Strain Fitness in Sphingobium sp. HT1-2 around GFF5229

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
5,220,572	+		GFF5227	0.32	-1.1
5,220,641	-		GFF5227	0.43	-0.7
5,220,692	+		GFF5227	0.50	+1.4
5,220,692	+		GFF5227	0.50	+0.3
5,220,700	+		GFF5227	0.51	+0.6
5,220,721	-		GFF5227	0.55	+0.7
5,220,721	-		GFF5227	0.55	+0.3
5,220,731	-		GFF5227	0.56	+1.5
5,220,732	+		GFF5227	0.56	+0.4
5,220,740	-		GFF5227	0.57	-1.1
5,220,771	-		GFF5227	0.62	-1.0
5,220,773	+		GFF5227	0.62	+0.8
5,220,821	-		GFF5227	0.70	+0.0
5,220,831	-		GFF5227	0.71	+0.3
5,220,865	+		GFF5227	0.76	-1.6
5,220,899	-		GFF5227	0.81	-0.7
5,220,912	-		GFF5227	0.83	-0.4
5,220,912	-		GFF5227	0.83	+0.7
5,220,922	-		GFF5227	0.85	-2.4
5,220,949	-		GFF5227	0.89	+0.0
5,220,952	+		GFF5227	0.89	-0.2
5,221,012	-				-1.7
5,221,018	+				-0.6
5,221,018	+				-0.8
5,221,018	+				+1.0
5,221,019	+				+0.5
5,221,024	+				+1.0
5,221,026	-				+1.6
5,221,026	-				+0.8
5,221,026	-				+0.1
5,221,026	-				+0.7
5,221,026	-				-2.1
5,221,026	-				-0.1
5,221,033	-				-0.5
5,221,084	+				+0.7
5,221,084	+				-1.2
5,221,087	-				+1.1
5,221,099	-				-1.8
5,221,134	+				-0.9
5,221,171	+		GFF5228	0.16	-0.5
5,221,171	+		GFF5228	0.16	-0.3
5,221,171	+		GFF5228	0.16	-0.8
5,221,171	+		GFF5228	0.16	+0.3
5,221,171	+		GFF5228	0.16	+0.9
5,221,171	+		GFF5228	0.16	+0.1
5,221,171	+		GFF5228	0.16	-0.5
5,221,176	+		GFF5228	0.18	+0.5
5,221,179	-		GFF5228	0.19	+0.9
5,221,179	-		GFF5228	0.19	+0.3
5,221,179	-		GFF5228	0.19	-0.4
5,221,179	-		GFF5228	0.19	+1.0
5,221,179	-		GFF5228	0.19	-0.3
5,221,179	-		GFF5228	0.19	-2.5
5,221,179	-		GFF5228	0.19	+0.0
5,221,181	+		GFF5228	0.19	-0.5
5,221,186	-		GFF5228	0.21	+0.6
5,221,217	-		GFF5228	0.31	+0.3
5,221,223	+		GFF5228	0.33	-1.4
5,221,223	+		GFF5228	0.33	+0.6
5,221,223	+		GFF5228	0.33	-1.1
5,221,229	+		GFF5228	0.35	-0.5
5,221,229	+		GFF5228	0.35	+0.4
5,221,231	-		GFF5228	0.36	-0.1
5,221,237	-		GFF5228	0.38	-0.1
5,221,237	-		GFF5228	0.38	+0.7
5,221,237	-		GFF5228	0.38	-0.7
5,221,242	-		GFF5228	0.39	-1.1
5,221,550	+				-0.1
5,221,562	+				+0.5
5,221,620	+		GFF5229	0.14	-0.5
5,221,628	-		GFF5229	0.16	-0.2
5,221,628	-		GFF5229	0.16	-0.6
5,221,640	+		GFF5229	0.20	+0.9
5,221,643	+		GFF5229	0.20	+1.0
5,221,648	-		GFF5229	0.22	-0.7
5,221,648	-		GFF5229	0.22	+0.6
5,221,651	-		GFF5229	0.23	-0.1
5,221,651	-		GFF5229	0.23	-1.6
5,221,651	-		GFF5229	0.23	-0.0
5,221,687	+		GFF5229	0.33	-0.4
5,221,694	-		GFF5229	0.35	-1.2
5,221,728	+		GFF5229	0.45	-0.1
5,221,738	+		GFF5229	0.48	-0.2
5,221,746	-		GFF5229	0.50	-0.4
5,221,746	-		GFF5229	0.50	+1.5
5,221,748	+		GFF5229	0.51	-0.1
5,221,756	-		GFF5229	0.53	-1.9
5,221,760	+		GFF5229	0.54	-1.0
5,221,763	-		GFF5229	0.55	-1.5
5,221,763	-		GFF5229	0.55	+1.4
5,221,778	+		GFF5229	0.59	-0.6
5,221,789	-		GFF5229	0.62	-0.9
5,221,789	-		GFF5229	0.62	+0.8
5,221,789	-		GFF5229	0.62	-0.1
5,221,814	-		GFF5229	0.70	+1.3
5,221,837	+		GFF5229	0.76	-0.5
5,221,869	+		GFF5229	0.85	-0.4
5,221,883	-		GFF5229	0.89	+0.9
5,221,883	-		GFF5229	0.89	+0.2
5,221,892	-				+1.0
5,221,893	-				-0.7
5,221,905	+				-0.9
5,221,913	-				+0.7
5,221,934	-				-0.4
5,221,944	+				-1.1
5,221,944	+				+0.8
5,221,944	+				+0.4
5,221,944	+				+0.7
