Strain Fitness in Sphingobium sp. HT1-2 around GFF817

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF816 and GFF817 are separated by 177 nucleotidesGFF817 and GFF818 are separated by 129 nucleotides GFF816 - ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17), at 804,514 to 805,644 GFF816 GFF817 - D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95), at 805,822 to 807,402 GFF817 GFF818 - Phosphoserine aminotransferase (EC 2.6.1.52), at 807,532 to 808,695 GFF818 Position (kb) 805 806 807 808Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 804.832 kb on + strand, within GFF816at 804.861 kb on + strand, within GFF816at 804.861 kb on + strand, within GFF816at 804.861 kb on + strand, within GFF816at 804.867 kb on + strand, within GFF816at 804.868 kb on + strand, within GFF816at 804.869 kb on - strand, within GFF816at 804.869 kb on - strand, within GFF816at 804.869 kb on - strand, within GFF816at 804.869 kb on - strand, within GFF816at 804.869 kb on - strand, within GFF816at 804.869 kb on - strand, within GFF816at 804.869 kb on - strand, within GFF816at 804.873 kb on + strand, within GFF816at 804.875 kb on - strand, within GFF816at 804.876 kb on - strand, within GFF816at 804.876 kb on - strand, within GFF816at 804.879 kb on + strand, within GFF816at 804.883 kb on - strand, within GFF816at 804.883 kb on - strand, within GFF816at 804.915 kb on - strand, within GFF816at 804.920 kb on - strand, within GFF816at 804.933 kb on - strand, within GFF816at 804.938 kb on - strand, within GFF816at 804.948 kb on - strand, within GFF816at 804.948 kb on - strand, within GFF816at 804.950 kb on + strand, within GFF816at 804.953 kb on - strand, within GFF816at 804.968 kb on - strand, within GFF816at 804.968 kb on - strand, within GFF816at 804.968 kb on - strand, within GFF816at 804.980 kb on + strand, within GFF816at 804.988 kb on - strand, within GFF816at 804.993 kb on - strand, within GFF816at 804.993 kb on - strand, within GFF816at 804.998 kb on + strand, within GFF816at 805.037 kb on + strand, within GFF816at 805.052 kb on + strand, within GFF816at 805.074 kb on - strand, within GFF816at 805.078 kb on + strand, within GFF816at 805.093 kb on - strand, within GFF816at 805.095 kb on + strand, within GFF816at 805.126 kb on - strand, within GFF816at 805.140 kb on + strand, within GFF816at 805.144 kb on + strand, within GFF816at 805.145 kb on + strand, within GFF816at 805.148 kb on - strand, within GFF816at 805.148 kb on - strand, within GFF816at 805.150 kb on + strand, within GFF816at 805.151 kb on + strand, within GFF816at 805.205 kb on + strand, within GFF816at 805.213 kb on - strand, within GFF816at 805.251 kb on + strand, within GFF816at 805.251 kb on + strand, within GFF816at 805.259 kb on - strand, within GFF816at 805.259 kb on - strand, within GFF816at 805.259 kb on - strand, within GFF816at 805.261 kb on + strand, within GFF816at 805.264 kb on - strand, within GFF816at 805.278 kb on - strand, within GFF816at 805.283 kb on + strand, within GFF816at 805.311 kb on + strand, within GFF816at 