Strain Fitness in Sphingobium sp. HT1-2 around GFF5295

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
5,284,049	-		GFF5293	0.76	-1.9
5,284,058	+		GFF5293	0.77	-1.4
5,284,058	+		GFF5293	0.77	-1.1
5,284,058	+		GFF5293	0.77	-2.2
5,284,064	+		GFF5293	0.77	-2.0
5,284,064	+		GFF5293	0.77	-0.4
5,284,066	-		GFF5293	0.77	-0.2
5,284,070	+		GFF5293	0.77	+0.0
5,284,070	+		GFF5293	0.77	-0.2
5,284,078	-		GFF5293	0.77	-1.7
5,284,078	-		GFF5293	0.77	+1.1
5,284,079	+		GFF5293	0.77	+0.4
5,284,079	+		GFF5293	0.77	+0.6
5,284,079	+		GFF5293	0.77	-0.0
5,284,079	+		GFF5293	0.77	-0.3
5,284,079	+		GFF5293	0.77	-1.6
5,284,080	-		GFF5293	0.77	-1.6
5,284,087	-		GFF5293	0.78	-1.2
5,284,087	-		GFF5293	0.78	-0.8
5,284,087	-		GFF5293	0.78	+0.9
5,284,101	+		GFF5293	0.78	-0.4
5,284,114	-		GFF5293	0.78	-1.5
5,284,122	+		GFF5293	0.79	+0.8
5,284,122	+		GFF5293	0.79	-0.0
5,284,122	+		GFF5293	0.79	+0.3
5,284,122	+		GFF5293	0.79	-0.4
5,284,122	+		GFF5293	0.79	-1.9
5,284,122	+		GFF5293	0.79	-1.7
5,284,122	+		GFF5293	0.79	-1.0
5,284,122	+		GFF5293	0.79	-0.7
5,284,122	+		GFF5293	0.79	-0.0
5,284,122	+		GFF5293	0.79	+0.6
5,284,122	+		GFF5293	0.79	-0.1
5,284,122	+		GFF5293	0.79	+1.0
5,284,122	+		GFF5293	0.79	-0.2
5,284,122	+		GFF5293	0.79	+1.3
5,284,122	+		GFF5293	0.79	+0.7
5,284,122	+		GFF5293	0.79	+0.4
5,284,122	+		GFF5293	0.79	+0.6
5,284,122	+		GFF5293	0.79	+0.1
5,284,122	+		GFF5293	0.79	-0.5
5,284,122	+		GFF5293	0.79	-2.4
5,284,125	-		GFF5293	0.79	-0.2
5,284,130	-		GFF5293	0.79	+0.1
5,284,130	-		GFF5293	0.79	-0.0
5,284,130	-		GFF5293	0.79	-1.6
5,284,130	-		GFF5293	0.79	-3.3
5,284,130	-		GFF5293	0.79	+0.4
5,284,130	-		GFF5293	0.79	-0.4
5,284,130	-		GFF5293	0.79	-1.8
5,284,130	-		GFF5293	0.79	-0.4
5,284,130	-		GFF5293	0.79	-2.1
5,284,130	-		GFF5293	0.79	+0.2
5,284,130	-		GFF5293	0.79	+0.5
5,284,130	-		GFF5293	0.79	-0.2
5,284,130	-		GFF5293	0.79	-0.1
5,284,132	+		GFF5293	0.79	+0.2
5,284,137	+		GFF5293	0.79	-1.6
5,284,137	+		GFF5293	0.79	-0.8
5,284,140	+		GFF5293	0.79	-2.2
5,284,144	-		GFF5293	0.79	-1.0
5,284,145	-		GFF5293	0.80	-0.0
5,284,145	-		GFF5293	0.80	-0.9
5,284,152	-		GFF5293	0.80	+0.0
5,284,152	-		GFF5293	0.80	-0.8
5,284,196	-		GFF5293	0.81	+0.9
5,284,202	+		GFF5293	0.81	+0.6
5,284,207	+		GFF5293	0.82	-0.0
5,284,211	-		GFF5293	0.82	-0.2
5,284,215	-		GFF5293	0.82	-3.2
5,284,215	-		GFF5293	0.82	-0.0
5,284,215	-		GFF5293	0.82	-1.9
5,284,223	+		GFF5293	0.82	-2.0
5,284,230	-		GFF5293	0.82	-0.5
5,284,235	+		GFF5293	0.83	+0.0
5,284,235	+		GFF5293	0.83	-1.0
5,284,235	+		GFF5293	0.83	-1.9
5,284,243	-		GFF5293	0.83	-0.2
5,284,243	-		GFF5293	0.83	+0.2
5,284,243	-		GFF5293	0.83	+0.3
5,284,243	-		GFF5293	0.83	-1.1
5,284,245	-		GFF5293	0.83	+0.4
