Strain Fitness in Sphingobium sp. HT1-2 around GFF5216

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
5,210,161	-		GFF5213	0.64	+0.7
5,210,161	-		GFF5213	0.64	-0.2
5,210,203	+		GFF5213	0.70	-0.5
5,210,231	-		GFF5213	0.73	+0.8
5,210,231	-		GFF5213	0.73	+0.2
5,210,233	+		GFF5213	0.73	-1.6
5,210,241	-		GFF5213	0.74	-0.4
5,210,241	-		GFF5213	0.74	+0.2
5,210,252	-		GFF5213	0.76	+0.1
5,210,259	+		GFF5213	0.77	-2.5
5,210,283	-		GFF5213	0.80	-0.9
5,210,283	-		GFF5213	0.80	+1.2
5,210,306	+		GFF5213	0.83	-0.9
5,210,318	+		GFF5213	0.84	+0.9
5,210,318	+		GFF5213	0.84	+0.6
5,210,318	+		GFF5213	0.84	+0.5
5,210,326	-		GFF5213	0.85	+0.4
5,210,332	-		GFF5213	0.86	+1.3
5,210,343	-		GFF5213	0.88	+1.6
5,210,408	+				-0.5
5,210,432	+				-1.6
5,210,434	-				+0.1
5,210,435	-				-0.6
5,210,438	+				-0.6
5,210,453	+				-0.6
5,210,565	+		GFF5214	0.24	+0.9
5,210,592	+		GFF5214	0.30	-0.6
5,210,667	-		GFF5214	0.48	-0.1
5,210,669	-		GFF5214	0.48	-1.7
5,210,752	-		GFF5214	0.68	+0.1
5,210,757	+		GFF5214	0.69	+1.0
5,210,772	+		GFF5214	0.73	-1.0
5,210,780	-		GFF5214	0.75	+0.7
5,210,875	+				+1.0
5,210,880	+				+0.1
5,210,917	-				-0.5
5,210,938	+				+0.1
5,210,938	+				-0.3
5,210,943	+				-1.7
5,210,943	+				+0.8
5,210,946	-				-0.7
5,210,946	-				+0.3
5,210,946	-				+0.6
5,210,946	-				-1.1
5,210,951	-				+0.1
5,211,016	+				+0.1
5,211,030	-				-0.5
5,211,041	+				-0.0
5,211,056	+				-1.7
5,211,056	+				-0.3
5,211,095	+		GFF5215	0.37	+0.3
5,211,103	-		GFF5215	0.43	-0.0
5,211,141	+		GFF5215	0.75	-0.0
5,211,142	-		GFF5215	0.76	-1.6
5,211,165	+				+0.4
5,211,173	-				-0.8
5,211,183	-				-1.7
5,211,196	+				-0.3
5,211,206	-				-1.1
5,211,208	+				+0.2
5,211,213	+				+0.9
5,211,213	+				+0.4
5,211,216	-				-1.7
5,211,221	-				-0.8
5,211,221	-				-0.8
5,211,221	-				-1.2
5,211,235	+				+0.3
5,211,245	-				-1.3
5,211,261	+				+0.5
5,211,298	-				-1.4
5,211,306	-		GFF5216	0.10	-0.4
5,211,308	+		GFF5216	0.10	-0.0
5,211,313	+		GFF5216	0.11	+0.4
5,211,316	-		GFF5216	0.11	+1.0
5,211,316	-		GFF5216	0.11	-0.1
5,211,316	-		GFF5216	0.11	+0.5
5,211,316	-		GFF5216	0.11	+0.4
5,211,316	-		GFF5216	0.11	+0.5
5,211,355	+		GFF5216	0.14	+0.7
5,211,431	+		GFF5216	0.19	-1.1
5,211,431	+		GFF5216	0.19	-1.5
5,211,437	+		GFF5216	0.20	+0.2
5,211,439	-		GFF5216	0.20	+0.3
5,211,439	-		GFF5216	0.20	-1.9
5,211,439	-		GFF5216	0.20	-0.1
5,211,445	+		GFF5216	0.20	-0.4
5,211,463	+		GFF5216	0.21	+0.5
5,211,471	-		GFF5216	0.22	-1.0
5,211,507	+		GFF5216	0.24	+0.7
5,211,515	-		GFF5216	0.25	-1.7
5,211,530	-		GFF5216	0.26	-1.2
5,211,562	+		GFF5216	0.28	-2.2
5,211,562	+		GFF5216	0.28	+1.0
5,211,573	+		GFF5216	0.29	+0.2
5,211,573	+		GFF5216	0.29	-1.1
5,211,581	-		GFF5216	0.30	+0.0
5,211,604	+		GFF5216	0.31	-0.6
5,211,610	+		GFF5216	0.32	-0.6
5,211,612	-		GFF5216	0.32	+0.2
5,211,618	-		GFF5216	0.32	+0.7
5,211,618	-		GFF5216	0.32	+1.0
