Strain Fitness in Sphingobium sp. HT1-2 around GFF570

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF568 and GFF569 are separated by 37 nucleotidesGFF569 and GFF570 are separated by 3 nucleotidesGFF570 and GFF571 are separated by 81 nucleotides GFF568 - hypothetical protein, at 566,855 to 567,394 GFF568 GFF569 - hypothetical protein, at 567,432 to 567,986 GFF569 GFF570 - hypothetical protein, at 567,990 to 568,670 GFF570 GFF571 - hypothetical protein, at 568,752 to 569,807 GFF571 Position (kb) 567 568 569Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 566.999 kb on + strand, within GFF568at 567.007 kb on - strand, within GFF568at 567.007 kb on - strand, within GFF568at 567.007 kb on - strand, within GFF568at 567.007 kb on - strand, within GFF568at 567.032 kb on + strand, within GFF568at 567.058 kb on + strand, within GFF568at 567.064 kb on + strand, within GFF568at 567.073 kb on - strand, within GFF568at 567.073 kb on - strand, within GFF568at 567.140 kb on + strand, within GFF568at 567.140 kb on + strand, within GFF568at 567.213 kb on - strand, within GFF568at 567.213 kb on - strand, within GFF568at 567.222 kb on - strand, within GFF568at 567.289 kb on + strand, within GFF568at 567.301 kb on + strand, within GFF568at 567.325 kb on + strand, within GFF568at 567.367 kb on - strandat 567.367 kb on - strandat 567.414 kb on + strandat 567.414 kb on + strandat 567.414 kb on + strandat 567.414 kb on + strandat 567.422 kb on - strandat 567.445 kb on - strandat 567.452 kb on + strandat 567.452 kb on + strandat 567.452 kb on + strandat 567.452 kb on + strandat 567.452 kb on + strandat 567.457 kb on + strandat 567.457 kb on + strandat 567.457 kb on + strandat 567.457 kb on + strandat 567.457 kb on + strandat 567.460 kb on - strandat 567.465 kb on - strandat 567.465 kb on - strandat 567.475 kb on + strandat 567.483 kb on + strandat 567.483 kb on - strandat 567.490 kb on - strand, within GFF569at 567.579 kb on - strand, within GFF569at 567.600 kb on + strand, within GFF569at 567.602 kb on + strand, within GFF569at 567.608 kb on - strand, within GFF569at 567.610 kb on + strand, within GFF569at 567.620 kb on + strand, within GFF569at 567.628 kb on - strand, within GFF569at 567.628 kb on - strand, within GFF569at 567.668 kb on + strand, within GFF569at 567.668 kb on + strand, within GFF569at 567.668 kb on + strand, within GFF569at 567.668 kb on + strand, within GFF569at 567.668 kb on + strand, within GFF569at 567.668 kb on + strand, within GFF569at 567.668 kb on + strand, within GFF569at 567.668 kb on + strand, within GFF569at 567.668 kb on + strand, within GFF569at 567.668 kb on + strand, within GFF569at 567.668 kb on + strand, within GFF569at 567.668 kb on + strand, within GFF569at 567.668 kb on + strand, within GFF569at 567.668 kb on + strand, within GFF569at 567.668 kb on + strand, within GFF569at 567.668 kb on + strand, within GFF569at 567.668 kb on + strand, within GFF569at 567.668 kb on + strand, within GFF569at 567.668 kb on + strand, within