Strain Fitness in Sphingobium sp. HT1-2 around GFF5248

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
5,243,048	-		GFF5247	0.37	+0.4
5,243,073	+		GFF5247	0.39	-0.2
5,243,083	+		GFF5247	0.39	-2.1
5,243,083	+		GFF5247	0.39	-2.2
5,243,091	+		GFF5247	0.40	-1.6
5,243,091	-		GFF5247	0.40	-0.7
5,243,091	-		GFF5247	0.40	+0.1
5,243,097	-		GFF5247	0.40	-2.2
5,243,099	-		GFF5247	0.40	-0.5
5,243,110	-		GFF5247	0.41	-0.6
5,243,124	+		GFF5247	0.42	+0.5
5,243,176	-		GFF5247	0.46	-1.5
5,243,184	-		GFF5247	0.46	-0.7
5,243,200	-		GFF5247	0.47	-1.0
5,243,202	+		GFF5247	0.48	-2.5
5,243,208	+		GFF5247	0.48	-1.0
5,243,210	-		GFF5247	0.48	-0.0
5,243,211	-		GFF5247	0.48	+0.1
5,243,218	-		GFF5247	0.49	-2.2
5,243,220	+		GFF5247	0.49	-0.8
5,243,242	+		GFF5247	0.50	-2.4
5,243,260	-		GFF5247	0.52	-0.6
5,243,278	+		GFF5247	0.53	+1.4
5,243,278	+		GFF5247	0.53	-0.9
5,243,278	+		GFF5247	0.53	-0.9
5,243,278	+		GFF5247	0.53	-0.0
5,243,278	+		GFF5247	0.53	-0.5
5,243,281	-		GFF5247	0.53	-1.5
5,243,283	+		GFF5247	0.53	-0.2
5,243,286	-		GFF5247	0.53	-0.4
5,243,288	+		GFF5247	0.53	+0.4
5,243,291	-		GFF5247	0.54	-2.9
5,243,313	+		GFF5247	0.55	-0.5
5,243,321	-		GFF5247	0.56	-0.5
5,243,338	+		GFF5247	0.57	-0.2
5,243,342	-		GFF5247	0.57	-2.0
5,243,342	-		GFF5247	0.57	-0.6
5,243,353	+		GFF5247	0.58	-2.0
5,243,361	-		GFF5247	0.58	-2.5
5,243,378	+		GFF5247	0.60	-2.4
5,243,384	-		GFF5247	0.60	-0.7
5,243,386	+		GFF5247	0.60	-0.1
5,243,394	-		GFF5247	0.61	-0.3
5,243,401	-		GFF5247	0.61	-1.8
5,243,401	-		GFF5247	0.61	-1.5
5,243,413	+		GFF5247	0.62	-2.4
5,243,419	-		GFF5247	0.62	-0.8
5,243,446	+		GFF5247	0.64	-0.3
5,243,446	+		GFF5247	0.64	-0.8
5,243,447	+		GFF5247	0.64	-2.8
5,243,447	+		GFF5247	0.64	-0.7
5,243,447	+		GFF5247	0.64	-1.4
5,243,448	+		GFF5247	0.64	-0.2
5,243,448	+		GFF5247	0.64	-2.1
5,243,448	+		GFF5247	0.64	-0.2
5,243,448	-		GFF5247	0.64	-1.0
5,243,448	-		GFF5247	0.64	-1.4
5,243,454	-		GFF5247	0.65	-2.2
5,243,454	-		GFF5247	0.65	-3.0
5,243,455	-		GFF5247	0.65	-1.6
5,243,456	-		GFF5247	0.65	-2.0
5,243,456	-		GFF5247	0.65	-2.3
5,243,478	+		GFF5247	0.66	-1.9
5,243,478	+		GFF5247	0.66	-1.8
5,243,478	+		GFF5247	0.66	-2.2
5,243,478	+		GFF5247	0.66	-1.7
5,243,478	+		GFF5247	0.66	-0.7
5,243,478	+		GFF5247	0.66	-0.7
5,243,481	-		GFF5247	0.67	-0.9
5,243,486	-		GFF5247	0.67	-0.1
5,243,486	-		GFF5247	0.67	-2.4