5,284,255	+		GFF5293	0.83	-2.5
5,284,269	-		GFF5293	0.84	+0.7
5,284,278	-		GFF5293	0.84	+1.3
5,284,281	+		GFF5293	0.84	+1.2
5,284,286	+		GFF5293	0.84	-0.2
5,284,294	-		GFF5293	0.85	+0.3
5,284,294	-		GFF5293	0.85	-0.8
5,284,294	-		GFF5293	0.85	-0.6
5,284,294	-		GFF5293	0.85	+1.0
5,284,308	+		GFF5293	0.85	-0.2
5,284,308	+		GFF5293	0.85	+0.3
5,284,308	+		GFF5293	0.85	+1.0
5,284,308	+		GFF5293	0.85	-1.1
5,284,308	+		GFF5293	0.85	-0.7
5,284,313	+		GFF5293	0.85	+1.4
5,284,316	-		GFF5293	0.85	+1.1
5,284,316	-		GFF5293	0.85	-0.9
5,284,316	-		GFF5293	0.85	-1.1
5,284,318	+		GFF5293	0.85	+0.2
5,284,318	+		GFF5293	0.85	+1.0
5,284,318	+		GFF5293	0.85	-0.7
5,284,322	+		GFF5293	0.85	-0.9
5,284,322	+		GFF5293	0.85	-0.9
5,284,322	+		GFF5293	0.85	+0.7
5,284,327	+		GFF5293	0.86	-0.7
5,284,329	+		GFF5293	0.86	-1.4
5,284,329	+		GFF5293	0.86	-0.6
5,284,329	+		GFF5293	0.86	-0.9
5,284,329	+		GFF5293	0.86	-0.2
5,284,329	+		GFF5293	0.86	-1.4
5,284,329	+		GFF5293	0.86	-0.8
5,284,330	-		GFF5293	0.86	-1.6
5,284,330	-		GFF5293	0.86	-0.3
5,284,330	-		GFF5293	0.86	+0.0
5,284,330	-		GFF5293	0.86	+0.1
5,284,330	-		GFF5293	0.86	-0.7
5,284,337	-		GFF5293	0.86	-0.4
5,284,337	-		GFF5293	0.86	-0.9
5,284,337	-		GFF5293	0.86	-0.0
5,284,337	-		GFF5293	0.86	-1.9
5,284,337	-		GFF5293	0.86	+0.4
5,284,337	-		GFF5293	0.86	-2.2
5,284,337	-		GFF5293	0.86	-0.5
5,284,343	+		GFF5293	0.86	-0.9
5,284,353	+		GFF5293	0.87	-0.1
5,284,361	-		GFF5293	0.87	-0.2
5,284,392	+		GFF5293	0.88	+0.0
5,284,392	+		GFF5293	0.88	+1.7
5,284,400	-		GFF5293	0.88	-0.2
5,284,400	-		GFF5293	0.88	+0.5
5,284,400	-		GFF5293	0.88	-2.3
5,284,400	-		GFF5293	0.88	-1.2
5,284,400	-		GFF5293	0.88	+0.1
5,284,400	-		GFF5293	0.88	+0.9
5,284,400	-		GFF5293	0.88	+0.1
5,284,411	+		GFF5293	0.89	-1.2
5,284,411	-		GFF5293	0.89	+0.2
5,284,413	+		GFF5293	0.89	+0.8
5,284,416	+		GFF5293	0.89	-0.3
5,284,421	+		GFF5293	0.89	-0.6
5,284,421	-		GFF5293	0.89	+1.7
5,284,421	-		GFF5293	0.89	-2.1
5,284,424	-		GFF5293	0.89	-1.3
5,284,429	-		GFF5293	0.89	+0.3
5,284,429	-		GFF5293	0.89	-0.3
5,284,429	-		GFF5293	0.89	-1.4
5,284,431	-		GFF5293	0.89	+0.3
5,284,433	+		GFF5293	0.89	+0.5
5,284,434	-		GFF5293	0.89	-0.5
5,284,441	-		GFF5293	0.90	-0.8
5,284,441	-		GFF5293	0.90	-1.5
5,284,441	-		GFF5293	0.90	-2.4
5,284,467	+				-1.0
5,284,467	+				-0.6
5,284,467	+				-0.0
5,284,467	+				-0.8
5,284,467	+				-1.4
5,284,467	+				+0.1
5,284,467	+				-0.2
5,284,467	+				-0.9
5,284,467	+				-1.2
5,284,471	-				-0.6
5,284,475	-				+0.4
5,284,475	-				-0.5
5,284,475	-				+0.2
5,284,475	-				+0.5
5,284,475	-				+0.3
5,284,475	-				-0.2
5,284,475	-				-0.6
5,284,475	-				-0.2
5,284,475	-				-0.3