GFF569at 567.668 kb on + strand, within GFF569at 567.668 kb on + strand, within GFF569at 567.668 kb on + strand, within GFF569at 567.668 kb on + strand, within GFF569at 567.676 kb on - strand, within GFF569at 567.676 kb on - strand, within GFF569at 567.676 kb on - strand, within GFF569at 567.676 kb on - strand, within GFF569at 567.676 kb on - strand, within GFF569at 567.676 kb on - strand, within GFF569at 567.676 kb on - strand, within GFF569at 567.676 kb on - strand, within GFF569at 567.676 kb on - strand, within GFF569at 567.676 kb on - strand, within GFF569at 567.676 kb on - strand, within GFF569at 567.676 kb on - strand, within GFF569at 567.676 kb on - strand, within GFF569at 567.676 kb on - strand, within GFF569at 567.676 kb on - strand, within GFF569at 567.676 kb on - strand, within GFF569at 567.676 kb on - strand, within GFF569at 567.676 kb on - strand, within GFF569at 567.676 kb on - strand, within GFF569at 567.676 kb on - strand, within GFF569at 567.676 kb on - strand, within GFF569at 567.676 kb on - strand, within GFF569at 567.676 kb on - strand, within GFF569at 567.676 kb on - strand, within GFF569at 567.709 kb on - strand, within GFF569at 567.735 kb on + strand, within GFF569at 567.783 kb on + strand, within GFF569at 567.783 kb on + strand, within GFF569at 567.802 kb on + strand, within GFF569at 567.810 kb on - strand, within GFF569at 567.821 kb on + strand, within GFF569at 567.855 kb on + strand, within GFF569at 567.858 kb on - strand, within GFF569at 567.863 kb on - strand, within GFF569at 567.892 kb on + strand, within GFF569at 567.900 kb on - strand, within GFF569at 567.959 kb on + strandat 567.988 kb on - strandat 568.014 kb on + strandat 568.039 kb on + strandat 568.039 kb on + strandat 568.040 kb on + strandat 568.106 kb on + strand, within GFF570at 568.132 kb on + strand, within GFF570at 568.183 kb on + strand, within GFF570at 568.183 kb on + strand, within GFF570at 568.193 kb on - strand, within GFF570at 568.193 kb on - strand, within GFF570at 568.234 kb on + strand, within GFF570at 568.234 kb on + strand, within GFF570at 568.239 kb on + strand, within GFF570at 568.241 kb on - strand, within GFF570at 568.242 kb on - strand, within GFF570at 568.244 kb on + strand, within GFF570at 568.244 kb on + strand, within GFF570at 568.244 kb on + strand, within GFF570at 568.244 kb on + strand, within GFF570at 568.244 kb on + strand, within GFF570at 568.244 kb on + strand, within GFF570at 568.244 kb on + strand, within GFF570at 568.244 kb on - strand, within GFF570at 568.252 kb on - strand, within GFF570at 568.252 kb on - strand, within GFF570at 568.252 kb on - strand, within GFF570at 568.252 kb on - strand, within GFF570at 568.256 kb on + strand, within GFF570at 568.263 kb on - strand, within GFF570at 568.263 kb on - strand, within GFF570at 568.303 kb on + strand, within GFF570at 568.304 kb on - strand, within GFF570at 568.310 kb on - strand, within GFF570at 568.320 kb on - strand, within GFF570at 568.344 kb on - strand, within GFF570at 