Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF808 and GFF809 are separated by 65 nucleotides GFF809 and GFF810 are separated by 137 nucleotides
GFF808 - Na+/H+-dicarboxylate symporters, at 796,551 to 797,882
GFF808
GFF809 - hypothetical protein, at 797,948 to 798,832
GFF809
GFF810 - Proton/glutamate symporter @ Sodium/glutamate symporter, at 798,970 to 800,298
GFF810
Position (kb) 797
798
799 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 797.750 kb on + strand at 797.761 kb on + strand at 797.836 kb on + strand at 797.836 kb on + strand at 797.836 kb on + strand at 797.836 kb on + strand at 797.849 kb on - strand at 797.876 kb on + strand at 797.876 kb on + strand at 797.876 kb on + strand at 797.876 kb on + strand at 797.877 kb on + strand at 797.877 kb on + strand at 797.877 kb on + strand at 797.883 kb on + strand at 797.883 kb on + strand at 797.884 kb on - strand at 797.884 kb on - strand at 797.884 kb on - strand at 797.884 kb on - strand at 797.884 kb on - strand at 797.884 kb on - strand at 797.884 kb on - strand at 797.885 kb on - strand at 797.885 kb on - strand at 797.885 kb on - strand at 797.891 kb on + strand at 797.891 kb on + strand at 797.899 kb on - strand at 797.899 kb on - strand at 797.899 kb on - strand at 797.915 kb on + strand at 797.946 kb on + strand at 797.946 kb on + strand at 797.951 kb on + strand at 797.956 kb on + strand at 797.956 kb on + strand at 797.959 kb on - strand at 797.959 kb on - strand at 797.959 kb on - strand at 797.964 kb on - strand at 797.965 kb on + strand at 797.966 kb on - strand at 797.981 kb on + strand at 797.981 kb on + strand at 798.042 kb on + strand, within GFF809 at 798.046 kb on + strand, within GFF809 at 798.061 kb on - strand, within GFF809 at 798.063 kb on - strand, within GFF809 at 798.080 kb on + strand, within GFF809 at 798.080 kb on + strand, within GFF809 at 798.080 kb on + strand, within GFF809 at 798.080 kb on + strand, within GFF809 at 798.088 kb on - strand, within GFF809 at 798.088 kb on - strand, within GFF809 at 798.088 kb on - strand, within GFF809 at 798.093 kb on - strand, within GFF809 at 798.093 kb on - strand, within GFF809 at 798.124 kb on - strand, within GFF809 at 798.127 kb on + strand, within GFF809 at 798.138 kb on - strand, within GFF809 at 798.145 kb on - strand, within GFF809 at 798.150 kb on + strand, within GFF809 at 798.162 kb on + strand, within GFF809 at 798.170 kb on - strand, within GFF809 at 798.215 kb on + strand, within GFF809 at 798.220 kb on + strand, within GFF809 at 798.244 kb on - strand, within GFF809 at 798.257 kb on - strand, within GFF809 at 798.259 kb on + strand, within GFF809 at 798.259 kb on + strand, within GFF809 at 798.264 kb on + strand, within GFF809 at 798.264 kb on + strand, within GFF809 at 798.272 kb on - strand, within GFF809 at 798.272 kb on - strand, within GFF809 at 798.314 kb on - strand, within GFF809 at 798.322 kb on - strand, within GFF809 at 798.322 kb on - strand, within GFF809 at 798.337 kb on - strand, within GFF809 at 798.337 kb on - strand, within GFF809 at 798.393 kb on + strand, within GFF809 at 798.404 kb on + strand, within GFF809 at 798.411 kb on + strand, within GFF809 at 798.417 kb on + strand, within GFF809 at 798.417 kb on + strand, within GFF809 at 798.419 kb