5,284,507	+				-0.0
5,284,508	+				+1.1
5,284,508	+				+0.1
5,284,513	+				-3.3
5,284,516	-				+1.2
5,284,524	+				-1.5
5,284,524	+				-0.3
5,284,524	+				+0.5
5,284,524	+				+0.9
5,284,529	+				-2.1
5,284,530	+				-0.5
5,284,530	+				+0.6
5,284,530	+				-0.8
5,284,530	+				-2.3
5,284,538	-				-0.7
5,284,538	-				-1.3
5,284,540	+				+0.7
5,284,546	-				-0.6
5,284,558	-				-0.2
5,284,577	-				-0.2
5,284,804	+				-0.5
5,284,804	+				+0.3
5,284,804	+				+0.9
5,284,812	-				-0.0
5,284,812	-				+0.7
5,284,812	-				-1.2
5,284,824	-				-1.0
5,284,829	-				+0.5
5,284,841	-				-0.5
5,284,841	-				-1.3
5,284,841	-				+0.5
5,284,841	-				+1.4
5,285,180	+		GFF5295	0.11	-1.3
5,285,239	-		GFF5295	0.16	-1.0
5,285,244	+		GFF5295	0.16	+0.8
5,285,251	+		GFF5295	0.17	-0.1
5,285,252	-		GFF5295	0.17	-1.1
5,285,268	-		GFF5295	0.18	-0.7
5,285,304	+		GFF5295	0.21	-1.7
5,285,309	+		GFF5295	0.22	-1.9
5,285,312	-		GFF5295	0.22	+1.2
5,285,368	+		GFF5295	0.27	-1.1
5,285,369	+		GFF5295	0.27	-0.4
5,285,376	-		GFF5295	0.28	+0.1
5,285,392	-		GFF5295	0.29	-0.4
5,285,415	+		GFF5295	0.31	-0.6
5,285,415	-		GFF5295	0.31	-1.5
5,285,417	+		GFF5295	0.31	-1.4
5,285,425	-		GFF5295	0.32	-0.2
5,285,425	-		GFF5295	0.32	+0.1
5,285,425	-		GFF5295	0.32	-1.9
5,285,449	+		GFF5295	0.34	-0.2
5,285,664	-		GFF5295	0.52	-0.7
5,285,894	+		GFF5295	0.71	-0.6
5,286,003	+		GFF5295	0.80	-0.6
5,286,011	-		GFF5295	0.81	-1.5
5,286,019	-		GFF5295	0.82	-0.7
5,286,024	+		GFF5295	0.82	+0.6
5,286,048	+		GFF5295	0.84	-1.0
5,286,050	+		GFF5295	0.84	-0.7
5,286,050	+		GFF5295	0.84	-2.2
5,286,093	+		GFF5295	0.88	-2.3
5,286,093	+		GFF5295	0.88	-2.7
5,286,098	+		GFF5295	0.88	-0.0
5,286,106	-		GFF5295	0.89	-0.7
5,286,110	+		GFF5295	0.89	-1.1
5,286,118	-				-2.7
5,286,118	-				-2.2
5,286,140	+				-3.1
5,286,142	+				-0.3
5,286,142	+				+0.0
5,286,150	-				+0.7
5,286,172	+				-1.9
5,286,172	+				-0.2
5,286,194	+				-1.2
5,286,202	-				-0.5
5,286,225	-				-2.2
5,286,225	-				-1.2
5,286,225	-				-0.1
5,286,225	-				-0.9
5,286,225	-				-0.3
5,286,225	-				-1.0
5,286,225	-				-1.9
5,286,227	+				-2.2
5,286,231	+				-1.2
5,286,231	+				-0.9
5,286,231	+				-1.0
5,286,239	-				-2.6
5,286,239	-				-0.7
5,286,264	+				-0.5
5,286,269	-				-1.7
5,286,276	+				+1.0
5,286,288	+				-1.3
5,286,292	+				-0.2
5,286,304	-				-1.7
5,286,321	-				-0.7
5,286,323	-				-0.1
5,286,338	+				-0.8
5,286,349	+				-0.3
5,286,370	+				-0.1
5,286,370	+				-0.6
5,286,372	+				+0.9
5,286,372	+				-0.7
5,286,372	+				-1.6
5,286,373	-				+1.3
5,286,373	-				-0.7
5,286,373	-				-0.6
5,286,383	-				-0.6
5,286,385	+				-0.3
5,286,387	+				-0.6
5,286,393	-				-1.9
5,286,395	-				-0.9
5,286,416	+				-2.7
5,286,416	+				+0.3
