Strain Fitness in Sphingobium sp. HT1-2 around GFF718

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF717 and GFF718 are separated by 83 nucleotidesGFF718 and GFF719 are separated by 52 nucleotidesGFF719 and GFF720 are separated by 326 nucleotides GFF717 - 23S rRNA (adenine(2503)-C(2))-methyltransferase @ tRNA (adenine(37)-C(2))-methyltransferase (EC 2.1.1.192), at 709,811 to 711,070 GFF717 GFF718 - hypothetical protein, at 711,154 to 711,576 GFF718 GFF719 - hypothetical protein, at 711,629 to 712,138 GFF719 GFF720 - outer membrane protein-like, at 712,465 to 713,025 GFF720 Position (kb) 711 712Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 710.155 kb on - strand, within GFF717at 710.155 kb on - strand, within GFF717at 710.168 kb on + strand, within GFF717at 710.181 kb on - strand, within GFF717at 710.223 kb on + strand, within GFF717at 710.241 kb on - strand, within GFF717at 710.258 kb on - strand, within GFF717at 710.266 kb on + strand, within GFF717at 710.278 kb on - strand, within GFF717at 710.292 kb on + strand, within GFF717at 710.292 kb on + strand, within GFF717at 710.293 kb on - strand, within GFF717at 710.300 kb on - strand, within GFF717at 710.310 kb on - strand, within GFF717at 710.320 kb on + strand, within GFF717at 710.320 kb on + strand, within GFF717at 710.320 kb on + strand, within GFF717at 710.328 kb on - strand, within GFF717at 710.339 kb on + strand, within GFF717at 710.367 kb on - strand, within GFF717at 710.367 kb on - strand, within GFF717at 710.383 kb on + strand, within GFF717at 710.393 kb on + strand, within GFF717at 710.393 kb on + strand, within GFF717at 710.417 kb on - strand, within GFF717at 710.431 kb on + strand, within GFF717at 710.439 kb on - strand, within GFF717at 710.467 kb on + strand, within GFF717at 710.467 kb on + strand, within GFF717at 710.467 kb on + strand, within GFF717at 710.467 kb on + strand, within GFF717at 710.467 kb on + strand, within GFF717at 710.475 kb on - strand, within GFF717at 710.519 kb on + strand, within GFF717at 710.519 kb on + strand, within GFF717at 710.520 kb on + strand, within GFF717at 710.522 kb on - strand, within GFF717at 710.527 kb on - strand, within GFF717at 710.552 kb on - strand, within GFF717at 710.567 kb on + strand, within GFF717at 710.586 kb on + strand, within GFF717at 710.588 kb on + strand, within GFF717at 710.600 kb on + strand, within GFF717at 710.600 kb on + strand, within GFF717at 710.608 kb on - strand, within GFF717at 710.608 kb on - strand, within GFF717at 710.608 kb on - strand, within GFF717at 710.634 kb on + strand, within GFF717at 710.642 kb on - strand, within GFF717at 710.679 kb on + strand, within GFF717at 710.687 kb on + strand, within GFF717at 710.693 kb on + strand, within GFF717at 710.693 kb on + strand, within GFF717at 710.693 kb on + strand, within GFF717at 710.693 kb on + strand, within GFF717at 710.693 kb on + strand, within GFF717at 710.698 kb on + strand, within GFF717at 710.698 kb on + strand, within GFF717at 710.700 kb on - strand, within GFF717at 710.700 kb on - strand, within GFF717at 710.700 kb on - strand, within GFF717at 710.701 kb on - strand, within GFF717at 710.703 kb on + strand, within GFF717at 710.711 kb on - strand, within GFF717at 710.719 kb on + strand, within GFF717at 710.721 kb on - strand, within GFF717at 710.764 kb on + strand, within GFF717at 710.790 kb on + strand, within GFF717at 710.798 kb on - strand, within GFF717at 710.798 kb on - strand, within GFF717at 710.798 kb on - strand, within GFF717at 710.803 kb on - strand, within GFF717at 710.835 kb on + strand, within GFF717at 710.836 kb on + strand, within GFF717at 710.841 kb on + strand, within GFF717at 710.849 kb on - strand, within GFF717at 710.849 kb on - strand, within GFF717at 710.849 kb on - strand, within GFF717at 710.849 kb on - strand, within GFF717at 710.849 kb on - strand, within GFF717at 710.851 kb on + strand, within GFF717at 710.851 kb on + strand, within GFF717at 710.856 kb on + strand, within GFF717at 710.864 kb on - strand, within GFF717at 710.867 kb on + strand, within GFF717at 710.881 kb on + strand, within GFF717at 710.894 kb on + strand, within GFF717at 710.897 kb on - strand, within GFF717at 710.902 kb on - strand, within GFF717at 710.902 kb on - strand, within GFF717at 710.955 kb on - strandat 710.964 kb on + strandat 710.982 kb on + strandat 710.982 kb on + strandat 710.990 kb on - strandat 710.990 kb on - strandat 710.990 kb on - strandat 710.990 kb on - strandat 710.992 kb on + strandat 710.992 kb on + strandat 711.000 kb on - strandat 711.021 kb on + strandat 711.049 kb on + strandat 711.059 kb on + strandat 711.059 kb on + strandat 711.064 kb on + strandat 711.064 kb on + strandat 711.064 kb on + strandat 711.064 kb on + strandat 711.072 kb on - strandat 711.079 kb on - strandat 711.092 kb on - strandat 711.111 kb on + strandat 711.116 kb on + strandat 711.119 kb on - strandat 711.119 kb on - strandat 711.183 kb on - strandat 711.185 kb on - strandat 711.188 kb on - strandat 711.202 kb on + strand, within GFF718at 711.202 kb on + strand, within GFF718at 711.207 kb on + strand, within GFF718at 711.207 kb on + strand, within GFF718at 711.207 kb on + strand, within GFF718at 711.210 kb on - strand, within GFF718at 711.215 kb on - strand, within GFF718at 711.215 kb on - strand, within GFF718at 711.224 kb on - strand, within GFF718at 711.227 kb on + strand, within GFF718at 711.250 kb on + strand, within GFF718at 711.254 kb on + strand, within GFF718at 711.254 kb on + strand, within GFF718at 711.254 kb on + strand, within GFF718at 711.262 kb on - strand, within GFF718at 711.262 kb on - strand, within GFF718at 711.269 kb on + strand, within GFF718at 711.277 kb on - strand, within GFF718at 711.335 kb on - strand, within GFF718at 711.356 kb on + strand, within GFF718at 711.359 kb on + strand, within GFF718at 711.361 kb on + strand, within GFF718at 711.361 kb on + strand, within GFF718at 711.364 kb on - strand, within GFF718at 711.364 kb on - strand, within GFF718at 711.366 kb on + strand, within GFF718at 711.368 kb on + strand, within GFF718at 711.368 kb on + strand, within GFF718at 711.371 kb on + strand, within GFF718at 711.381 kb on - strand, within GFF718at 711.390 kb on - strand, within GFF718at 711.394 