Strain Fitness in Sphingobium sp. HT1-2 around GFF670

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF669 and GFF670 overlap by 4 nucleotidesGFF670 and GFF671 are separated by 33 nucleotidesGFF671 and GFF672 are separated by 150 nucleotidesGFF672 and GFF673 are separated by 3 nucleotides GFF669 - Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) periplasmic (secreted in GramPositives), at 665,008 to 666,054 GFF669 GFF670 - FIG138056: a glutathione-dependent thiol reductase, at 666,051 to 666,407 GFF670 GFF671 - RidA/YER057c/UK114 superfamily, group 6, at 666,441 to 666,821 GFF671 GFF672 - hypothetical protein, at 666,972 to 667,286 GFF672 GFF673 - Hemoglobin-like protein HbO, at 667,290 to 667,706 GFF673 Position (kb) 666 667Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 665.138 kb on + strand, within GFF669at 665.138 kb on + strand, within GFF669at 665.138 kb on + strand, within GFF669at 665.138 kb on + strand, within GFF669at 665.138 kb on + strand, within GFF669at 665.138 kb on + strand, within GFF669at 665.138 kb on + strand, within GFF669at 665.146 kb on - strand, within GFF669at 665.148 kb on - strand, within GFF669at 665.179 kb on + strand, within GFF669at 665.185 kb on + strand, within GFF669at 665.188 kb on - strand, within GFF669at 665.193 kb on - strand, within GFF669at 665.253 kb on - strand, within GFF669at 665.255 kb on - strand, within GFF669at 665.258 kb on - strand, within GFF669at 665.262 kb on - strand, within GFF669at 665.265 kb on - strand, within GFF669at 665.275 kb on - strand, within GFF669at 665.276 kb on - strand, within GFF669at 665.276 kb on - strand, within GFF669at 665.276 kb on - strand, within GFF669at 665.306 kb on - strand, within GFF669at 665.312 kb on - strand, within GFF669at 665.312 kb on - strand, within GFF669at 665.331 kb on + strand, within GFF669at 665.335 kb on + strand, within GFF669at 665.366 kb on + strand, within GFF669at 665.374 kb on - strand, within GFF669at 665.404 kb on + strand, within GFF669at 665.411 kb on + strand, within GFF669at 665.419 kb on - strand, within GFF669at 665.419 kb on - strand, within GFF669at 665.419 kb on - strand, within GFF669at 665.464 kb on + strand, within GFF669at 665.464 kb on + strand, within GFF669at 665.467 kb on - strand, within GFF669at 665.496 kb on + strand, within GFF669at 665.499 kb on - strand, within GFF669at 665.504 kb on - strand, within GFF669at 665.553 kb on + strand, within GFF669at 665.577 kb on + strand, within GFF669at 665.591 kb on + strand, within GFF669at 665.599 kb on - strand, within GFF669at 665.613 kb on + strand, within GFF669at 665.623 kb on + strand, within GFF669at 665.625 kb on + strand, within GFF669at 665.628 kb on - strand, within GFF669at 665.628 kb on - strand, within GFF669at 665.630 kb on + strand, within GFF669at 665.630 kb on + strand, within GFF669at 665.630 kb on + strand, within GFF669at 665.631 kb on + strand, within GFF669at 665.633 kb on - strand, within GFF669at 665.638 kb on - strand, within GFF669at 665.638 kb on - strand, within GFF669at 665.638 kb on - strand, within GFF669at 665.638 kb on - strand, within GFF669at 665.639 kb on - strand, within GFF669at 665.660 kb on - strand, within GFF669at 665.670 kb on - strand, within GFF669at 665.679 kb on - strand, within GFF669at 665.679 kb on - strand, within GFF669at 665.679 kb on - strand, within GFF669at 665.686 kb on + strand, within GFF669at 665.688 kb on + strand, within GFF669at 665.688 kb on + strand, within GFF669at 665.703 kb on + strand, within GFF669at 665.713 kb on + strand, within GFF669at 665.810 kb on - strand, within GFF669at 665.810 kb on - strand, within GFF669at 665.847 kb on + strand, within GFF669at 665.852 kb on + strand, within GFF669at 665.852 kb on + strand, within GFF669at 665.855 kb on - strand, within GFF669at 665.863 kb on + strand, within GFF669at 665.865 kb on - strand, within GFF669at 665.865 kb on - strand, within GFF669at 665.865 kb on - strand, within GFF669at 665.865 kb on - strand, within GFF669at 665.865 kb on - strand, within GFF669at 665.865 kb on - strand, within GFF669at 665.876 kb on - strand, within GFF669at 665.920 kb on - strand, within GFF669at 665.965 kb on + strandat 665.968 kb on - strandat 665.981 kb on - strandat 666.005 kb on - strandat 666.014 kb on - strandat 666.016 kb on - strandat 666.018 kb on + strandat 666.026 kb on - strandat 666.037 kb on - strandat 666.039 kb on + strandat 666.039 kb on + strandat 666.039 kb on + strandat 666.047 kb on - strandat 666.047 kb on - strandat 666.056 kb on + strandat 666.100 kb on - strand, within GFF670at 666.106 kb on + strand, within GFF670at 666.106 kb on + strand, within GFF670at 666.106 kb on + strand, within GFF670at 666.106 kb on + strand, within GFF670at 666.106 kb on + strand, within GFF670at 666.114 kb on - strand, within GFF670at 666.121 kb on + strand, within GFF670at 666.123 kb on + strand, within GFF670at 666.123 kb on + strand, within GFF670at 666.123 kb on + strand, within GFF670at 666.131 kb on - strand, within GFF670at 666.131 kb on - strand, within GFF670at 666.173 kb on - strand, within GFF670at 666.178 kb on - strand, within GFF670at 666.178 kb on - strand, within GFF670at 666.196 kb on + strand, within GFF670at 666.204 kb on - strand, within GFF670at 666.218 kb on + strand, within GFF670at 666.218 kb on + strand, within GFF670at 666.225 kb on - strand, within GFF670at 666.226 kb on - strand, within GFF670at 666.226 kb on - strand, within GFF670at 666.226 kb on - strand, within GFF670at 666.229 kb on + strand, within GFF670at 666.237 kb on - strand, within GFF670at 666.240 kb on + strand, within GFF670at 666.240 kb on + strand, within GFF670at 666.240 kb on + strand, within GFF670at 666.246 kb on - strand, within GFF670at 666.258 kb on + strand, within GFF670at 666.308 kb on + strand, within GFF670at 666.308 kb on + strand, within GFF670at 666.308 kb on + strand, within GFF670at 666.308 kb on + strand, within GFF670at 666.315 kb on - strand, within GFF670at 666.315 kb on - strand, within GFF670at 666.316 kb on - strand, within GFF670at 666.316 kb on - strand, within GFF670at 666.316 kb on - strand, within GFF670at 666.316 kb on - strand, within GFF670at 666.316 kb on - strand, within GFF670at 666.339 kb on - strand, within GFF670at 666.354 kb on + strand, within GFF670at 666.362 kb on - strand, within GFF670at 666.362 kb on - strand, within GFF670at 666.362 kb on - strand, within GFF670at 666.362 kb on - strand, within GFF670at 666.402 kb on + strandat 666.436 kb on + strandat 666.437 kb on + strandat 666.445 kb on - strandat 666.446 kb on - strandat 666.446 kb on - strandat 666.492 kb on - strand, within GFF671at 666.494 kb on + strand, within GFF671at 666.494 kb on + strand, within GFF671at 666.497 kb on - strand, within GFF671at 666.502 kb on - strand, within GFF671at 666.533 kb on - strand, within GFF671at 666.538 kb on - strand, within GFF671at 666.550 kb on + strand, within GFF671at 666.558 kb on - strand, within GFF671at 666.558 kb on - strand, within GFF671at 666.563 kb on - strand, within GFF671at 666.572 kb on + strand, within GFF671at 666.580 kb on - strand, within GFF671at 666.596 kb on - strand, within GFF671at 666.618 kb on + strand, within GFF671at 666.619 kb on - strand, within GFF671at 666.626 kb on - strand, within GFF671at 666.626 kb on - strand, within GFF671at 666.638 kb on - strand, within GFF671at 666.649 kb on + strand, within GFF671at 666.653 kb on + strand, within GFF671at 666.661 kb on - strand, within GFF671at 666.661 kb on - strand, within GFF671at 666.661 kb on - strand, within GFF671at 666.662 kb on + strand, within GFF671at 666.676 kb on - strand, within GFF671at 666.699 kb on - strand, within GFF671at 666.715 kb on + strand, within GFF671at 666.723 kb on - strand, within GFF671at 666.723 kb on - strand, within GFF671at 666.752 kb on + strand, within GFF671at 666.752 kb on + strand, within GFF671at 666.760 kb on - strand, within GFF671at 666.769 kb on + strand, within GFF671at 666.784 kb on - strandat 666.787 kb on - strandat 666.789 kb on + strandat 666.794 kb on + strandat 666.797 kb on - strandat 666.868 kb on - strandat 666.868 kb on - strandat 666.880 kb on + strandat 666.880 kb on + strandat 666.880 kb on + strandat 666.883 kb on - strandat 666.883 kb on - strandat 666.885 kb on + strandat 666.885 kb on + strandat 666.885 kb on + strandat 666.885 kb on + strandat 666.885 kb on + strandat 666.885 kb on + strandat 666.885 kb on + strandat 666.885 kb on + strandat 666.885 kb on + strandat 666.885 kb on + strandat 666.885 kb on + strandat 666.885 kb on + strandat 666.885 kb on + strandat 666.885 kb on + strandat 666.885 kb on + strandat 666.885 kb on + strandat 666.888 kb on - strandat 666.888 kb on - strandat 666.893 kb on - strandat 666.893 kb on - strandat 666.893 kb on - strandat 666.893 kb on - strandat 666.893 kb on - strandat 666.893 kb on - strandat 666.893 kb on - strandat 666.893 kb on - strandat 666.893 kb on - strandat 666.893 kb on - strandat 666.893 kb on - strandat 666.893 kb on - strandat 666.928 kb on + strandat 