Strain Fitness in Sphingobium sp. HT1-2 around GFF5240

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5239 and GFF5240 are separated by 119 nucleotidesGFF5240 and GFF5241 are separated by 531 nucleotides GFF5239 - Polyhydroxyalkanoic acid synthase, at 5,233,541 to 5,235,292 GFF5239 GFF5240 - hypothetical protein, at 5,235,412 to 5,236,086 GFF5240 GFF5241 - Transcriptional regulator, AcrR family, at 5,236,618 to 5,237,184 GFF5241 Position (kb) 5235 5236 5237Strain fitness (log2 ratio) -2 -1 0 1 2at 5234.412 kb on + strand, within GFF5239at 5234.462 kb on + strand, within GFF5239at 5234.493 kb on + strand, within GFF5239at 5234.493 kb on + strand, within GFF5239at 5234.501 kb on - strand, within GFF5239at 5234.501 kb on - strand, within GFF5239at 5234.501 kb on - strand, within GFF5239at 5234.520 kb on - strand, within GFF5239at 5234.529 kb on - strand, within GFF5239at 5234.580 kb on + strand, within GFF5239at 5234.590 kb on + strand, within GFF5239at 5234.622 kb on + strand, within GFF5239at 5234.622 kb on + strand, within GFF5239at 5234.709 kb on - strand, within GFF5239at 5234.723 kb on + strand, within GFF5239at 5234.736 kb on - strand, within GFF5239at 5234.909 kb on + strand, within GFF5239at 5234.909 kb on + strand, within GFF5239at 5234.909 kb on + strand, within GFF5239at 5234.917 kb on - strand, within GFF5239at 5234.917 kb on - strand, within GFF5239at 5234.950 kb on + strand, within GFF5239at 5234.973 kb on + strand, within GFF5239at 5235.014 kb on + strand, within GFF5239at 5235.023 kb on - strand, within GFF5239at 5235.037 kb on + strand, within GFF5239at 5235.037 kb on + strand, within GFF5239at 5235.047 kb on - strand, within GFF5239at 5235.085 kb on + strand, within GFF5239at 5235.106 kb on + strand, within GFF5239at 5235.117 kb on + strandat 5235.119 kb on + strandat 5235.144 kb on - strandat 5235.160 kb on + strandat 5235.165 kb on + strandat 5235.168 kb on - strandat 5235.170 kb on + strandat 5235.173 kb on - strandat 5235.186 kb on + strandat 5235.194 kb on - strandat 5235.196 kb on + strandat 5235.196 kb on + strandat 5235.196 kb on + strandat 5235.197 kb on - strandat 5235.204 kb on - strandat 5235.254 kb on + strandat 5235.255 kb on - strandat 5235.270 kb on + strandat 5235.283 kb on - strandat 5235.293 kb on + strandat 5235.310 kb on - strandat 5235.322 kb on - strandat 5235.335 kb on + strandat 5235.425 kb on + strandat 5235.463 kb on - strandat 5235.487 kb on + strand, within GFF5240at 5235.517 kb on - strand, within GFF5240at 5235.527 kb on - strand, within GFF5240at 5235.562 kb on - strand, within GFF5240at 5235.562 kb on - strand, within GFF5240at 5235.566 kb on + strand, within GFF5240at 5235.598 kb on - strand, within GFF5240at 5235.684 kb on + strand, within GFF5240at 5235.684 kb on + strand, within GFF5240at 5235.684 kb on + strand, within GFF5240at 5235.684 kb on + strand, within GFF5240at 5235.692 kb on - strand, within GFF5240at 5235.692 kb on - strand, within GFF5240at 5235.692 kb on - strand, within GFF5240at 5235.692 kb on - strand, within GFF5240at 5235.697 kb on - strand, within GFF5240at 5235.697 kb on - strand, within GFF5240at 5235.730 kb on + strand, within GFF5240at 5235.857 kb on - strand, within GFF5240at 5235.857 kb on - strand, within GFF5240at 5235.877 kb on - strand, within GFF5240at 5235.907 kb on + strand, within GFF5240at 5235.946 kb on + strand, within GFF5240at 5235.946 kb on + strand, within GFF5240at 5236.022 kb on + strandat 5236.130 kb on + strandat 5236.179 kb on - strandat 5236.179 kb on - strandat 5236.250 