5,211,628	+		GFF5216	0.33	-1.6
5,211,628	+		GFF5216	0.33	-0.2
5,211,643	+		GFF5216	0.34	+0.5
5,211,644	-		GFF5216	0.34	-2.5
5,211,644	-		GFF5216	0.34	-0.3
5,211,646	+		GFF5216	0.34	-0.1
5,211,654	-		GFF5216	0.35	-1.6
5,211,654	-		GFF5216	0.35	-0.2
5,211,654	-		GFF5216	0.35	-0.4
5,211,661	+		GFF5216	0.35	-0.1
5,211,668	+		GFF5216	0.36	-0.3
5,211,673	+		GFF5216	0.36	-0.1
5,211,694	+		GFF5216	0.38	+0.6
5,211,696	+		GFF5216	0.38	-1.7
5,211,702	-		GFF5216	0.38	-2.1
5,211,704	-		GFF5216	0.38	-0.5
5,211,704	-		GFF5216	0.38	-0.7
5,211,712	-		GFF5216	0.39	-0.2
5,211,744	+		GFF5216	0.41	-0.1
5,211,744	+		GFF5216	0.41	-0.3
5,211,751	-		GFF5216	0.42	-0.3
5,211,752	-		GFF5216	0.42	+0.2
5,211,760	-		GFF5216	0.42	-2.1
5,211,761	+		GFF5216	0.42	+0.6
5,211,762	-		GFF5216	0.43	-0.9
5,211,771	+		GFF5216	0.43	-1.4
5,211,771	+		GFF5216	0.43	+0.5
5,211,779	-		GFF5216	0.44	+0.0
5,211,779	-		GFF5216	0.44	-0.1
5,211,779	-		GFF5216	0.44	+0.6
5,211,784	+		GFF5216	0.44	-1.1
5,211,784	-		GFF5216	0.44	-1.0
5,211,853	-		GFF5216	0.49	+0.6
5,211,854	-		GFF5216	0.49	-0.7
5,211,859	+		GFF5216	0.49	-1.4
5,211,867	-		GFF5216	0.50	+0.1
5,211,872	-		GFF5216	0.50	+0.9
5,211,899	+		GFF5216	0.52	+0.1
5,211,920	+		GFF5216	0.54	+0.7
5,211,920	-		GFF5216	0.54	-0.7
5,211,922	+		GFF5216	0.54	-0.9
5,211,928	-		GFF5216	0.54	-0.4
5,211,930	-		GFF5216	0.54	+0.2
5,211,930	-		GFF5216	0.54	-0.2
5,211,932	+		GFF5216	0.55	+1.6
5,211,961	+		GFF5216	0.57	+0.7
5,211,961	+		GFF5216	0.57	+0.8
5,211,961	+		GFF5216	0.57	+0.2
5,211,969	-		GFF5216	0.57	-1.0
5,211,969	-		GFF5216	0.57	+0.4
5,211,969	-		GFF5216	0.57	+0.4
5,211,995	-		GFF5216	0.59	-2.0
5,211,998	+		GFF5216	0.59	-1.1
5,212,003	+		GFF5216	0.60	-1.3
5,212,011	-		GFF5216	0.60	-1.2
5,212,022	+		GFF5216	0.61	-2.9
5,212,030	-		GFF5216	0.62	-1.8
5,212,038	-		GFF5216	0.62	-0.5
5,212,043	+		GFF5216	0.62	-0.1
5,212,076	+		GFF5216	0.65	-0.4
5,212,104	+		GFF5216	0.67	-0.5
5,212,112	-		GFF5216	0.67	+1.2
5,212,116	+		GFF5216	0.68	-1.7
5,212,125	+		GFF5216	0.68	+0.8
5,212,140	+		GFF5216	0.69	+0.9
5,212,140	+		GFF5216	0.69	+0.6
5,212,140	-		GFF5216	0.69	-0.1
5,212,148	-		GFF5216	0.70	+0.1
5,212,168	+		GFF5216	0.71	+1.1
5,212,221	-		GFF5216	0.75	-0.1
5,212,224	+		GFF5216	0.75	+1.2
5,212,231	+		GFF5216	0.76	-0.1
5,212,231	+		GFF5216	0.76	-0.8
5,212,231	+		GFF5216	0.76	+1.1
5,212,239	-		GFF5216	0.76	+0.3
5,212,270	+		GFF5216	0.78	+0.2
5,212,298	+		GFF5216	0.80	-1.0
5,212,298	+		GFF5216	0.80	-1.6
5,212,311	-		GFF5216	0.81	+0.2
5,212,339	-		GFF5216	0.83	-0.5
5,212,339	-		GFF5216	0.83	+0.5
5,212,398	+		GFF5216	0.88	+1.4
5,212,409	+		GFF5216	0.88	-1.7
5,212,414	+		GFF5216	0.89	+0.4
5,212,414	+		GFF5216	0.89	-1.3
5,212,416	-		GFF5216	0.89	-0.9
5,212,422	-		GFF5216	0.89	-0.5
5,212,422	-		GFF5216	0.89	+0.0
5,212,432	+				+0.3
5,212,458	-				-0.9
5,212,459	+				+1.0