666.940 kb on - strandat 666.945 kb on + strandat 666.945 kb on + strandat 666.950 kb on - strandat 666.954 kb on + strandat 667.024 kb on - strand, within GFF672at 667.036 kb on - strand, within GFF672at 667.068 kb on + strand, within GFF672at 667.068 kb on + strand, within GFF672at 667.073 kb on + strand, within GFF672at 667.081 kb on - strand, within GFF672at 667.082 kb on - strand, within GFF672at 667.089 kb on - strand, within GFF672at 667.100 kb on - strand, within GFF672at 667.118 kb on + strand, within GFF672at 667.118 kb on + strand, within GFF672at 667.118 kb on + strand, within GFF672at 667.118 kb on + strand, within GFF672at 667.118 kb on + strand, within GFF672at 667.126 kb on - strand, within GFF672at 667.126 kb on - strand, within GFF672at 667.126 kb on - strand, within GFF672at 667.128 kb on + strand, within GFF672at 667.133 kb on + strand, within GFF672at 667.133 kb on + strand, within GFF672at 667.136 kb on - strand, within GFF672at 667.136 kb on - strand, within GFF672at 667.141 kb on - strand, within GFF672at 667.149 kb on + strand, within GFF672at 667.149 kb on + strand, within GFF672at 667.149 kb on + strand, within GFF672at 667.157 kb on - strand, within GFF672at 667.160 kb on + strand, within GFF672at 667.177 kb on + strand, within GFF672at 667.177 kb on + strand, within GFF672at 667.214 kb on - strand, within GFF672at 667.256 kb on + strandat 667.256 kb on - strandat 667.275 kb on + strandat 667.287 kb on + strandat 667.305 kb on - strandat 667.319 kb on + strandat 667.343 kb on + strand, within GFF673at 667.343 kb on + strand, within GFF673at 667.343 kb on + strand, within GFF673at 667.343 kb on + strand, within GFF673at 667.343 kb on + strand, within GFF673at 667.350 kb on + strand, within GFF673at 667.351 kb on - strand, within GFF673at 667.351 kb on - strand, within GFF673at 667.351 kb on - strand, within GFF673at 667.351 kb on - strand, within GFF673at 667.351 kb on - strand, within GFF673at 667.351 kb on - strand, within GFF673at 667.386 kb on + strand, within GFF673at 667.393 kb on + strand, within GFF673

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate
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665,138 + GFF669 0.12 -0.7
665,138 + GFF669 0.12 -0.7
665,138 + GFF669 0.12 +0.1
665,138 + GFF669 0.12 +0.3
665,138 + GFF669 0.12 -0.5
665,138 + GFF669 0.12 -0.5
665,138 + GFF669 0.12 -1.0
665,146 - GFF669 0.13 -1.2
665,148 - GFF669 0.13 +0.1
665,179 + GFF669 0.16 +0.5
665,185 + GFF669 0.17 +0.3
665,188 - GFF669 0.17 +0.1
665,193 - GFF669 0.18 -1.6
665,253 - GFF669 0.23 -0.1
665,255 - GFF669 0.24 +0.2
665,258 - GFF669 0.24 -0.2
665,262 - GFF669 0.24 -1.6
665,265 - GFF669 0.25 -1.9
665,275 - GFF669 0.26 +1.0
665,276 - GFF669 0.26 -0.2
665,276 - GFF669 0.26 -0.2
665,276 - GFF669 0.26 +1.0
665,306 - GFF669 0.28 +1.8
665,312 - GFF669 0.29 +0.1
665,312 - GFF669 0.29 -0.8
665,331 + GFF669 0.31 +0.5
665,335 + GFF669 0.31 +1.0
665,366 + GFF669 0.34 -0.9
665,374 - GFF669 0.35 -1.2
665,404 + GFF669 0.38 +0.6
665,411 + GFF669 0.38 -1.1