kb on + strandat 5236.254 kb on - strandat 5236.263 kb on + strandat 5236.263 kb on + strandat 5236.271 kb on - strandat 5236.310 kb on - strandat 5236.331 kb on - strandat 5236.331 kb on - strandat 5236.338 kb on - strandat 5236.366 kb on + strandat 5236.366 kb on + strandat 5236.366 kb on - strandat 5236.374 kb on - strandat 5236.432 kb on - strandat 5236.444 kb on - strandat 5236.450 kb on + strandat 5236.456 kb on + strandat 5236.456 kb on + strandat 5236.492 kb on - strandat 5236.607 kb on + strandat 5236.651 kb on + strandat 5236.651 kb on + strandat 5236.651 kb on + strandat 5236.651 kb on + strandat 5236.651 kb on + strandat 5236.651 kb on + strandat 5236.651 kb on + strandat 5236.651 kb on + strandat 5236.651 kb on + strandat 5236.651 kb on + strandat 5236.651 kb on + strandat 5236.651 kb on + strandat 5236.651 kb on + strandat 5236.651 kb on + strandat 5236.659 kb on - strandat 5236.659 kb on - strandat 5236.659 kb on - strandat 5236.659 kb on - strandat 5236.659 kb on - strandat 5236.659 kb on - strandat 5236.703 kb on - strand, within GFF5241at 5236.787 kb on - strand, within GFF5241at 5236.839 kb on + strand, within GFF5241at 5236.856 kb on + strand, within GFF5241at 5236.890 kb on + strand, within GFF5241at 5236.913 kb on + strand, within GFF5241at 5236.913 kb on + strand, within GFF5241at 5236.924 kb on + strand, within GFF5241at 5236.938 kb on - strand, within GFF5241at 5236.971 kb on - strand, within GFF5241at 5236.978 kb on + strand, within GFF5241at 5236.978 kb on + strand, within GFF5241at 5236.978 kb on + strand, within GFF5241at 5236.983 kb on + strand, within GFF5241at 5236.983 kb on + strand, within GFF5241at 5236.983 kb on + strand, within GFF5241at 5236.986 kb on - strand, within GFF5241at 5236.986 kb on - strand, within GFF5241at 5236.986 kb on - strand, within GFF5241at 5236.986 kb on - strand, within GFF5241at 5236.990 kb on + strand, within GFF5241at 5236.991 kb on - strand, within GFF5241at 5236.991 kb on - strand, within GFF5241at 5236.991 kb on - strand, within GFF5241at 5236.991 kb on - strand, within GFF5241at 5236.991 kb on - strand, within GFF5241at 5236.991 kb on - strand, within GFF5241at 5236.991 kb on - strand, within GFF5241at 5236.991 kb on - strand, within GFF5241at 5236.991 kb on - strand, within GFF5241at 5236.991 kb on - strand, within GFF5241at 5236.991 kb on - strand, within GFF5241at 5236.991 kb on - strand, within GFF5241at 5236.991 kb on - strand, within GFF5241at 5236.991 kb on - strand, within GFF5241at 5237.017 kb on - strand, within GFF5241at 5237.031 kb on + strand, within GFF5241at 5237.039 kb on - strand, within GFF5241at 5237.039 kb on - strand, within GFF5241at 5237.039 kb on - strand, within GFF5241at 5237.039 kb on - strand, within GFF5241at 5237.039 kb on - strand, within GFF5241at 5237.044 kb on + strand, within GFF5241

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate
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5,234,412 + GFF5239 0.50 +2.0
5,234,462 + GFF5239 0.53 -1.4
5,234,493 + GFF5239 0.54 +0.8
5,234,493 + GFF5239 0.54 +1.0
5,234,501 - GFF5239 0.55 -1.9
5,234,501 - GFF5239 0.55 +0.4
5,234,501 - GFF5239 0.55 -2.0
5,234,520 - GFF5239 0.56 +0.1
5,234,529 - GFF5239 0.56 -1.3
5,234,580 + GFF5239 0.59 -0.0
5,234,590 + GFF5239 0.60 -0.3
5,234,622 + GFF5239 0.62 +2.2
5,234,622 + GFF5239 0.62 -0.0
5,234,709 - GFF5239 0.67 +1.3
5,234,723 + GFF5239 0.67 +1.8
5,234,736 - GFF5239 0.68 +0.3
5,234,909 + GFF5239 0.78 -0.3
5,234,909 + GFF5239 0.78 -2.6
5,234,909 + GFF5239 0.78 -0.6
5,234,917 - GFF5239 0.79 +0.7