5,243,486	-		GFF5247	0.67	-0.6
5,243,486	-		GFF5247	0.67	+0.6
5,243,486	-		GFF5247	0.67	-0.7
5,243,486	-		GFF5247	0.67	-2.6
5,243,486	-		GFF5247	0.67	+0.2
5,243,488	-		GFF5247	0.67	-0.4
5,243,564	+		GFF5247	0.72	-1.5
5,243,564	+		GFF5247	0.72	-1.7
5,243,564	+		GFF5247	0.72	-2.6
5,243,564	+		GFF5247	0.72	+0.6
5,243,564	+		GFF5247	0.72	-0.8
5,243,564	+		GFF5247	0.72	-0.4
5,243,564	+		GFF5247	0.72	+0.1
5,243,564	+		GFF5247	0.72	+0.4
5,243,571	-		GFF5247	0.73	-0.9
5,243,572	-		GFF5247	0.73	-1.7
5,243,572	-		GFF5247	0.73	-1.4
5,243,572	-		GFF5247	0.73	-0.0
5,243,605	-		GFF5247	0.75	-0.1
5,243,631	+		GFF5247	0.77	-2.0
5,243,631	+		GFF5247	0.77	-2.0
5,243,631	+		GFF5247	0.77	-1.0
5,243,631	+		GFF5247	0.77	-0.3
5,243,634	+		GFF5247	0.77	-1.1
5,243,636	+		GFF5247	0.77	+0.3
5,243,639	-		GFF5247	0.78	-0.9
5,243,639	-		GFF5247	0.78	-1.7
5,243,639	-		GFF5247	0.78	-1.8
5,243,639	-		GFF5247	0.78	-3.0
5,243,639	-		GFF5247	0.78	-0.0
5,243,639	-		GFF5247	0.78	+0.0
5,243,639	-		GFF5247	0.78	-1.2
5,243,649	+		GFF5247	0.78	+0.0
5,243,664	+		GFF5247	0.79	-3.4
5,243,678	-		GFF5247	0.80	-1.0
5,243,684	-		GFF5247	0.81	+0.4
5,243,691	+		GFF5247	0.81	-0.9
5,243,699	-		GFF5247	0.82	-1.7
5,243,701	-		GFF5247	0.82	-0.4
5,243,701	-		GFF5247	0.82	-3.0
5,243,724	-		GFF5247	0.83	-1.7
5,243,732	+		GFF5247	0.84	-1.0
5,243,740	+		GFF5247	0.84	-1.7
5,243,740	-		GFF5247	0.84	-2.4
5,243,749	+		GFF5247	0.85	-1.7
5,243,755	+		GFF5247	0.85	-2.2
5,243,763	-		GFF5247	0.86	+1.0
5,243,763	-		GFF5247	0.86	-0.9
5,243,811	+		GFF5247	0.89	-2.8
5,243,811	+		GFF5247	0.89	-2.5
5,243,811	+		GFF5247	0.89	+0.0
5,243,811	+		GFF5247	0.89	-1.2
5,243,819	-		GFF5247	0.90	-3.3
5,243,836	-				-2.7
5,243,838	+				-0.3
5,243,838	+				+0.0
5,243,838	+				-0.9
5,243,838	+				-3.2
5,243,846	-				-2.1
5,243,851	-				-1.7
5,243,856	+				-1.0
5,243,856	+				-0.9
5,243,864	-				-2.0
5,243,883	-				-0.0
5,243,884	+				-2.1
5,243,884	+				-0.6
5,243,884	+				-1.1
5,243,884	+				-0.7
5,243,884	+				+0.1
5,243,888	-				-1.1
5,243,889	+				-0.9
5,243,889	+				-0.6
5,243,892	-				-1.5
5,243,892	-				-0.5
5,243,892	-				-2.0
5,243,894	+				-1.7
5,243,897	-				-0.6
5,243,897	-				-2.0
5,243,902	-				+0.7
5,243,902	-				-1.8
5,243,902	-				-1.8
5,243,907	-				-0.9
5,243,928	-				-0.5
5,243,928	-				-1.1
5,243,928	-				-3.0