kb on + strand, within GFF718at 711.400 kb on - strand, within GFF718at 711.402 kb on + strand, within GFF718at 711.402 kb on - strand, within GFF718at 711.402 kb on - strand, within GFF718at 711.442 kb on + strand, within GFF718at 711.469 kb on - strand, within GFF718at 711.471 kb on + strand, within GFF718at 711.480 kb on + strand, within GFF718at 711.480 kb on + strand, within GFF718at 711.480 kb on - strand, within GFF718at 711.481 kb on + strand, within GFF718at 711.488 kb on - strand, within GFF718at 711.511 kb on + strand, within GFF718at 711.511 kb on + strand, within GFF718at 711.537 kb on + strandat 711.540 kb on - strandat 711.545 kb on - strandat 711.545 kb on - strandat 711.545 kb on - strandat 711.595 kb on + strandat 711.601 kb on + strandat 711.607 kb on + strandat 711.722 kb on + strand, within GFF719at 711.740 kb on + strand, within GFF719at 711.758 kb on + strand, within GFF719at 711.892 kb on + strand, within GFF719at 712.005 kb on + strand, within GFF719at 712.010 kb on + strand, within GFF719at 712.028 kb on + strand, within GFF719at 712.028 kb on + strand, within GFF719at 712.053 kb on + strand, within GFF719at 712.193 kb on + strandat 712.282 kb on - strandat 712.310 kb on - strandat 712.401 kb on - strandat 712.401 kb on - strandat 712.423 kb on - strandat 712.429 kb on + strandat 712.429 kb on + strandat 712.453 kb on + strandat 712.476 kb on + strandat 712.509 kb on + strandat 712.562 kb on - strand, within GFF720

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate
remove
710,155 - GFF717 0.27 -2.9
710,155 - GFF717 0.27 -1.2
710,168 + GFF717 0.28 -0.1
710,181 - GFF717 0.29 -0.9
710,223 + GFF717 0.33 +1.2
710,241 - GFF717 0.34 -0.8
710,258 - GFF717 0.35 -0.3
710,266 + GFF717 0.36 +1.8
710,278 - GFF717 0.37 +1.3
710,292 + GFF717 0.38 -0.7
710,292 + GFF717 0.38 -0.5
710,293 - GFF717 0.38 -0.5
710,300 - GFF717 0.39 -2.2
710,310 - GFF717 0.40 +0.6
710,320 + GFF717 0.40 -0.7
710,320 + GFF717 0.40 +0.4
710,320 + GFF717 0.40 -0.2
710,328 - GFF717 0.41 +0.5
710,339 + GFF717 0.42 +0.7
710,367 - GFF717 0.44 -2.1
710,367 - GFF717 0.44 +0.2
710,383 + GFF717 0.45 -0.9
710,393 + GFF717 0.46 -0.4
710,393 + GFF717 0.46 +0.3
710,417 - GFF717 0.48 +1.0
710,431 + GFF717 0.49 +0.2
710,439 - GFF717 0.50 -2.3
710,467 + GFF717 0.52 -0.5
710,467 + GFF717 0.52 +1.2
710,467 + GFF717 0.52 -0.3
710,467 + GFF717 0.52 +1.6
710,467 + GFF717 0.52 -0.4
710,475 - GFF717 0.53 -1.0
710,519 + GFF717 0.56 +1.1
710,519 + GFF717 0.56 -1.3
710,520 + GFF717 0.56 +1.5
710,522 - GFF717 0.56 +1.4
710,527 - GFF717 0.57 -0.5
710,552 - GFF717 0.59 +0.6
710,567 + GFF717 0.60 -1.9
710,586 + GFF717 0.62 -0.3
710,588 + GFF717 0.62 +0.3
710,600 + GFF717 0.63 +0.1
710,600 + GFF717 0.63 -0.3
710,608 - GFF717 0.63 -1.0
710,608 - GFF717 0.63 +0.2
710,608 - GFF717 0.63 -0.8
710,634 + GFF717 0.65 -0.9
710,642 - GFF717 0.66 -1.2
710,679 + GFF717 0.69 -1.5
710,687 + GFF717 0.70 -0.2
710,693 + GFF717 0.70 +0.2
710,693 + GFF717 0.70 -0.3
710,693 + GFF717 0.70 -0.1
710,693 + GFF717 0.70 -0.0
710,693 + GFF717 0.70 +0.2
710,698 + GFF717 0.70 +1.2
710,698 + GFF717 0.70 -0.4
710,700 - GFF717 0.71 -1.0