568.364 kb on + strand, within GFF570at 568.364 kb on + strand, within GFF570at 568.421 kb on + strand, within GFF570at 568.421 kb on + strand, within GFF570at 568.421 kb on + strand, within GFF570at 568.421 kb on + strand, within GFF570at 568.421 kb on - strand, within GFF570at 568.429 kb on - strand, within GFF570at 568.429 kb on - strand, within GFF570at 568.444 kb on - strand, within GFF570at 568.465 kb on - strand, within GFF570at 568.478 kb on + strand, within GFF570at 568.478 kb on + strand, within GFF570at 568.478 kb on + strand, within GFF570at 568.513 kb on + strand, within GFF570at 568.513 kb on + strand, within GFF570at 568.521 kb on - strand, within GFF570at 568.521 kb on - strand, within GFF570at 568.572 kb on - strand, within GFF570at 568.573 kb on + strand, within GFF570at 568.595 kb on + strand, within GFF570at 568.608 kb on + strandat 568.665 kb on - strandat 568.665 kb on - strandat 568.665 kb on - strandat 568.673 kb on - strandat 568.700 kb on - strandat 568.700 kb on - strandat 568.702 kb on - strandat 568.702 kb on - strandat 568.717 kb on + strandat 568.729 kb on + strandat 568.729 kb on + strandat 568.737 kb on - strandat 568.780 kb on + strandat 568.782 kb on + strandat 568.782 kb on + strandat 568.892 kb on - strand, within GFF571at 569.222 kb on + strand, within GFF571at 569.659 kb on + strand, within GFF571

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate
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566,999 + GFF568 0.27 -0.2
567,007 - GFF568 0.28 +0.3
567,007 - GFF568 0.28 +0.6
567,007 - GFF568 0.28 +0.3
567,007 - GFF568 0.28 -1.2
567,032 + GFF568 0.33 -2.9
567,058 + GFF568 0.38 +1.4
567,064 + GFF568 0.39 -0.5
567,073 - GFF568 0.40 -0.8
567,073 - GFF568 0.40 +0.2
567,140 + GFF568 0.53 -0.5
567,140 + GFF568 0.53 +0.8
567,213 - GFF568 0.66 +0.3
567,213 - GFF568 0.66 -0.9
567,222 - GFF568 0.68 +0.5
567,289 + GFF568 0.80 +0.3
567,301 + GFF568 0.83 +0.7
567,325 + GFF568 0.87 +1.1
567,367 - +0.2
567,367 - -0.9
567,414 + +0.1
567,414 + +0.3
567,414 + +1.1
567,414 + -1.2
567,422 - -0.1
567,445 - +1.1
567,452 + -0.8
567,452 + +1.2
567,452 + +0.5
567,452 + -0.1
567,452 + +0.3
567,457 + +0.4
567,457 + -1.0
567,457 + +0.3
567,457 + -1.1
567,457 + -0.5
567,460 - +0.3
567,465 - -0.2
567,465 - -0.2
567,475 + +1.2
567,483 + -0.3
567,483 - +0.7
567,490 - GFF569 0.10 -0.0
567,579 - GFF569 0.26 +1.8
567,600 + GFF569 0.30 +0.1
567,602 + GFF569 0.31 +1.6
567,608 - GFF569 0.32 +0.3
567,610 + GFF569 0.32 -0.3
567,620 + GFF569 0.34 +0.8
567,628 - GFF569 0.35 +1.1
567,628 - GFF569 0.35 +0.2
567,668 + GFF569 0.43 -0.2
567,668 + GFF569 0.43 +1.4
567,668 + GFF569 0.43 -0.1
567,668 + GFF569 0.43 -1.0
567,668 + GFF569 0.43 +0.6
567,668 + GFF569 0.43 -0.4
567,668 + GFF569 0.43 +0.8
567,668 + GFF569 0.43 -2.6
567,668 + GFF569 0.43 -0.3
567,668 + GFF569 0.43 -1.6
567,668 + GFF569 0.43 +0.8
567,668 + GFF569 0.43 +0.3
567,668 + GFF569 0.43 +2.0
567,668 + GFF569 0.43 -1.0
567,668 + GFF569 0.43 -0.2
567,668 + GFF569 0.43 -0.4
567,668 + GFF569 0.43 +0.3