805.322 kb on + strand, within GFF816at 805.322 kb on + strand, within GFF816at 805.322 kb on + strand, within GFF816at 805.322 kb on + strand, within GFF816at 805.322 kb on + strand, within GFF816at 805.322 kb on + strand, within GFF816at 805.322 kb on + strand, within GFF816at 805.322 kb on + strand, within GFF816at 805.322 kb on + strand, within GFF816at 805.322 kb on + strand, within GFF816at 805.322 kb on + strand, within GFF816at 805.322 kb on + strand, within GFF816at 805.322 kb on + strand, within GFF816at 805.322 kb on + strand, within GFF816at 805.322 kb on + strand, within GFF816at 805.322 kb on + strand, within GFF816at 805.330 kb on - strand, within GFF816at 805.330 kb on - strand, within GFF816at 805.330 kb on - strand, within GFF816at 805.330 kb on - strand, within GFF816at 805.330 kb on - strand, within GFF816at 805.330 kb on - strand, within GFF816at 805.330 kb on - strand, within GFF816at 805.336 kb on - strand, within GFF816at 805.354 kb on + strand, within GFF816at 805.371 kb on - strand, within GFF816at 805.376 kb on + strand, within GFF816at 805.439 kb on + strand, within GFF816at 805.444 kb on + strand, within GFF816at 805.444 kb on + strand, within GFF816at 805.444 kb on + strand, within GFF816at 805.444 kb on + strand, within GFF816at 805.466 kb on + strand, within GFF816at 805.474 kb on - strand, within GFF816at 805.474 kb on - strand, within GFF816at 805.479 kb on + strand, within GFF816at 805.479 kb on + strand, within GFF816at 805.479 kb on + strand, within GFF816at 805.481 kb on + strand, within GFF816at 805.487 kb on - strand, within GFF816at 805.487 kb on - strand, within GFF816at 805.493 kb on - strand, within GFF816at 805.498 kb on - strand, within GFF816at 805.511 kb on + strand, within GFF816at 805.519 kb on - strand, within GFF816at 805.519 kb on - strand, within GFF816at 805.536 kb on - strandat 805.544 kb on + strandat 805.576 kb on + strandat 805.585 kb on - strandat 805.585 kb on - strandat 805.610 kb on - strandat 805.611 kb on - strandat 805.617 kb on + strandat 805.621 kb on - strandat 805.631 kb on - strandat 805.631 kb on - strandat 805.631 kb on - strandat 805.646 kb on + strandat 805.654 kb on - strandat 805.665 kb on + strandat 805.677 kb on + strandat 805.679 kb on - strandat 805.680 kb on - strandat 805.685 kb on - strandat 805.692 kb on - strandat 805.692 kb on - strandat 805.696 kb on - strandat 805.717 kb on - strandat 805.717 kb on - strandat 805.717 kb on - strandat 805.717 kb on - strandat 805.719 kb on + strandat 805.719 kb on + strandat 805.719 kb on + strandat 805.727 kb on - strandat 805.727 kb on - strandat 805.727 kb on - strandat 805.742 kb on + strandat 805.744 kb on + strandat 805.744 kb on + strandat 805.744 kb on + strandat 805.744 kb on + strandat 805.749 kb on + strandat 805.754 kb on + strandat 805.754 kb on + strandat 805.754 kb on + strandat 805.754 kb on + strandat 805.762 kb on - strandat 805.765 kb on - strandat 805.767 kb on + strandat 805.775 kb on - strandat 805.775 kb on - strandat 805.775 kb on - strandat 