5,212,460	+				+0.1
5,212,498	+				+1.1
5,212,505	+				-0.5
5,212,518	+				+0.6
5,212,551	-				+0.3
5,212,559	+				+0.9
5,212,617	+		GFF5217	0.11	+0.5
5,212,617	+		GFF5217	0.11	+0.3
5,212,625	-		GFF5217	0.13	+1.6
5,212,630	-		GFF5217	0.15	-1.6
5,212,636	+		GFF5217	0.16	-1.1
5,212,644	-		GFF5217	0.18	-1.2
5,212,671	-		GFF5217	0.25	-0.5
5,212,728	-		GFF5217	0.38	-0.1
5,212,750	-		GFF5217	0.44	-0.4
5,212,789	-		GFF5217	0.53	-0.6
5,212,789	-		GFF5217	0.53	+0.5
5,212,795	+		GFF5217	0.55	-0.0
5,212,796	-		GFF5217	0.55	-1.5
5,212,827	+		GFF5217	0.63	-1.1
5,212,849	-		GFF5217	0.68	+1.4
5,212,849	-		GFF5217	0.68	-0.6
5,212,899	-		GFF5217	0.80	+0.9
5,212,911	+		GFF5217	0.83	+0.0
5,212,911	+		GFF5217	0.83	+0.4
5,212,919	-		GFF5217	0.85	+0.3
5,212,919	-		GFF5217	0.85	+0.5
5,212,919	-		GFF5217	0.85	+0.8
5,212,945	+				-0.4
5,212,946	-				+0.5
5,212,948	+				+1.2
5,212,953	+				-0.2
5,212,955	-				+0.2
5,212,956	-				-0.6
5,212,958	+				+1.1
5,212,958	-				+0.3
5,212,958	-				-1.3
5,212,961	+				+0.9
5,212,967	+				-0.1
5,212,990	+				+0.6
5,212,990	+				-0.8
5,212,990	+				+1.0
5,212,993	-				-0.4
5,212,998	-				-1.2
5,213,016	+		GFF5218	0.14	+1.1
5,213,016	+		GFF5218	0.14	+0.0
5,213,016	+		GFF5218	0.14	-0.1
5,213,024	-		GFF5218	0.17	-0.1
5,213,024	-		GFF5218	0.17	+0.5
5,213,024	-		GFF5218	0.17	-0.5
5,213,024	-		GFF5218	0.17	+1.0
5,213,024	-		GFF5218	0.17	+0.1
5,213,024	-		GFF5218	0.17	-1.0
5,213,024	-		GFF5218	0.17	-0.5
5,213,034	-		GFF5218	0.21	-0.5
5,213,041	+		GFF5218	0.23	-0.8
5,213,041	+		GFF5218	0.23	+0.7
5,213,084	+		GFF5218	0.39	-0.5
5,213,131	-		GFF5218	0.56	+0.5
5,213,146	+		GFF5218	0.61	+0.4
5,213,170	-		GFF5218	0.70	-0.6
5,213,174	+		GFF5218	0.71	+0.3
5,213,174	+		GFF5218	0.71	-0.1
5,213,174	+		GFF5218	0.71	+1.2
5,213,174	+		GFF5218	0.71	-1.8
5,213,174	+		GFF5218	0.71	-0.7
5,213,174	+		GFF5218	0.71	+0.4
5,213,182	-		GFF5218	0.74	-0.6
5,213,182	-		GFF5218	0.74	-1.1
5,213,182	-		GFF5218	0.74	-2.3
5,213,182	-		GFF5218	0.74	+0.2
5,213,193	-		GFF5218	0.78	-0.7
5,213,202	+		GFF5218	0.82	-0.1
5,213,216	-		GFF5218	0.87	+0.8
5,213,252	+				+1.0
5,213,262	+				-2.1
5,213,262	+				-1.0
5,213,265	-				-1.3
5,213,270	-				+0.0
5,213,270	-				-0.3
5,213,270	-				+0.1
5,213,280	-		GFF5219	0.12	+0.4
5,213,281	+		GFF5219	0.12	-0.6
5,213,294	-		GFF5219	0.17	-0.5
5,213,336	-		GFF5219	0.33	-1.6
5,213,343	+		GFF5219	0.35	+1.0
5,213,369	+		GFF5219	0.45	-1.2
5,213,374	+		GFF5219	0.47	-0.8
5,213,374	+		GFF5219	0.47	+0.1
5,213,374	+		GFF5219	0.47	-1.4
5,213,379	+		GFF5219	0.49	-0.5
5,213,382	-		GFF5219	0.50	-0.5
5,213,432	-		GFF5219	0.69	-0.5
5,213,485	-		GFF5219	0.88	+0.4
5,213,487	+		GFF5219	0.89	-0.5
5,213,497	+				+0.3
5,213,497	+				-1.3
5,213,537	+				+1.0
5,213,547	+				+0.1
5,213,547	+				+0.4
5,213,558	+				+0.6
5,213,558	+				+0.1
5,213,566	-				-2.5
5,213,566	-				+1.4