1.6 820,150 - GFF832 0.61 -0.1 820,150 - GFF832 0.61 +0.7 820,159 + GFF832 0.62 +1.1 820,224 + GFF832 0.70 -1.1 820,232 - GFF832 0.71 -0.1 820,248 - GFF832 0.72 -0.3 820,266 + GFF832 0.75 -1.1 820,271 + GFF832 0.75 -0.0 820,271 + GFF832 0.75 +0.9 820,271 + GFF832 0.75 -0.1 820,271 + GFF832 0.75 +0.9 820,271 + GFF832 0.75 -0.2 820,276 + GFF832 0.76 +0.4 820,276 + GFF832 0.76 +1.1 820,276 + GFF832 0.76 -0.6 820,276 + GFF832 0.76 +1.1 820,276 + GFF832 0.76 -1.2 820,276 + GFF832 0.76 -1.1 820,276 + GFF832 0.76 -0.1 820,279 - GFF832 0.76 -0.0 820,284 - GFF832 0.77 -0.8 820,284 - GFF832 0.77 +0.8 820,335 - GFF832 0.83 +1.3 820,339 + GFF832 0.83 +0.1 820,339 + GFF832 0.83 +2.2 820,354 + GFF832 0.85 +0.1 820,354 - GFF832 0.85 +0.2 820,359 + GFF832 0.85 +0.2 820,364 + GFF832 0.86 -1.6 820,372 - GFF832 0.87 -1.5 820,377 - GFF832 0.87 +0.6 820,377 - GFF832 0.87 +3.2 820,379 + GFF832 0.88 +1.2 820,392 - GFF832 0.89 +0.6 820,397 - GFF832 0.90 -0.9 820,399 + -0.4 820,403 + -1.0 820,403 + +0.2 820,409 + -2.1 820,409 + +0.9 820,409 + -0.6 820,409 + +0.1 820,409 + -1.5 820,409 + +0.4 820,409 + -1.5 820,409 + -0.3 820,409 + +0.1 820,409 + -1.7 820,409 + -1.8 820,409 + +1.0 820,409 + -0.3 820,409 + +0.5 820,409 + -0.1 820,409 + -0.5 820,409 + +0.5 820,409 + +0.4 820,409 + +1.8 820,409 + -1.0 820,409 + -0.7 820,409 + -2.2 820,409 + -0.2 820,409 + +0.7 820,409 + +0.4 820,409 + +0.1 820,411 - +1.1 820,412 - -0.1 820,417 - +1.2 820,417 - -1.2 820,417 - -0.7 820,417 - -0.3 820,417 - -1.2 820,417 - -0.4 820,417 - +0.8 820,417 - -2.4 820,417 - -1.4 820,417 - +0.3 820,417 - -0.0 820,417 - +0.1 820,417 - -0.6 820,417 - +0.3 820,417 - +1.1 820,417 - +0.4 820,417 - -0.2 820,417 - -0.5 820,417 - +0.5 820,417 - -0.7 820,436 - +2.2 820,437 - -0.2 820,460 + -0.9 820,460 + +0.7 820,460 + +1.1 820,468 - +0.3 820,468 - +1.3 820,468 - -0.6 820,490 + +0.5 820,498 - -1.4 820,500 + +0.3 820,502 - +0.4 820,503 - +0.2 820,590 + GFF833 0.23 +0.4 820,591 + GFF833 0.24 +0.2 820,604 + GFF833 0.27 -1.4 820,652 + GFF833 0.39 +1.9 820,661 + GFF833 0.41 +0.9 820,668 + GFF833 0.43 -0.7 820,747 - GFF833 0.63 -1.9 820,782 + GFF833 0.71 -1.8 820,794 + GFF833 0.74 -2.0 820,799 + GFF833 0.76 -0.0 820,802 - GFF833 0.76 +0.1 820,806 + GFF833 0.77 -0.4 820,808 + GFF833 0.78 +1.4 820,820 - GFF833 0.81 +0.3 820,827 + GFF833 0.83 +0.7 820,827 + GFF833 0.83 +0.5 820,830 - GFF833 0.83 -0.4 820,834 + GFF833 0.84 +0.4 820,835 - GFF833 0.85 +0.2 820,835 - GFF833 0.85 -0.2 820,835 - GFF833 0.85 -1.2 820,836 + GFF833 0.85 +1.3 820,843 - GFF833 0.87 +1.6 820,882 - -0.2 820,882 - -0.9 820,898 + -0.2 820,904 - -0.5 820,905 + +1.3 820,913 - -0.6 820,915 + +0.8 820,956 + +0.1 820,956 + +1.6 820,956 + +0.3 820,964 - +0.9 821,001 + +0.9 821,001 + +1.3 821,014 + -0.1 821,014 + -1.4 821,022 - +1.3 821,047 + -0.1 821,095 + -0.0 821,098 - +0.1 821,103 - GFF834 0.10 -0.2 821,111 - GFF834 0.10 +1.4 821,118 + GFF834 0.11 +2.0 821,126 - GFF834 0.11 +0.0 821,126 - GFF834 0.11 -0.2 821,135 + GFF834 0.12 +0.2 821,137 + GFF834 0.12 +0.2 821,141 + GFF834 0.12 +0.2 821,142 + GFF834 0.12 +0.4 821,142 + GFF834 0.12 +0.4 821,150 - GFF834 0.12 +0.4 821,156 + GFF834 0.13 +0.3 821,156 + GFF834 0.13 +0.2 821,158 + GFF834 0.13 +0.9 821,164 - GFF834 0.13 +3.6 821,233 - GFF834 0.16 +0.1 821,243 - GFF834 0.17 +0.8 821,243 - GFF834 0.17 -1.0 821,250 + GFF834 0.17 -0.0 821,250 + GFF834 0.17 -2.2 821,250 + GFF834 0.17 -0.2 821,250 + GFF834 0.17 -1.5 821,250 + GFF834 0.17 -0.5 821,250 + GFF834 0.17 -1.9 821,253 - GFF834 0.17 +1.0 821,258 - GFF834 0.18 +0.1 821,258 - GFF834 0.18 -0.0 821,287 - GFF834 0.19 +2.4 821,310 + GFF834 0.20 -0.3 821,310 + GFF834 0.20 -0.2 821,318 - GFF834 0.20 +0.9 821,318 - GFF834 0.20 -0.1 821,318 - GFF834 0.20 +1.3 821,363 + GFF834 0.23 -0.5 821,377 - GFF834 0.23 +1.7 821,430 + GFF834 0.26 +0.8 821,476 - GFF834 0.28 +0.1 821,497 - GFF834 0.29 +0.3 821,580 - GFF834 0.33 +0.1 821,642 - GFF834 0.36 -0.1 821,741 + GFF834 0.41 +0.4 821,811 - GFF834 0.44 +1.0 821,822 - GFF834 0.45 +1.4 821,839 - GFF834 0.46 -0.5 821,875 - GFF834 0.47 -0.4 821,882 + GFF834 0.48 -0.3
Or see this region's nucleotide sequence