805.779 kb on + strandat 805.779 kb on + strandat 805.779 kb on + strandat 805.779 kb on + strandat 805.785 kb on + strandat 805.785 kb on + strandat 805.787 kb on - strandat 805.787 kb on - strandat 805.787 kb on - strandat 805.787 kb on - strandat 805.787 kb on - strandat 805.787 kb on - strandat 805.787 kb on - strandat 805.787 kb on - strandat 805.818 kb on - strandat 805.828 kb on - strandat 805.831 kb on + strandat 805.837 kb on - strandat 805.838 kb on + strandat 805.842 kb on - strandat 805.864 kb on + strandat 805.872 kb on - strandat 805.874 kb on + strandat 805.874 kb on + strandat 805.906 kb on - strandat 805.946 kb on - strandat 805.953 kb on + strandat 805.953 kb on + strandat 805.956 kb on - strandat 805.961 kb on - strandat 805.961 kb on - strandat 805.961 kb on - strandat 805.974 kb on + strandat 805.974 kb on + strandat 805.989 kb on + strand, within GFF817at 805.997 kb on - strand, within GFF817at 805.997 kb on - strand, within GFF817at 805.997 kb on - strand, within GFF817at 806.036 kb on + strand, within GFF817at 806.083 kb on + strand, within GFF817at 806.083 kb on - strand, within GFF817at 806.083 kb on - strand, within GFF817at 806.098 kb on + strand, within GFF817at 806.110 kb on + strand, within GFF817at 806.111 kb on - strand, within GFF817at 806.116 kb on - strand, within GFF817at 806.126 kb on - strand, within GFF817at 806.246 kb on + strand, within GFF817at 806.281 kb on + strand, within GFF817at 806.290 kb on + strand, within GFF817at 806.293 kb on - strand, within GFF817at 806.298 kb on - strand, within GFF817at 806.338 kb on + strand, within GFF817at 806.375 kb on - strand, within GFF817at 806.403 kb on + strand, within GFF817at 806.423 kb on - strand, within GFF817at 806.426 kb on + strand, within GFF817at 806.433 kb on + strand, within GFF817at 806.457 kb on + strand, within GFF817at 806.465 kb on - strand, within GFF817at 806.584 kb on - strand, within GFF817at 806.635 kb on - strand, within GFF817at 807.010 kb on - strand, within GFF817at 807.362 kb on + strandat 807.405 kb on + strandat 807.413 kb on - strandat 807.444 kb on + strandat 807.463 kb on + strandat 807.463 kb on + strandat 807.471 kb on - strandat 807.476 kb on + strandat 807.483 kb on + strandat 807.491 kb on - strandat 807.495 kb on + strandat 807.529 kb on + strandat 807.537 kb on - strandat 807.542 kb on + strandat 807.542 kb on + strandat 807.542 kb on + strandat 807.542 kb on + strandat 807.542 kb on + strandat 807.542 kb on + strandat 807.542 kb on + strandat 807.542 kb on + strandat 807.542 kb on + strandat 807.542 kb on + strandat 807.542 kb on + strandat 807.542 kb on + strandat 807.550 kb on - strandat 807.550 kb on - strandat 807.550 kb on - strandat 807.550 kb on - strandat 807.550 kb on - strandat 807.550 kb on - strandat 807.550 kb on - strandat 807.550 kb on - strandat 807.550 kb on - strandat 807.550 kb on - strandat 807.550 kb on - strandat 807.550 kb on - strandat 807.550 kb on - strandat 807.550 kb on - strandat 807.550 kb on - strandat 807.550 kb on - strandat 807.555 