5,221,947	-				-2.2
5,221,952	-				+0.1
5,221,952	-				+0.2
5,221,952	-				-0.9
5,221,952	-				-0.6
5,221,956	-				-1.0
5,221,956	-				-0.3
5,221,966	-				-1.2
5,221,979	+				-1.0
5,221,993	+		GFF5230	0.12	-0.5
5,222,035	+		GFF5230	0.25	+0.3
5,222,076	-		GFF5230	0.37	-0.7
5,222,076	-		GFF5230	0.37	-0.6
5,222,077	-		GFF5230	0.37	-0.5
5,222,085	+		GFF5230	0.39	-1.7
5,222,085	+		GFF5230	0.39	-2.2
5,222,085	+		GFF5230	0.39	+0.4
5,222,085	+		GFF5230	0.39	-0.6
5,222,085	+		GFF5230	0.39	+0.2
5,222,093	-		GFF5230	0.42	+0.2
5,222,093	-		GFF5230	0.42	-0.6
5,222,093	-		GFF5230	0.42	-1.6
5,222,101	-		GFF5230	0.44	-1.2
5,222,117	+		GFF5230	0.49	-0.2
5,222,118	+		GFF5230	0.49	-0.6
5,222,122	-		GFF5230	0.50	-1.5
5,222,126	-		GFF5230	0.51	-0.3
5,222,127	+		GFF5230	0.51	+0.6
5,222,137	+		GFF5230	0.54	+1.2
5,222,145	-		GFF5230	0.57	+0.6
5,222,176	-		GFF5230	0.66	+0.3
5,222,185	+		GFF5230	0.68	+0.7
5,222,185	+		GFF5230	0.68	+0.2
5,222,186	-		GFF5230	0.69	+0.7
5,222,190	+		GFF5230	0.70	-1.7
5,222,190	+		GFF5230	0.70	-0.4
5,222,190	+		GFF5230	0.70	+1.8
5,222,193	-		GFF5230	0.71	+1.3
5,222,193	-		GFF5230	0.71	-1.7
5,222,195	+		GFF5230	0.71	-0.1
5,222,195	+		GFF5230	0.71	-0.0
5,222,195	+		GFF5230	0.71	-1.0
5,222,209	+		GFF5230	0.75	+0.2
5,222,212	+		GFF5230	0.76	+1.2
5,222,255	+		GFF5230	0.89	-1.0
5,222,255	+		GFF5230	0.89	+0.4
5,222,297	+				+0.3
5,222,297	+				-1.0
5,222,302	+				+0.3
5,222,302	+				-0.6
5,222,302	+				-0.3
5,222,305	-				+1.0
5,222,305	-				-0.9
5,222,307	-				-0.1
5,222,310	-				-0.4
5,222,310	-				+1.1
5,222,312	+				+1.2
5,222,325	+				+0.3
5,222,342	+				-0.8
5,222,343	+				+0.4
5,222,343	+				-2.2
5,222,386	-				-0.2
5,222,386	-				+0.9
5,222,388	-				+0.1
5,222,445	+				+0.1
5,222,445	+				+0.1
5,222,452	-				-1.1
5,222,466	-				-0.4
5,222,513	+				-0.3
5,222,521	-				-0.4
5,222,542	+				-0.2
5,222,550	-				-0.0
5,222,550	-				-0.2
5,222,550	-				-0.6
5,222,552	+				-0.7
5,222,560	-				+0.0
5,222,569	-				-0.4
5,222,574	-				-0.7
5,222,581	-				-0.9
5,222,589	-				-0.5
5,222,591	+				+0.9
5,222,591	+				+0.8
5,222,594	-				+1.5
5,222,596	+				-1.1
5,222,596	+				+0.0
5,222,596	+				-2.0
5,222,596	+				-1.1
5,222,599	-				-1.1
5,222,599	-				-0.0
5,222,604	-				+0.1
5,222,604	-				-1.4
5,222,604	-				-1.2
5,222,609	-				+0.4
5,222,629	+				-0.6
5,222,639	+				-0.7
5,222,639	+				+0.3
5,222,642	-				-0.1
5,222,642	-				+1.1
5,222,645	-				-1.7
5,222,689	+				-0.3
5,222,689	+				-1.9
5,222,699	-				-0.5
5,222,699	-				-1.3
5,222,713	+				-1.1
5,222,723	-		GFF5231	0.11	+1.5
5,222,740	-		GFF5231	0.12	-0.4
5,222,753	+		GFF5231	0.13	+1.4
5,222,761	-		GFF5231	0.13	-2.0
5,222,770	+		GFF5231	0.14	+1.1
5,222,774	-		GFF5231	0.14	+0.3
5,222,787	+		GFF5231	0.15	+1.1
5,222,787	+		GFF5231	0.15	+0.3
5,222,814	-		GFF5231	0.17	-1.0
5,222,838	-		GFF5231	0.19	-0.8
5,222,849	+		GFF5231	0.20	-0.7
5,222,849	+		GFF5231	0.20	-2.1
5,222,857	-		GFF5231	0.20	-0.2
5,222,891	+		GFF5231	0.23	-0.5
5,222,896	+		GFF5231	0.23	+0.7
5,222,896	+		GFF5231	0.23	-0.0
5,222,899	-		GFF5231	0.23	-0.0
5,222,899	-		GFF5231	0.23	+1.4
5,222,899	-		GFF5231	0.23	-0.5
5,222,899	-		GFF5231	0.23	-0.5
5,222,901	+		GFF5231	0.23	+0.2