567,668 + GFF569 0.43 +0.5
567,668 + GFF569 0.43 +0.8
567,668 + GFF569 0.43 +0.3
567,668 + GFF569 0.43 -0.4
567,668 + GFF569 0.43 +0.0
567,668 + GFF569 0.43 -0.5
567,676 - GFF569 0.44 -0.2
567,676 - GFF569 0.44 +0.4
567,676 - GFF569 0.44 +0.1
567,676 - GFF569 0.44 +1.3
567,676 - GFF569 0.44 -0.8
567,676 - GFF569 0.44 +0.2
567,676 - GFF569 0.44 -0.2
567,676 - GFF569 0.44 +0.9
567,676 - GFF569 0.44 -2.0
567,676 - GFF569 0.44 +0.9
567,676 - GFF569 0.44 +1.1
567,676 - GFF569 0.44 +0.2
567,676 - GFF569 0.44 -0.3
567,676 - GFF569 0.44 +0.1
567,676 - GFF569 0.44 -1.8
567,676 - GFF569 0.44 +1.3
567,676 - GFF569 0.44 +0.2
567,676 - GFF569 0.44 +0.2
567,676 - GFF569 0.44 +0.6
567,676 - GFF569 0.44 +0.3
567,676 - GFF569 0.44 -0.0
567,676 - GFF569 0.44 +0.3
567,676 - GFF569 0.44 -0.1
567,676 - GFF569 0.44 -0.2
567,709 - GFF569 0.50 -0.9
567,735 + GFF569 0.55 +0.1
567,783 + GFF569 0.63 +1.0
567,783 + GFF569 0.63 -0.6
567,802 + GFF569 0.67 -0.0
567,810 - GFF569 0.68 +0.4
567,821 + GFF569 0.70 -0.0
567,855 + GFF569 0.76 +1.6
567,858 - GFF569 0.77 -0.2
567,863 - GFF569 0.78 +0.0
567,892 + GFF569 0.83 -0.1
567,900 - GFF569 0.84 +0.9
567,959 + -1.4
567,988 - -1.2
568,014 + -0.0
568,039 + +1.4
568,039 + -1.0
568,040 + -0.5
568,106 + GFF570 0.17 +0.0
568,132 + GFF570 0.21 +0.7
568,183 + GFF570 0.28 +0.2
568,183 + GFF570 0.28 +1.0
568,193 - GFF570 0.30 +0.6
568,193 - GFF570 0.30 -0.5
568,234 + GFF570 0.36 +0.3
568,234 + GFF570 0.36 +0.1
568,239 + GFF570 0.37 +0.3
568,241 - GFF570 0.37 +0.1
568,242 - GFF570 0.37 -1.2
568,244 + GFF570 0.37 -0.4
568,244 + GFF570 0.37 +0.9
568,244 + GFF570 0.37 -0.0
568,244 + GFF570 0.37 -0.5
568,244 + GFF570 0.37 -1.4
568,244 + GFF570 0.37 +0.2
568,244 + GFF570 0.37 +0.8
568,244 - GFF570 0.37 +0.8
568,252 - GFF570 0.38 +0.5
568,252 - GFF570 0.38 +1.1
568,252 - GFF570 0.38 -1.3
568,252 - GFF570 0.38 +0.0
568,256 + GFF570 0.39 -0.1
568,263 - GFF570 0.40 -1.7
568,263 - GFF570 0.40 -0.6
568,303 + GFF570 0.46 -0.8
568,304 - GFF570 0.46 +2.0
568,310 - GFF570 0.47 +0.0
568,320 - GFF570 0.48 -0.7
568,344 - GFF570 0.52 +0.3
568,364 + GFF570 0.55 +0.9
568,364 + GFF570 0.55 +0.5
568,421 + GFF570 0.63 +0.3
568,421 + GFF570 0.63 +0.5
568,421 + GFF570 0.63 -0.5
568,421 + GFF570 0.63 +0.8
568,421 - GFF570 0.63 +0.1
568,429 - GFF570 0.64 +0.6
568,429 - GFF570 0.64 +0.4
568,444 - GFF570 0.67 +1.0
568,465 - GFF570 0.70 +1.1
568,478 + GFF570 0.72 +0.0
568,478 + GFF570 0.72 +0.6
568,478 + GFF570 0.72 +0.8
568,513 + GFF570 0.77 -0.3
568,513 + GFF570 0.77 -1.4
568,521 - GFF570 0.78 -0.2
568,521 - GFF570 0.78 +0.8
568,572 - GFF570 0.85 +0.1
568,573 + GFF570 0.86 +0.3
568,595 + GFF570 0.89 -0.1
568,608 + -0.4
568,665 - -0.7
568,665 - -1.0
568,665 - +1.1
568,673 - +0.6
568,700 - +1.5
568,700 - -0.3
568,702 - -0.2
568,702 - -1.0
568,717 + -0.6
568,729 + +0.1
568,729 + -0.3
568,737 - -0.1
568,780 + +0.5
568,782 + -2.0
568,782 + -0.4
568,892 - GFF571 0.13 +0.7
569,222 + GFF571 0.45 -0.2
569,659 + GFF571 0.86 -1.6

Or see this region's nucleotide sequence