kb on - strandat 807.599 kb on + strandat 807.599 kb on + strandat 807.646 kb on + strandat 807.680 kb on + strand, within GFF818at 807.709 kb on - strand, within GFF818at 807.712 kb on + strand, within GFF818at 807.725 kb on + strand, within GFF818at 807.733 kb on - strand, within GFF818at 807.734 kb on + strand, within GFF818at 807.738 kb on + strand, within GFF818at 807.746 kb on - strand, within GFF818at 807.746 kb on - strand, within GFF818at 807.783 kb on + strand, within GFF818at 807.791 kb on - strand, within GFF818at 807.809 kb on + strand, within GFF818at 807.809 kb on + strand, within GFF818at 807.817 kb on - strand, within GFF818at 807.817 kb on - strand, within GFF818at 807.833 kb on + strand, within GFF818at 807.882 kb on + strand, within GFF818at 807.949 kb on - strand, within GFF818at 807.949 kb on - strand, within GFF818at 807.970 kb on - strand, within GFF818at 807.976 kb on - strand, within GFF818at 807.989 kb on + strand, within GFF818at 807.997 kb on - strand, within GFF818at 807.997 kb on - strand, within GFF818at 807.997 kb on - strand, within GFF818at 807.997 kb on - strand, within GFF818at 807.997 kb on - strand, within GFF818at 808.058 kb on - strand, within GFF818at 808.104 kb on - strand, within GFF818at 808.109 kb on + strand, within GFF818at 808.117 kb on - strand, within GFF818at 808.138 kb on + strand, within GFF818at 808.146 kb on - strand, within GFF818at 808.146 kb on - strand, within GFF818at 808.146 kb on - strand, within GFF818at 808.195 kb on - strand, within GFF818at 808.218 kb on + strand, within GFF818at 808.218 kb on + strand, within GFF818at 808.226 kb on - strand, within GFF818at 808.271 kb on - strand, within GFF818at 808.309 kb on - strand, within GFF818at 808.311 kb on + strand, within GFF818at 808.322 kb on + strand, within GFF818at 808.330 kb on - strand, within GFF818at 808.330 kb on - strand, within GFF818at 808.330 kb on - strand, within GFF818at 808.340 kb on - strand, within GFF818at 808.340 kb on - strand, within GFF818at 808.340 kb on - strand, within GFF818

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate
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804,832 + GFF816 0.28 -1.4
804,861 + GFF816 0.31 -2.8
804,861 + GFF816 0.31 -2.0
804,861 + GFF816 0.31 -3.2
804,867 + GFF816 0.31 -3.2
804,868 + GFF816 0.31 -2.4
804,869 - GFF816 0.31 -2.7
804,869 - GFF816 0.31 -2.1
804,869 - GFF816 0.31 -2.0
804,869 - GFF816 0.31 -3.2
804,869 - GFF816 0.31 -2.0
804,869 - GFF816 0.31 -2.0
804,869 - GFF816 0.31 -2.7
804,873 + GFF816 0.32 -1.8
804,875 - GFF816 0.32 -2.4
804,876 - GFF816 0.32 -1.6
804,876 - GFF816 0.32 -2.1
804,879 + GFF816 0.32 -1.4
804,883 - GFF816 0.33 -1.6
804,883 - GFF816 0.33 -2.0
804,915 - GFF816 0.35 -1.4
804,920 - GFF816 0.36 -1.7
804,933 - GFF816 0.37 -1.5
804,938 - GFF816 0.37 -2.8
804,948 - GFF816 0.38 -1.7
804,948 - GFF816 0.38 -2.8
804,950 + GFF816 0.39 -1.5
804,953 - GFF816 0.39 -1.3
804,968 - GFF816 0.40 -2.5
804,968 - GFF816 0.40 -1.4
804,968 - GFF816 0.40 -1.3
804,980 + GFF816 0.41 -3.5
804,988 - GFF816 0.42 -2.5