on - strand, within GFF809 at 798.419 kb on - strand, within GFF809 at 798.419 kb on - strand, within GFF809 at 798.425 kb on - strand, within GFF809 at 798.427 kb on - strand, within GFF809 at 798.443 kb on + strand, within GFF809 at 798.448 kb on + strand, within GFF809 at 798.448 kb on - strand, within GFF809 at 798.451 kb on - strand, within GFF809 at 798.452 kb on - strand, within GFF809 at 798.477 kb on + strand, within GFF809 at 798.485 kb on - strand, within GFF809 at 798.514 kb on + strand, within GFF809 at 798.527 kb on - strand, within GFF809 at 798.541 kb on - strand, within GFF809 at 798.541 kb on - strand, within GFF809 at 798.570 kb on + strand, within GFF809 at 798.574 kb on + strand, within GFF809 at 798.574 kb on + strand, within GFF809 at 798.582 kb on - strand, within GFF809 at 798.591 kb on + strand, within GFF809 at 798.591 kb on + strand, within GFF809 at 798.596 kb on + strand, within GFF809 at 798.603 kb on + strand, within GFF809 at 798.622 kb on + strand, within GFF809 at 798.622 kb on + strand, within GFF809 at 798.622 kb on + strand, within GFF809 at 798.622 kb on + strand, within GFF809 at 798.622 kb on + strand, within GFF809 at 798.622 kb on + strand, within GFF809 at 798.622 kb on + strand, within GFF809 at 798.630 kb on - strand, within GFF809 at 798.630 kb on - strand, within GFF809 at 798.630 kb on - strand, within GFF809 at 798.630 kb on - strand, within GFF809 at 798.630 kb on - strand, within GFF809 at 798.630 kb on - strand, within GFF809 at 798.630 kb on - strand, within GFF809 at 798.630 kb on - strand, within GFF809 at 798.637 kb on + strand, within GFF809 at 798.637 kb on + strand, within GFF809 at 798.639 kb on - strand, within GFF809 at 798.642 kb on + strand, within GFF809 at 798.645 kb on - strand, within GFF809 at 798.660 kb on + strand, within GFF809 at 798.660 kb on + strand, within GFF809 at 798.660 kb on - strand, within GFF809 at 798.668 kb on - strand, within GFF809 at 798.668 kb on - strand, within GFF809 at 798.668 kb on - strand, within GFF809 at 798.681 kb on + strand, within GFF809 at 798.710 kb on - strand, within GFF809 at 798.711 kb on + strand, within GFF809 at 798.711 kb on + strand, within GFF809 at 798.727 kb on + strand, within GFF809 at 798.729 kb on - strand, within GFF809 at 798.738 kb on + strand, within GFF809 at 798.750 kb on - strand at 798.755 kb on - strand at 798.756 kb on + strand at 798.760 kb on - strand at 798.760 kb on - strand at 798.760 kb on - strand at 798.764 kb on - strand at 798.764 kb on - strand at 798.787 kb on + strand at 798.787 kb on + strand at 798.795 kb on - strand at 798.795 kb on - strand at 798.795 kb on - strand at 798.807 kb on + strand at 798.808 kb on + strand at 798.813 kb on + strand at 798.839 kb on - strand at 798.874 kb on + strand at 798.876 kb on + strand at 798.884 kb on - strand at 798.886 kb on + strand at 798.966 kb on + strand at 798.967 kb on + strand at 798.974 kb on - strand at 798.986 kb on + strand at 798.994 kb on - strand at 798.994 kb on - strand at 799.036 kb on - strand at 799.036 kb on - strand at 799.055 kb on + strand at 799.061 kb on + strand at 799.082 kb on - strand at 799.088 kb on + strand at 799.096 kb on - strand at 799.096 kb on - strand at 799.099 kb on + strand at 799.106 kb on - strand, within GFF810 at 799.111 kb on - strand, within GFF810 at 799.126 kb on - strand, within GFF810 at 799.141 kb on + strand, within GFF810 at 799.146 kb on + strand, within GFF810 at 799.147 kb on + strand, within GFF810 at 799.172 kb on - strand, within GFF810 at 799.172 kb on - strand, within GFF810 at 799.200 kb on + strand, within GFF810 at 799.239 kb on - strand, within GFF810 at 799.244 kb on + strand, within GFF810 at 799.244 kb on + strand, within GFF810 at 799.244 kb on + strand, within GFF810 at 799.244 kb on + strand, within GFF810 at 799.244 kb on + strand, within GFF810 at 799.252 kb on - strand, within GFF810 at 799.252 kb on - strand, within GFF810 at 799.252 kb on - strand, within GFF810 at 799.252 kb on - strand, within GFF810 at 799.252 kb on - strand, within GFF810 at 799.263 kb on + strand, within GFF810 at 799.271 kb on - strand, within GFF810 at 799.271 kb on - strand, within GFF810 at 799.302 kb on - strand, within GFF810 at 799.304 kb on + strand, within GFF810 at 799.305 kb on - strand, within GFF810 at 799.312 kb on - strand, within GFF810 at 799.312 kb on - strand, within GFF810 at 799.312 kb on - strand, within GFF810 at 799.314 kb on + strand, within GFF810 at 799.314 kb on + strand, within GFF810 at 799.322 kb on - strand, within GFF810 at 799.322 kb on - strand, within GFF810 at 799.354 kb on - strand, within GFF810 at 799.356 kb on + strand, within GFF810 at 799.358 kb on + strand, within GFF810 at 799.366 kb on + strand, within GFF810 at 799.366 kb on + strand, within GFF810 at 799.366 kb on + strand, within GFF810 at 799.366 kb on + strand, within GFF810 at 799.374 kb on - strand, within GFF810 at 799.374 kb on - strand, within GFF810 at 799.374 kb on - strand, within GFF810 at 799.374 kb on - strand, within GFF810 at 799.374 kb on - strand, within GFF810 at 799.374 kb on - strand, within GFF810 at 799.374 kb on - strand, within GFF810 at 799.374 kb on - strand, within GFF810 at 799.380 kb on + strand, within GFF810 at 799.381 kb on + strand, within GFF810 at 799.384 kb on - strand, within GFF810 at 799.389 kb on + strand, within GFF810 at 799.389 kb on + strand, within GFF810 at 799.407 kb on - strand, within GFF810 at 799.507 kb on + strand, within GFF810 at 799.507 kb on + strand, within GFF810 at 799.524 kb on - strand, within GFF810 at 799.526 kb on - strand, within GFF810 at 799.531 kb on + strand, within GFF810 at 799.532 kb on + strand, within GFF810 at 799.532 kb on + strand, within GFF810 at 799.540 kb on - strand, within GFF810 at 799.552 kb on + strand, within GFF810 at 799.578 kb on + strand, within GFF810 at 799.601 kb on + strand, within GFF810 at 799.611 kb on + strand, within GFF810 at 799.655 kb on - strand, within GFF810 at 799.665 kb on - strand, within GFF810 at 799.665 kb on - strand, within GFF810 at 799.667 kb on - strand, within GFF810 at 799.675 kb on - strand, within GFF810 at 799.675 kb on - strand, within GFF810 at 799.677 kb on + strand, within GFF810 at 799.685 kb on - strand, within GFF810 at 799.685 kb on - strand, within GFF810 at 799.716 kb on - strand, within GFF810 at 799.734 kb on - strand, within GFF810 at 799.741 kb on + strand, within GFF810 at 799.749 kb on - strand, within GFF810 at 799.765 kb on - strand, within GFF810 at 799.775 kb on - strand, within GFF810 at 799.775 kb on - strand, within GFF810 at 799.777 kb on - strand, within GFF810 at 799.783 kb on - strand, within GFF810 at 799.785 kb on - strand, within GFF810 at 799.813 kb on + strand, within GFF810 at 799.831 kb on + strand, within GFF810