5,286,416	+				-1.2
5,286,429	+				+0.2
5,286,429	+				-0.5
5,286,437	-				-0.8
5,286,437	-				-2.1
5,286,437	-				-0.1
5,286,439	+				-0.2
5,286,439	+				+0.1
5,286,440	+				-0.3
5,286,440	+				-0.4
5,286,440	+				+0.9
5,286,448	-				-1.6
5,286,448	-				-0.3
5,286,448	-				+0.3
5,286,448	-				-1.6
5,286,448	-				-1.2
5,286,456	-				-0.6
5,286,457	-				-0.8
5,286,469	-				-0.4
5,286,490	+				-0.0
5,286,498	-				-0.6
5,286,500	-				-0.6
5,286,502	+				-1.2
5,286,502	+				+0.4
5,286,502	+				-2.0
5,286,505	-				-2.5
5,286,507	+				+1.3
5,286,510	-				-1.7
5,286,510	-				-3.0
5,286,510	-				-0.2
5,286,510	-				+0.5
5,286,510	-				-0.7
5,286,510	-				-1.2
5,286,510	-				-0.0
5,286,510	-				+0.0
5,286,510	-				-0.7
5,286,517	-				+0.8
5,286,517	-				-1.1
5,286,518	-				-1.2
5,286,522	-				-2.0
5,286,527	-				-0.6
5,286,529	+				-0.6
5,286,534	+		GFF5296	0.10	-1.6
5,286,534	+		GFF5296	0.10	-0.8
5,286,535	+		GFF5296	0.10	+0.2
5,286,542	-		GFF5296	0.11	+0.5
5,286,542	-		GFF5296	0.11	-0.7
5,286,542	-		GFF5296	0.11	-0.7
5,286,542	-		GFF5296	0.11	+0.3
5,286,542	-		GFF5296	0.11	+0.7
5,286,543	-		GFF5296	0.11	-1.9
5,286,550	+		GFF5296	0.12	-1.0
5,286,556	-		GFF5296	0.12	-1.3
5,286,558	-		GFF5296	0.12	+0.3
5,286,568	-		GFF5296	0.13	-1.4
5,286,568	-		GFF5296	0.13	+0.6
5,286,568	-		GFF5296	0.13	-2.1
5,286,577	-		GFF5296	0.14	+0.4
5,286,584	+		GFF5296	0.14	-1.7
5,286,639	+		GFF5296	0.19	-2.1
5,286,639	+		GFF5296	0.19	-2.2
5,286,639	+		GFF5296	0.19	-0.8
5,286,639	+		GFF5296	0.19	-2.0
5,286,647	-		GFF5296	0.20	-1.1
5,286,647	-		GFF5296	0.20	-1.7
5,286,647	-		GFF5296	0.20	-2.2
5,286,649	-		GFF5296	0.20	-0.3
5,286,649	-		GFF5296	0.20	+0.8
5,286,657	-		GFF5296	0.21	-0.7
5,286,669	-		GFF5296	0.22	-1.5
5,286,669	-		GFF5296	0.22	-0.6
5,286,671	-		GFF5296	0.22	+0.2
5,286,672	-		GFF5296	0.22	-0.1
5,286,678	+		GFF5296	0.22	-1.1
5,286,678	+		GFF5296	0.22	-0.0
5,286,678	+		GFF5296	0.22	-0.6
5,286,685	+		GFF5296	0.23	-0.3
5,286,693	-		GFF5296	0.24	-1.4
5,286,695	-		GFF5296	0.24	-1.5
5,286,695	-		GFF5296	0.24	-1.3
5,286,702	-		GFF5296	0.24	-1.2
5,286,708	-		GFF5296	0.25	-0.6
5,286,712	+		GFF5296	0.25	-2.9
5,286,720	-		GFF5296	0.26	-1.4
5,286,746	+		GFF5296	0.28	-1.1
5,286,746	+		GFF5296	0.28	-0.2
5,286,746	+		GFF5296	0.28	-0.6
5,286,746	+		GFF5296	0.28	-1.4
5,286,746	+		GFF5296	0.28	-2.2
5,286,746	+		GFF5296	0.28	-1.9
5,286,746	+		GFF5296	0.28	-0.5
5,286,746	+		GFF5296	0.28	+0.7
5,286,746	+		GFF5296	0.28	-2.2
5,286,746	+		GFF5296	0.28	+0.3
5,286,746	+		GFF5296	0.28	-2.0
5,286,746	+		GFF5296	0.28	+0.3
5,286,746	+		GFF5296	0.28	-0.1
5,286,746	+		GFF5296	0.28	-0.6
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