804,993 - GFF816 0.42 -1.9
804,993 - GFF816 0.42 -2.6
804,998 + GFF816 0.43 -2.9
805,037 + GFF816 0.46 -1.8
805,052 + GFF816 0.48 -3.2
805,074 - GFF816 0.50 -2.2
805,078 + GFF816 0.50 -1.6
805,093 - GFF816 0.51 -2.2
805,095 + GFF816 0.51 -1.5
805,126 - GFF816 0.54 -1.9
805,140 + GFF816 0.55 +0.3
805,144 + GFF816 0.56 -3.1
805,145 + GFF816 0.56 -4.1
805,148 - GFF816 0.56 -1.2
805,148 - GFF816 0.56 -3.1
805,150 + GFF816 0.56 -3.5
805,151 + GFF816 0.56 -3.1
805,205 + GFF816 0.61 -1.5
805,213 - GFF816 0.62 -1.2
805,251 + GFF816 0.65 -1.9
805,251 + GFF816 0.65 -1.5
805,259 - GFF816 0.66 -1.5
805,259 - GFF816 0.66 -1.4
805,259 - GFF816 0.66 -1.1
805,261 + GFF816 0.66 -1.4
805,264 - GFF816 0.66 -2.4
805,278 - GFF816 0.68 -1.9
805,283 + GFF816 0.68 -2.0
805,311 + GFF816 0.70 -1.2
805,322 + GFF816 0.71 -1.4
805,322 + GFF816 0.71 -1.2
805,322 + GFF816 0.71 -1.5
805,322 + GFF816 0.71 -1.4
805,322 + GFF816 0.71 -3.0
805,322 + GFF816 0.71 -2.1
805,322 + GFF816 0.71 -2.2
805,322 + GFF816 0.71 -3.8
805,322 + GFF816 0.71 -1.8
805,322 + GFF816 0.71 -2.0
805,322 + GFF816 0.71 -2.1
805,322 + GFF816 0.71 -2.0
805,322 + GFF816 0.71 -2.9
805,322 + GFF816 0.71 -3.0
805,322 + GFF816 0.71 -1.8
805,322 + GFF816 0.71 -2.0
805,330 - GFF816 0.72 -1.5
805,330 - GFF816 0.72 -2.3
805,330 - GFF816 0.72 -2.7
805,330 - GFF816 0.72 -3.0
805,330 - GFF816 0.72 -2.5
805,330 - GFF816 0.72 -2.7
805,330 - GFF816 0.72 -2.2
805,336 - GFF816 0.73 -2.8
805,354 + GFF816 0.74 -2.2
805,371 - GFF816 0.76 -3.7
805,376 + GFF816 0.76 -2.4
805,439 + GFF816 0.82 -2.8
805,444 + GFF816 0.82 +0.0
805,444 + GFF816 0.82 -1.5
805,444 + GFF816 0.82 -2.1
805,444 + GFF816 0.82 -3.0
805,466 + GFF816 0.84 -2.4
805,474 - GFF816 0.85 -1.8
805,474 - GFF816 0.85 -2.6
805,479 + GFF816 0.85 -2.0
805,479 + GFF816 0.85 -1.2
805,479 + GFF816 0.85 -0.5
805,481 + GFF816 0.85 -2.5
805,487 - GFF816 0.86 -2.0
805,487 - GFF816 0.86 -3.8
805,493 - GFF816 0.87 -2.0
805,498 - GFF816 0.87 -2.0
805,511 + GFF816 0.88 -1.8
805,519 - GFF816 0.89 -2.2
805,519 - GFF816 0.89 -2.2
805,536 - -0.4
805,544 + -2.4
805,576 + -2.9
805,585 - -2.6
805,585 - -0.5
805,610 - -2.4
805,611 - -1.5
805,617 + -2.6
805,621 - -2.1
805,631 - -2.9
805,631 - -4.0
805,631 - -2.4
805,646 + -2.2
805,654 - -1.0
805,665 + -2.4
805,677 + +1.3
805,679 - +0.2
805,680 - -1.0
805,685 - -0.4
805,692 - -0.3
805,692 - -0.2
805,696 - -1.3
805,717 - +1.4
805,717 - +0.2
805,717 - -1.9
805,717 - -1.2
805,719 + -0.4
805,719 + -1.2
805,719 + -0.9
805,727 - -1.2
805,727 - -1.1
805,727 - +0.6
805,742 + -0.4
805,744 + -0.9
805,744 + +0.9
805,744 + +0.2
805,744 + -1.9
805,749 + +1.2
805,754 + +1.3
805,754 + -2.0
805,754 + +1.0
805,754 + +0.3
805,762 - -0.8
805,765 - +0.7
805,767 + -2.0
805,775 - -0.4
805,775 - -1.5
805,775 - +0.3
805,779 + -1.3
805,779 + +0.5
805,779 + +0.6
805,779 + +0.2
805,785 + +0.1
805,785 + -0.3
805,787 - +0.8
805,787 - +0.4
805,787 - +0.7
805,787 - -0.3
805,787 - +0.8
805,787 - -1.2
805,787 - -0.8
805,787 - +0.9
805,818 - -0.3
805,828 - +1.0
805,831 + -3.1
805,837 - +1.3
805,838 + -1.2