665,419 - GFF669 0.39 -1.8
665,419 - GFF669 0.39 +0.3
665,419 - GFF669 0.39 -0.4
665,464 + GFF669 0.44 -0.1
665,464 + GFF669 0.44 -0.7
665,467 - GFF669 0.44 +0.3
665,496 + GFF669 0.47 +1.5
665,499 - GFF669 0.47 -3.0
665,504 - GFF669 0.47 +0.7
665,553 + GFF669 0.52 -0.3
665,577 + GFF669 0.54 -0.6
665,591 + GFF669 0.56 +0.9
665,599 - GFF669 0.56 -1.5
665,613 + GFF669 0.58 -1.8
665,623 + GFF669 0.59 -1.6
665,625 + GFF669 0.59 +1.3
665,628 - GFF669 0.59 -0.4
665,628 - GFF669 0.59 -0.9
665,630 + GFF669 0.59 -2.8
665,630 + GFF669 0.59 -1.5
665,630 + GFF669 0.59 -0.8
665,631 + GFF669 0.60 -2.6
665,633 - GFF669 0.60 +0.7
665,638 - GFF669 0.60 -1.4
665,638 - GFF669 0.60 -0.4
665,638 - GFF669 0.60 +0.9
665,638 - GFF669 0.60 +0.1
665,639 - GFF669 0.60 -0.3
665,660 - GFF669 0.62 -0.9
665,670 - GFF669 0.63 +0.1
665,679 - GFF669 0.64 -0.3
665,679 - GFF669 0.64 +0.3
665,679 - GFF669 0.64 -1.3
665,686 + GFF669 0.65 +0.5
665,688 + GFF669 0.65 +1.1
665,688 + GFF669 0.65 -1.1
665,703 + GFF669 0.66 -0.7
665,713 + GFF669 0.67 -1.3
665,810 - GFF669 0.77 -1.5
665,810 - GFF669 0.77 +0.6
665,847 + GFF669 0.80 +0.3
665,852 + GFF669 0.81 -1.0
665,852 + GFF669 0.81 -0.4
665,855 - GFF669 0.81 -1.4
665,863 + GFF669 0.82 -2.5
665,865 - GFF669 0.82 +0.3
665,865 - GFF669 0.82 -0.8
665,865 - GFF669 0.82 -0.1
665,865 - GFF669 0.82 -1.0
665,865 - GFF669 0.82 -0.9
665,865 - GFF669 0.82 +0.0
665,876 - GFF669 0.83 -0.1
665,920 - GFF669 0.87 +0.6
665,965 + +0.2
665,968 - -1.0
665,981 - -1.2
666,005 - -0.2
666,014 - -1.6
666,016 - -1.8
666,018 + -1.0
666,026 - +0.8
666,037 - -0.2
666,039 + +0.6
666,039 + -0.7
666,039 + -0.3
666,047 - -0.5
666,047 - -0.3
666,056 + -0.3
666,100 - GFF670 0.14 -1.5
666,106 + GFF670 0.15 -1.8
666,106 + GFF670 0.15 +1.0
666,106 + GFF670 0.15 -0.7
666,106 + GFF670 0.15 -1.1
666,106 + GFF670 0.15 -1.7
666,114 - GFF670 0.18 -1.5
666,121 + GFF670 0.20 +0.2
666,123 + GFF670 0.20 +0.2
666,123 + GFF670 0.20 +0.1
666,123 + GFF670 0.20 -0.8
666,131 - GFF670 0.22 -0.8
666,131 - GFF670 0.22 -0.9
666,173 - GFF670 0.34 +0.2
666,178 - GFF670 0.36 +1.1
666,178 - GFF670 0.36 -0.1
666,196 + GFF670 0.41 -1.4
666,204 - GFF670 0.43 -1.2
666,218 + GFF670 0.47 -1.0
666,218 + GFF670 0.47 -0.1
666,225 - GFF670 0.49 -0.2
666,226 - GFF670 0.49 -0.6
666,226 - GFF670 0.49 -1.8
666,226 - GFF670 0.49 -1.3
666,229 + GFF670 0.50 +1.0
666,237 - GFF670 0.52 -0.3
666,240 + GFF670 0.53 -1.3
666,240 + GFF670 0.53 -0.6
666,240 + GFF670 0.53 +0.8
666,246 - GFF670 0.55 -1.5
666,258 + GFF670 0.58 -0.8
666,308 + GFF670 0.72 -1.2
666,308 + GFF670 0.72 -0.1
666,308 + GFF670 0.72 +0.2
666,308 + GFF670 0.72 -0.4
666,315 - GFF670 0.74 -0.4
666,315 - GFF670 0.74 +0.7
666,316 - GFF670 0.74 +0.2
666,316 - GFF670 0.74 -2.1
666,316 - GFF670 0.74 -1.5
666,316 - GFF670 0.74 -0.2
666,316 - GFF670 0.74 -2.1
666,339 - GFF670 0.81 -1.3
666,354 + GFF670 0.85 -0.5
666,362 - GFF670 0.87 -0.8
666,362 - GFF670 0.87 +1.0
666,362 - GFF670 0.87 -0.2
666,362 - GFF670 0.87 -1.5
666,402 + -1.3
666,436 + -0.4
666,437 + -0.1
666,445 - -0.3