5,234,917 - GFF5239 0.79 -0.7
5,234,950 + GFF5239 0.80 -0.1
5,234,973 + GFF5239 0.82 +0.4
5,235,014 + GFF5239 0.84 -0.5
5,235,023 - GFF5239 0.85 +0.2
5,235,037 + GFF5239 0.85 +0.2
5,235,037 + GFF5239 0.85 +0.2
5,235,047 - GFF5239 0.86 -0.0
5,235,085 + GFF5239 0.88 -0.6
5,235,106 + GFF5239 0.89 +1.3
5,235,117 + -0.0
5,235,119 + +0.6
5,235,144 - +1.3
5,235,160 + +0.2
5,235,165 + +0.2
5,235,168 - -0.5
5,235,170 + +0.2
5,235,173 - +1.1
5,235,186 + -0.4
5,235,194 - +0.9
5,235,196 + -1.1
5,235,196 + +1.2
5,235,196 + +1.5
5,235,197 - -0.7
5,235,204 - +1.3
5,235,254 + -0.5
5,235,255 - +0.6
5,235,270 + +0.8
5,235,283 - -0.0
5,235,293 + +0.4
5,235,310 - -1.0
5,235,322 - -0.5
5,235,335 + -0.1
5,235,425 + -1.3
5,235,463 - -0.6
5,235,487 + GFF5240 0.11 +0.9
5,235,517 - GFF5240 0.16 -1.5
5,235,527 - GFF5240 0.17 +0.2
5,235,562 - GFF5240 0.22 +0.1
5,235,562 - GFF5240 0.22 +0.5
5,235,566 + GFF5240 0.23 +0.5
5,235,598 - GFF5240 0.28 -0.0
5,235,684 + GFF5240 0.40 +0.1
5,235,684 + GFF5240 0.40 -1.7
5,235,684 + GFF5240 0.40 +0.4
5,235,684 + GFF5240 0.40 +0.1
5,235,692 - GFF5240 0.41 +1.3
5,235,692 - GFF5240 0.41 +0.2
5,235,692 - GFF5240 0.41 +0.8
5,235,692 - GFF5240 0.41 -0.3
5,235,697 - GFF5240 0.42 -0.3
5,235,697 - GFF5240 0.42 -0.6
5,235,730 + GFF5240 0.47 -0.2
5,235,857 - GFF5240 0.66 +0.4
5,235,857 - GFF5240 0.66 +0.1
5,235,877 - GFF5240 0.69 +1.0
5,235,907 + GFF5240 0.73 -1.0
5,235,946 + GFF5240 0.79 +0.4
5,235,946 + GFF5240 0.79 -0.2
5,236,022 + +2.3
5,236,130 + +0.9
5,236,179 - +0.1
5,236,179 - +1.6
5,236,250 + +2.2
5,236,254 - +0.4
5,236,263 + +2.3
5,236,263 + +1.1
5,236,271 - +1.0
5,236,310 - -1.2
5,236,331 - +0.4
5,236,331 - -0.4
5,236,338 - +0.7
5,236,366 + +0.6
5,236,366 + -1.6
5,236,366 - +0.5
5,236,374 - +0.1
5,236,432 - +0.7
5,236,444 - +0.6
5,236,450 + +0.0
5,236,456 + -0.2
5,236,456 + -1.4
5,236,492 - +0.5
5,236,607 + +1.1
5,236,651 + +1.4
5,236,651 + +0.9
5,236,651 + +0.8
5,236,651 + +0.5
5,236,651 + +2.1
5,236,651 + +0.2
5,236,651 + +0.4
5,236,651 + +0.1
5,236,651 + -0.9
5,236,651 + +1.4
5,236,651 + +0.4
5,236,651 + -0.5
5,236,651 + -1.1
5,236,651 + +0.8
5,236,659 - -0.6
5,236,659 - +0.4
5,236,659 - -0.4
5,236,659 - +0.0
5,236,659 - -1.4
5,236,659 - +0.1
5,236,703 - GFF5241 0.15 +0.4
5,236,787 - GFF5241 0.30 -0.8
5,236,839 + GFF5241 0.39 +0.7
5,236,856 + GFF5241 0.42 +0.8
5,236,890 + GFF5241 0.48 -2.0
5,236,913 + GFF5241 0.52 -0.5
5,236,913 + GFF5241 0.52 +0.2
5,236,924 + GFF5241 0.54 -1.7
5,236,938 - GFF5241 0.56 -0.3
5,236,971 - GFF5241 0.62 +0.3
5,236,978 + GFF5241 0.63 +1.0
5,236,978 + GFF5241 0.63 -1.2
5,236,978 + GFF5241 0.63 -0.3
5,236,983 + GFF5241 0.64 -1.8
5,236,983 + GFF5241 0.64 -1.0
5,236,983 + GFF5241 0.64 -0.1
5,236,986 - GFF5241 0.65 +1.2
5,236,986 - GFF5241 0.65 +2.3
5,236,986 - GFF5241 0.65 -0.4
5,236,986 - GFF5241 0.65 -1.1
5,236,990 + GFF5241 0.66 +0.4
5,236,991 - GFF5241 0.66 -0.6
5,236,991 - GFF5241 0.66 -0.6
5,236,991 - GFF5241 0.66 -0.0
5,236,991 - GFF5241 0.66 -0.8
5,236,991 - GFF5241 0.66 +0.2
5,236,991 - GFF5241 0.66 +0.4
5,236,991 - GFF5241 0.66 -0.6
5,236,991 - GFF5241 0.66 -1.6
5,236,991 - GFF5241 0.66 -0.2
5,236,991 - GFF5241 0.66 -0.7
5,236,991 - GFF5241 0.66 -1.2
5,236,991 - GFF5241 0.66 -1.5
5,236,991 - GFF5241 0.66 +1.5
5,236,991 - GFF5241 0.66 -0.7
5,237,017 - GFF5241 0.70 -0.0
5,237,031 + GFF5241 0.73 -0.6
5,237,039 - GFF5241 0.74 +1.0
5,237,039 - GFF5241 0.74 -0.7
5,237,039 - GFF5241 0.74 +1.0
5,237,039 - GFF5241 0.74 -0.0
5,237,039 - GFF5241 0.74 -1.0
5,237,044 + GFF5241 0.75 -0.0

Or see this region's nucleotide sequence