5,243,948	-				+0.2
5,243,950	+				-0.2
5,243,956	-				-0.1
5,243,994	+				-2.2
5,244,002	-				-1.2
5,244,025	+				-2.0
5,244,040	+				-1.0
5,244,040	+				-0.3
5,244,048	-				-1.7
5,244,048	-				+0.3
5,244,048	-				+0.1
5,244,109	+		GFF5248	0.28	-0.5
5,244,115	-		GFF5248	0.30	-1.7
5,244,132	-		GFF5248	0.36	-0.1
5,244,133	-		GFF5248	0.36	-1.2
5,244,142	-		GFF5248	0.39	-1.3
5,244,172	-		GFF5248	0.50	-1.1
5,244,172	-		GFF5248	0.50	-1.7
5,244,174	+		GFF5248	0.51	-0.5
5,244,174	+		GFF5248	0.51	-0.4
5,244,182	-		GFF5248	0.54	-1.1
5,244,182	-		GFF5248	0.54	-1.1
5,244,182	-		GFF5248	0.54	-1.8
5,244,182	-		GFF5248	0.54	+0.3
5,244,185	+		GFF5248	0.55	+0.5
5,244,191	+		GFF5248	0.57	+0.7
5,244,192	+		GFF5248	0.57	-1.9
5,244,194	-		GFF5248	0.58	+0.8
5,244,196	+		GFF5248	0.59	-1.2
5,244,196	+		GFF5248	0.59	+0.7
5,244,196	+		GFF5248	0.59	-0.5
5,244,196	+		GFF5248	0.59	-0.5
5,244,199	-		GFF5248	0.60	-0.4
5,244,199	-		GFF5248	0.60	-0.4
5,244,199	-		GFF5248	0.60	+0.8
5,244,201	+		GFF5248	0.61	-1.6
5,244,204	-		GFF5248	0.62	-1.9
5,244,204	-		GFF5248	0.62	+0.6
5,244,204	-		GFF5248	0.62	-0.2
5,244,204	-		GFF5248	0.62	-0.7
5,244,204	-		GFF5248	0.62	+0.1
5,244,204	-		GFF5248	0.62	-1.9
5,244,209	-		GFF5248	0.63	-0.6
5,244,211	+		GFF5248	0.64	-0.9
5,244,211	+		GFF5248	0.64	-1.9
5,244,211	+		GFF5248	0.64	-1.3
5,244,219	-		GFF5248	0.67	-0.3
5,244,257	+		GFF5248	0.81	+0.0
5,244,264	+		GFF5248	0.83	-1.7
5,244,265	-		GFF5248	0.84	-1.7
5,244,272	-		GFF5248	0.86	-2.1
5,244,280	-		GFF5248	0.89	+0.5
5,244,284	+				-2.1
5,244,294	-				+1.1
5,244,319	-				-0.3
5,244,378	+		GFF5249	0.16	-1.2
5,244,384	+		GFF5249	0.18	-0.2
5,244,384	+		GFF5249	0.18	-1.6
5,244,384	+		GFF5249	0.18	+0.1
5,244,385	+		GFF5249	0.18	-0.7
5,244,392	-		GFF5249	0.20	-2.2
5,244,393	+		GFF5249	0.20	-1.8
5,244,394	-		GFF5249	0.20	-2.3
5,244,412	+		GFF5249	0.25	+0.2
5,244,420	-		GFF5249	0.27	-1.1
5,244,533	+		GFF5249	0.55	+0.9
5,244,541	-		GFF5249	0.57	-1.5
5,244,597	-		GFF5249	0.71	+0.2
5,244,647	-		GFF5249	0.83	+0.1
5,244,830	-		GFF5250	0.12	-1.8
5,244,831	+		GFF5250	0.13	-1.4
5,244,851	+		GFF5250	0.16	-1.1
5,244,851	+		GFF5250	0.16	-1.1
5,244,851	+		GFF5250	0.16	-0.7
5,244,859	-		GFF5250	0.17	-0.7
5,244,859	-		GFF5250	0.17	-1.9
5,244,989	+		GFF5250	0.37	-1.7
5,245,127	+		GFF5250	0.57	-0.4
5,245,300	-		GFF5250	0.84	+0.7