805,842 - -1.6
805,864 + -0.7
805,872 - -2.1
805,874 + -1.2
805,874 + -1.6
805,906 - -1.5
805,946 - +0.4
805,953 + -1.5
805,953 + -1.2
805,956 - -1.2
805,961 - -0.9
805,961 - -0.5
805,961 - -0.2
805,974 + -2.7
805,974 + -0.8
805,989 + GFF817 0.11 -1.2
805,997 - GFF817 0.11 -0.6
805,997 - GFF817 0.11 +0.1
805,997 - GFF817 0.11 -0.3
806,036 + GFF817 0.14 -1.1
806,083 + GFF817 0.17 -1.6
806,083 - GFF817 0.17 +0.3
806,083 - GFF817 0.17 -0.3
806,098 + GFF817 0.17 -2.1
806,110 + GFF817 0.18 -0.4
806,111 - GFF817 0.18 -1.9
806,116 - GFF817 0.19 -0.7
806,126 - GFF817 0.19 -0.2
806,246 + GFF817 0.27 -1.5
806,281 + GFF817 0.29 +0.7
806,290 + GFF817 0.30 -1.8
806,293 - GFF817 0.30 -0.2
806,298 - GFF817 0.30 -0.4
806,338 + GFF817 0.33 +0.3
806,375 - GFF817 0.35 -2.0
806,403 + GFF817 0.37 -2.6
806,423 - GFF817 0.38 -1.2
806,426 + GFF817 0.38 -2.5
806,433 + GFF817 0.39 -0.1
806,457 + GFF817 0.40 -0.7
806,465 - GFF817 0.41 -1.6
806,584 - GFF817 0.48 -1.6
806,635 - GFF817 0.51 -1.5
807,010 - GFF817 0.75 -2.2
807,362 + -0.4
807,405 + +0.4
807,413 - +1.5
807,444 + +0.8
807,463 + -0.1
807,463 + -0.4
807,471 - +0.1
807,476 + -0.2
807,483 + +0.5
807,491 - -1.7
807,495 + +0.3
807,529 + +0.6
807,537 - -0.8
807,542 + -0.5
807,542 + -1.7
807,542 + -0.3
807,542 + -1.1
807,542 + +0.3
807,542 + -1.5
807,542 + +0.4
807,542 + -0.8
807,542 + +0.3
807,542 + +0.0
807,542 + -1.0
807,542 + +0.1
807,550 - +0.4
807,550 - -0.8
807,550 - -1.2
807,550 - -1.2
807,550 - +0.3
807,550 - -0.2
807,550 - -0.6
807,550 - -0.4
807,550 - +0.1
807,550 - -0.8
807,550 - -1.2
807,550 - +0.5
807,550 - +0.9
807,550 - -0.8
807,550 - -0.2
807,550 - -1.1
807,555 - -2.7
807,599 + -2.5
807,599 + -2.2
807,646 + -1.2
807,680 + GFF818 0.13 -1.7
807,709 - GFF818 0.15 -1.5
807,712 + GFF818 0.15 -2.7
807,725 + GFF818 0.17 -1.8
807,733 - GFF818 0.17 -1.4
807,734 + GFF818 0.17 -1.6
807,738 + GFF818 0.18 -2.5
807,746 - GFF818 0.18 -2.4
807,746 - GFF818 0.18 -2.9
807,783 + GFF818 0.22 -1.6
807,791 - GFF818 0.22 -2.2
807,809 + GFF818 0.24 -0.1
807,809 + GFF818 0.24 -4.1
807,817 - GFF818 0.24 -3.1
807,817 - GFF818 0.24 -1.8
807,833 + GFF818 0.26 -1.4
807,882 + GFF818 0.30 -2.0
807,949 - GFF818 0.36 +0.2
807,949 - GFF818 0.36 -2.2
807,970 - GFF818 0.38 -1.6
807,976 - GFF818 0.38 -1.4
807,989 + GFF818 0.39 -2.2
807,997 - GFF818 0.40 -1.7
807,997 - GFF818 0.40 -2.0
807,997 - GFF818 0.40 -2.4
807,997 - GFF818 0.40 -3.8
807,997 - GFF818 0.40 -2.8
808,058 - GFF818 0.45 -1.2
808,104 - GFF818 0.49 -1.6
808,109 + GFF818 0.50 -1.6
808,117 - GFF818 0.50 -2.4
808,138 + GFF818 0.52 -2.0
808,146 - GFF818 0.53 -1.5
808,146 - GFF818 0.53 -2.0
808,146 - GFF818 0.53 -2.9
808,195 - GFF818 0.57 -1.4
808,218 + GFF818 0.59 -1.6
808,218 + GFF818 0.59 -2.0
808,226 - GFF818 0.60 -1.6
808,271 - GFF818 0.63 -1.4
808,309 - GFF818 0.67 -1.6
808,311 + GFF818 0.67 -1.7
808,322 + GFF818 0.68 -1.2
808,330 - GFF818 0.69 -1.5
808,330 - GFF818 0.69 -1.8
808,330 - GFF818 0.69 -0.7
808,340 - GFF818 0.69 -1.6
808,340 - GFF818 0.69 -1.2
808,340 - GFF818 0.69 -0.5

Or see this region's nucleotide sequence