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate remove 797,750 + -0.7 797,761 + -1.2 797,836 + -0.9 797,836 + -0.7 797,836 + +0.0 797,836 + +0.5 797,849 - -0.0 797,876 + +0.4 797,876 + -2.0 797,876 + -1.4 797,876 + -0.4 797,877 + -0.6 797,877 + +0.5 797,877 + +0.1 797,883 + +0.4 797,883 + +1.1 797,884 - -1.1 797,884 - +0.0 797,884 - -1.0 797,884 - -0.0 797,884 - +0.1 797,884 - -0.0 797,884 - +0.2 797,885 - -1.2 797,885 - +0.1 797,885 - -0.3 797,891 + -1.2 797,891 + +0.6 797,899 - -3.0 797,899 - +1.0 797,899 - +0.1 797,915 + +0.7 797,946 + -1.2 797,946 + +0.0 797,951 + -1.8 797,956 + -0.0 797,956 + -0.4 797,959 - -2.6 797,959 - -0.1 797,959 - -2.2 797,964 - -1.0 797,965 + -2.2 797,966 - +0.9 797,981 + -0.5 797,981 + +0.4 798,042 + GFF809 0.11 +0.2 798,046 + GFF809 0.11 -0.1 798,061 - GFF809 0.13 -1.0 798,063 - GFF809 0.13 -1.8 798,080 + GFF809 0.15 -0.8 798,080 + GFF809 0.15 -1.0 798,080 + GFF809 0.15 -1.2 798,080 + GFF809 0.15 -0.4 798,088 - GFF809 0.16 -2.1 798,088 - GFF809 0.16 -0.2 798,088 - GFF809 0.16 -1.5 798,093 - GFF809 0.16 -1.4 798,093 - GFF809 0.16 +0.3 798,124 - GFF809 0.20 -0.3 798,127 + GFF809 0.20 -0.3 798,138 - GFF809 0.21 -1.2 798,145 - GFF809 0.22 -1.2 798,150 + GFF809 0.23 -0.6 798,162 + GFF809 0.24 -0.5 798,170 - GFF809 0.25 +1.0 798,215 + GFF809 0.30 -0.7 798,220 + GFF809 0.31 +0.5 798,244 - GFF809 0.33 +0.0 798,257 - GFF809 0.35 -0.2 798,259 + GFF809 0.35 -0.7 798,259 + GFF809 0.35 +0.6 798,264 + GFF809 0.36 +0.5 798,264 + GFF809 0.36 -1.7 798,272 - GFF809 0.37 +1.2 798,272 - GFF809 0.37 -0.1 798,314 - GFF809 0.41 +0.1 798,322 - GFF809 0.42 -1.1 798,322 - GFF809 0.42 -1.0 798,337 - GFF809 0.44 -2.0 798,337 - GFF809 0.44 -0.1 798,393 + GFF809 0.50 -1.0 798,404 + GFF809 0.52 -0.5 798,411 + GFF809 0.52 -0.5 798,417 + GFF809 0.53 +0.2 798,417 + GFF809 0.53 +0.0 798,419 - GFF809 0.53 +0.1 798,419 - GFF809 0.53 -2.2 798,419 - GFF809 0.53 +0.1 798,425 - GFF809 0.54 -0.3 798,427 - GFF809 0.54 +0.0 798,443 + GFF809 0.56 +0.4 798,448 + GFF809 0.56 +0.1 798,448 - GFF809 0.56 +0.6 798,451 - GFF809 0.57 +1.2 798,452 - GFF809 0.57 +0.8 798,477 + GFF809 0.60 +0.2 798,485 - GFF809 0.61 -0.8 798,514 + GFF809 0.64 +0.2 798,527 - GFF809 0.65 -0.2 798,541 - GFF809 0.67 -0.4 798,541 - GFF809 0.67 -1.6 798,570 + GFF809 0.70 +0.2 798,574 + GFF809 0.71 -1.7 798,574 + GFF809 0.71 -1.7 798,582 - GFF809 0.72 +0.4 798,591 + GFF809 0.73 +0.2 798,591 + GFF809 0.73 -0.6 798,596 + GFF809 0.73 -1.3 798,603 + GFF809 0.74 -1.4 798,622 + GFF809 0.76 -0.5 798,622 + GFF809 0.76 +1.1 798,622 + GFF809 0.76 +0.1 798,622 + GFF809 0.76 -0.5 798,622 + GFF809 0.76 +1.0 798,622 + GFF809 0.76 -1.4 798,622 + GFF809 0.76 +0.6 798,630 - GFF809 0.77 +1.7 798,630 - GFF809 0.77 +0.9 798,630 - GFF809 0.77 -0.5 798,630 - GFF809 0.77 -1.0 798,630 - GFF809 0.77 -0.2 798,630 - GFF809 0.77 -1.2 798,630 - GFF809 0.77 -0.6 798,630 - GFF809 0.77 -0.4 798,637 + GFF809 0.78 -0.7 798,637 + GFF809 0.78 -0.1 798,639 - GFF809 0.78 -1.0 798,642 + GFF809 0.78 -1.0 798,645 - GFF809 0.79 -0.2 