666,446 - +1.0
666,446 - +0.6
666,492 - GFF671 0.13 -0.1
666,494 + GFF671 0.14 +0.3
666,494 + GFF671 0.14 +1.0
666,497 - GFF671 0.15 -0.2
666,502 - GFF671 0.16 -0.7
666,533 - GFF671 0.24 -2.0
666,538 - GFF671 0.25 -0.6
666,550 + GFF671 0.29 +0.2
666,558 - GFF671 0.31 -0.6
666,558 - GFF671 0.31 -1.8
666,563 - GFF671 0.32 -1.9
666,572 + GFF671 0.34 -0.6
666,580 - GFF671 0.36 -0.4
666,596 - GFF671 0.41 +0.3
666,618 + GFF671 0.46 -1.4
666,619 - GFF671 0.47 -1.2
666,626 - GFF671 0.49 +1.3
666,626 - GFF671 0.49 -0.3
666,638 - GFF671 0.52 -1.3
666,649 + GFF671 0.55 +0.8
666,653 + GFF671 0.56 +0.0
666,661 - GFF671 0.58 +0.8
666,661 - GFF671 0.58 -1.2
666,661 - GFF671 0.58 +0.3
666,662 + GFF671 0.58 +0.2
666,676 - GFF671 0.62 -1.4
666,699 - GFF671 0.68 +1.4
666,715 + GFF671 0.72 -1.0
666,723 - GFF671 0.74 +0.6
666,723 - GFF671 0.74 -0.4
666,752 + GFF671 0.82 +0.3
666,752 + GFF671 0.82 -0.1
666,760 - GFF671 0.84 +1.2
666,769 + GFF671 0.86 +1.5
666,784 - -0.5
666,787 - -1.1
666,789 + -0.4
666,794 + -1.6
666,797 - -1.1
666,868 - -0.0
666,868 - +0.3
666,880 + -0.6
666,880 + -1.0
666,880 + -0.8
666,883 - +0.7
666,883 - -1.9
666,885 + -0.4
666,885 + -2.3
666,885 + +0.2
666,885 + +0.5
666,885 + -0.7
666,885 + -0.9
666,885 + +0.1
666,885 + +0.0
666,885 + -1.4
666,885 + -0.2
666,885 + -1.5
666,885 + -2.7
666,885 + -1.3
666,885 + -0.3
666,885 + -1.0
666,885 + +0.4
666,888 - -0.1
666,888 - +1.0
666,893 - -2.0
666,893 - +0.2
666,893 - -1.0
666,893 - +0.1
666,893 - -1.6
666,893 - +0.0
666,893 - -1.6
666,893 - +1.2
666,893 - +0.2
666,893 - -1.3
666,893 - -0.2
666,893 - -0.4
666,928 + -0.7
666,940 - -2.6
666,945 + -0.4
666,945 + -3.1
666,950 - -0.6
666,954 + -0.9
667,024 - GFF672 0.17 +0.1
667,036 - GFF672 0.20 -0.3
667,068 + GFF672 0.30 +1.8
667,068 + GFF672 0.30 +0.5
667,073 + GFF672 0.32 -0.3
667,081 - GFF672 0.35 -0.3
667,082 - GFF672 0.35 -0.4
667,089 - GFF672 0.37 -0.7
667,100 - GFF672 0.41 +1.7
667,118 + GFF672 0.46 +1.5
667,118 + GFF672 0.46 +0.5
667,118 + GFF672 0.46 -0.0
667,118 + GFF672 0.46 -0.4
667,118 + GFF672 0.46 +0.7
667,126 - GFF672 0.49 -2.6
667,126 - GFF672 0.49 +0.2
667,126 - GFF672 0.49 +0.6
667,128 + GFF672 0.50 -0.3
667,133 + GFF672 0.51 +0.5
667,133 + GFF672 0.51 -0.0
667,136 - GFF672 0.52 +0.5
667,136 - GFF672 0.52 -2.1
667,141 - GFF672 0.54 -1.6
667,149 + GFF672 0.56 +0.2
667,149 + GFF672 0.56 +0.6
667,149 + GFF672 0.56 -0.5
667,157 - GFF672 0.59 -0.7
667,160 + GFF672 0.60 -0.7
667,177 + GFF672 0.65 +0.4
667,177 + GFF672 0.65 +0.9
667,214 - GFF672 0.77 +0.3
667,256 + -0.6
667,256 - -0.7
667,275 + +0.2
667,287 + -0.8
667,305 - +0.8
667,319 + -0.3
667,343 + GFF673 0.13 -1.0
667,343 + GFF673 0.13 -0.6
667,343 + GFF673 0.13 -1.4
667,343 + GFF673 0.13 -1.6
667,343 + GFF673 0.13 -0.4
667,350 + GFF673 0.14 +0.9
667,351 - GFF673 0.15 +0.4
667,351 - GFF673 0.15 +1.3
667,351 - GFF673 0.15 -0.1
667,351 - GFF673 0.15 -1.5
667,351 - GFF673 0.15 -1.6
667,351 - GFF673 0.15 -0.1
667,386 + GFF673 0.23 -0.9
667,393 + GFF673 0.25 -0.3

Or see this region's nucleotide sequence