710,700 - GFF717 0.71 -1.9
710,700 - GFF717 0.71 -0.0
710,701 - GFF717 0.71 -1.1
710,703 + GFF717 0.71 +0.6
710,711 - GFF717 0.71 -0.4
710,719 + GFF717 0.72 -2.2
710,721 - GFF717 0.72 -1.2
710,764 + GFF717 0.76 -0.9
710,790 + GFF717 0.78 +0.6
710,798 - GFF717 0.78 -0.4
710,798 - GFF717 0.78 -0.8
710,798 - GFF717 0.78 -0.9
710,803 - GFF717 0.79 -0.6
710,835 + GFF717 0.81 -0.1
710,836 + GFF717 0.81 -1.3
710,841 + GFF717 0.82 -1.7
710,849 - GFF717 0.82 -0.4
710,849 - GFF717 0.82 -0.2
710,849 - GFF717 0.82 +0.7
710,849 - GFF717 0.82 -0.9
710,849 - GFF717 0.82 +1.1
710,851 + GFF717 0.83 -0.0
710,851 + GFF717 0.83 -1.0
710,856 + GFF717 0.83 -0.6
710,864 - GFF717 0.84 -1.0
710,867 + GFF717 0.84 +1.7
710,881 + GFF717 0.85 +0.5
710,894 + GFF717 0.86 -1.8
710,897 - GFF717 0.86 -0.4
710,902 - GFF717 0.87 +0.7
710,902 - GFF717 0.87 +1.4
710,955 - -2.0
710,964 + -0.7
710,982 + +1.4
710,982 + -1.0
710,990 - +1.2
710,990 - -0.5
710,990 - +0.5
710,990 - -1.9
710,992 + -2.5
710,992 + -1.5
711,000 - +0.2
711,021 + +0.3
711,049 + -0.2
711,059 + -1.3
711,059 + -0.5
711,064 + +0.2
711,064 + -0.5
711,064 + -0.2
711,064 + -1.5
711,072 - -1.4
711,079 - +0.4
711,092 - -1.2
711,111 + -0.1
711,116 + -1.1
711,119 - -1.0
711,119 - +1.4
711,183 - +0.7
711,185 - +0.8
711,188 - -0.8
711,202 + GFF718 0.11 -1.1
711,202 + GFF718 0.11 -0.7
711,207 + GFF718 0.13 -0.5
711,207 + GFF718 0.13 -0.5
711,207 + GFF718 0.13 +1.1
711,210 - GFF718 0.13 -1.7
711,215 - GFF718 0.14 +0.8
711,215 - GFF718 0.14 +1.1
711,224 - GFF718 0.17 +0.7
711,227 + GFF718 0.17 -0.7
711,250 + GFF718 0.23 -0.4
711,254 + GFF718 0.24 -0.4
711,254 + GFF718 0.24 +0.2
711,254 + GFF718 0.24 -2.3
711,262 - GFF718 0.26 -0.9
711,262 - GFF718 0.26 +0.7
711,269 + GFF718 0.27 +1.0
711,277 - GFF718 0.29 +0.2
711,335 - GFF718 0.43 +0.3
711,356 + GFF718 0.48 -0.8
711,359 + GFF718 0.48 -1.6
711,361 + GFF718 0.49 -0.6
711,361 + GFF718 0.49 +0.2
711,364 - GFF718 0.50 +0.7
711,364 - GFF718 0.50 -0.7
711,366 + GFF718 0.50 +0.3
711,368 + GFF718 0.51 -1.4
711,368 + GFF718 0.51 -0.1
711,371 + GFF718 0.51 -0.2
711,381 - GFF718 0.54 +0.6
711,390 - GFF718 0.56 +0.3
711,394 + GFF718 0.57 -0.2
711,400 - GFF718 0.58 +0.6
711,402 + GFF718 0.59 +0.2
711,402 - GFF718 0.59 -1.3
711,402 - GFF718 0.59 +0.5
711,442 + GFF718 0.68 +0.3
711,469 - GFF718 0.74 -0.8
711,471 + GFF718 0.75 +0.3
711,480 + GFF718 0.77 -1.4
711,480 + GFF718 0.77 -1.8
711,480 - GFF718 0.77 +0.3
711,481 + GFF718 0.77 -1.5
711,488 - GFF718 0.79 -1.4
711,511 + GFF718 0.84 -1.3
711,511 + GFF718 0.84 +1.3
711,537 + +0.0
711,540 - -0.7
711,545 - -0.3
711,545 - -0.6
711,545 - -0.9
711,595 + -2.9
711,601 + -1.4
711,607 + +0.1
711,722 + GFF719 0.18 -1.3
711,740 + GFF719 0.22 +1.5
711,758 + GFF719 0.25 -2.1
711,892 + GFF719 0.52 +0.3
712,005 + GFF719 0.74 -1.4
712,010 + GFF719 0.75 -0.8
712,028 + GFF719 0.78 -0.8
712,028 + GFF719 0.78 -1.4
712,053 + GFF719 0.83 -1.3
712,193 + +0.2
712,282 - +0.3
712,310 - +0.1
712,401 - -0.0
712,401 - +1.5
712,423 - -1.2
712,429 + -1.7
712,429 + -0.9
712,453 + -0.1
712,476 + -0.8
712,509 + +0.2
712,562 - GFF720 0.17 +0.3

Or see this region's nucleotide sequence