798,660 + GFF809 0.80 -1.0 798,660 + GFF809 0.80 -1.2 798,660 - GFF809 0.80 -0.4 798,668 - GFF809 0.81 +0.8 798,668 - GFF809 0.81 -0.0 798,668 - GFF809 0.81 -0.6 798,681 + GFF809 0.83 -0.0 798,710 - GFF809 0.86 +1.1 798,711 + GFF809 0.86 -0.6 798,711 + GFF809 0.86 -0.4 798,727 + GFF809 0.88 -1.0 798,729 - GFF809 0.88 -0.2 798,738 + GFF809 0.89 +0.4 798,750 - +0.4 798,755 - -0.9 798,756 + -0.2 798,760 - +0.5 798,760 - +1.2 798,760 - +0.8 798,764 - +0.2 798,764 - +0.1 798,787 + -1.2 798,787 + -0.7 798,795 - +0.2 798,795 - -2.7 798,795 - -0.8 798,807 + +0.4 798,808 + -0.9 798,813 + -1.2 798,839 - +0.4 798,874 + -2.5 798,876 + -1.4 798,884 - -2.1 798,886 + -0.2 798,966 + -0.4 798,967 + +0.6 798,974 - +0.2 798,986 + +0.3 798,994 - -1.6 798,994 - +0.4 799,036 - -0.0 799,036 - +0.2 799,055 + -1.2 799,061 + -0.0 799,082 - -1.5 799,088 + -0.4 799,096 - -0.0 799,096 - +0.9 799,099 + +1.0 799,106 - GFF810 0.10 -0.7 799,111 - GFF810 0.11 -1.7 799,126 - GFF810 0.12 -1.2 799,141 + GFF810 0.13 -1.5 799,146 + GFF810 0.13 -3.3 799,147 + GFF810 0.13 +0.0 799,172 - GFF810 0.15 -0.1 799,172 - GFF810 0.15 -0.7 799,200 + GFF810 0.17 +0.2 799,239 - GFF810 0.20 -1.6 799,244 + GFF810 0.21 -0.8 799,244 + GFF810 0.21 -1.4 799,244 + GFF810 0.21 -2.8 799,244 + GFF810 0.21 -1.0 799,244 + GFF810 0.21 -1.4 799,252 - GFF810 0.21 -0.8 799,252 - GFF810 0.21 -1.6 799,252 - GFF810 0.21 -0.9 799,252 - GFF810 0.21 +0.1 799,252 - GFF810 0.21 -0.3 799,263 + GFF810 0.22 -0.2 799,271 - GFF810 0.23 -1.5 799,271 - GFF810 0.23 +0.7 799,302 - GFF810 0.25 -1.7 799,304 + GFF810 0.25 -1.3 799,305 - GFF810 0.25 -1.4 799,312 - GFF810 0.26 -1.1 799,312 - GFF810 0.26 -1.8 799,312 - GFF810 0.26 -0.6 799,314 + GFF810 0.26 -1.8 799,314 + GFF810 0.26 -0.6 799,322 - GFF810 0.26 +0.2 799,322 - GFF810 0.26 -1.2 799,354 - GFF810 0.29 -0.8 799,356 + GFF810 0.29 -0.4 799,358 + GFF810 0.29 +0.7 799,366 + GFF810 0.30 +0.3 799,366 + GFF810 0.30 -1.4 799,366 + GFF810 0.30 +1.9 799,366 + GFF810 0.30 +0.8 799,374 - GFF810 0.30 +0.2 799,374 - GFF810 0.30 -0.1 799,374 - GFF810 0.30 -1.6 799,374 - GFF810 0.30 -0.0 799,374 - GFF810 0.30 -0.6 799,374 - GFF810 0.30 -0.2 799,374 - GFF810 0.30 +0.3 799,374 - GFF810 0.30 -0.8 799,380 + GFF810 0.31 -2.2 799,381 + GFF810 0.31 -0.1 799,384 - GFF810 0.31 +0.0 799,389 + GFF810 0.32 +0.3 799,389 + GFF810 0.32 -0.8 799,407 - GFF810 0.33 -0.9 799,507 + GFF810 0.40 -0.3 799,507 + GFF810 0.40 +0.1 799,524 - GFF810 0.42 +0.2 799,526 - GFF810 0.42 +1.3 799,531 + GFF810 0.42 +0.6 799,532 + GFF810 0.42 -1.5 799,532 + GFF810 0.42 -1.5 799,540 - GFF810 0.43 -1.6 799,552 + GFF810 0.44 -0.9 799,578 + GFF810 0.46 -1.9 799,601 + GFF810 0.47 -1.1 799,611 + GFF810 0.48 -0.4 799,655 - GFF810 0.52 +0.2 799,665 - GFF810 0.52 -0.1 799,665 - GFF810 0.52 +0.3 799,667 - GFF810 0.52 -0.3 799,675 - GFF810 0.53 +0.6 799,675 - GFF810 0.53 -0.2 799,677 + GFF810 0.53 +0.8 799,685 - GFF810 0.54 +0.4 799,685 - GFF810 0.54 -0.9 799,716 - GFF810 0.56 -0.1 799,734 - GFF810 0.57 +0.8 799,741 + GFF810 0.58 -2.3 799,749 - GFF810 0.59 -0.2 799,765 - GFF810 0.60 -0.2 799,775 - GFF810 0.61 -0.3 799,775 - GFF810 0.61 -0.4 799,777 - GFF810 0.61 -0.8 799,783 - GFF810 0.61 +1.1 799,785 - GFF810 0.61 +0.4 799,813 + GFF810 0.63 -1.5 799,831 + GFF810 0.65 +0.0
Or see this region's nucleotide sequence