Strain Fitness in Sphingobium sp. HT1-2 around GFF5214

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
5,209,474	+		GFF5212	0.84	+0.2
5,209,482	-		GFF5212	0.84	+1.2
5,209,517	+		GFF5212	0.87	-1.3
5,209,517	+		GFF5212	0.87	-0.9
5,209,532	-		GFF5212	0.88	-0.0
5,209,534	+		GFF5212	0.89	-1.3
5,209,542	+		GFF5212	0.89	-2.2
5,209,542	+		GFF5212	0.89	+1.1
5,209,550	-				-1.5
5,209,550	-				-0.8
5,209,550	-				-0.3
5,209,570	+				-1.3
5,209,570	+				-0.1
5,209,570	+				-0.0
5,209,572	+				-0.3
5,209,572	+				-2.0
5,209,578	-				-0.2
5,209,578	-				-2.4
5,209,580	-				+0.1
5,209,580	-				-1.0
5,209,588	-				-2.6
5,209,592	+				-0.3
5,209,592	+				-2.7
5,209,600	-				-2.6
5,209,624	-				+1.2
5,209,671	-				-0.1
5,209,701	-				+0.3
5,209,712	-				-0.4
5,209,714	-				-0.4
5,209,722	+				-0.7
5,209,747	-		GFF5213	0.11	-0.5
5,209,753	+		GFF5213	0.11	-0.6
5,209,753	-		GFF5213	0.11	-1.5
5,209,755	+		GFF5213	0.12	-1.3
5,209,761	-		GFF5213	0.12	-0.3
5,209,803	+		GFF5213	0.18	+0.4
5,209,840	-		GFF5213	0.23	-0.5
5,209,842	-		GFF5213	0.23	-1.1
5,209,843	-		GFF5213	0.23	+1.0
5,209,850	-		GFF5213	0.24	-0.2
5,209,894	+		GFF5213	0.30	+0.3
5,209,904	+		GFF5213	0.31	-0.2
5,209,904	+		GFF5213	0.31	-0.6
5,209,912	-		GFF5213	0.32	+0.0
5,209,912	-		GFF5213	0.32	+1.0
5,209,912	-		GFF5213	0.32	+1.3
5,209,912	-		GFF5213	0.32	-1.6
5,209,932	-		GFF5213	0.34	-0.5
5,209,951	+		GFF5213	0.37	+1.9
5,209,998	+		GFF5213	0.43	-0.2
5,209,998	+		GFF5213	0.43	+0.6
5,210,006	-		GFF5213	0.44	-0.7
5,210,006	-		GFF5213	0.44	+0.7
5,210,015	+		GFF5213	0.45	+1.2
5,210,023	-		GFF5213	0.46	-0.8
5,210,083	+		GFF5213	0.54	-0.1
5,210,086	+		GFF5213	0.54	+0.0
5,210,096	-		GFF5213	0.56	+0.0
5,210,113	+		GFF5213	0.58	+1.0
5,210,143	-		GFF5213	0.62	-0.0
5,210,153	+		GFF5213	0.63	+0.2
5,210,153	+		GFF5213	0.63	-1.0
5,210,161	-		GFF5213	0.64	+0.7
5,210,161	-		GFF5213	0.64	-0.2
5,210,203	+		GFF5213	0.70	-0.5
5,210,231	-		GFF5213	0.73	+0.8
5,210,231	-		GFF5213	0.73	+0.2
5,210,233	+		GFF5213	0.73	-1.6
5,210,241	-		GFF5213	0.74	-0.4
5,210,241	-		GFF5213	0.74	+0.2
5,210,252	-		GFF5213	0.76	+0.1
5,210,259	+		GFF5213	0.77	-2.5
5,210,283	-		GFF5213	0.80	-0.9
5,210,283	-		GFF5213	0.80	+1.2
5,210,306	+		GFF5213	0.83	-0.9
5,210,318	+		GFF5213	0.84	+0.9
5,210,318	+		GFF5213	0.84	+0.6
5,210,318	+		GFF5213	0.84	+0.5
5,210,326	-		GFF5213	0.85	+0.4
5,210,332	-		GFF5213	0.86	+1.3
5,210,343	-		GFF5213	0.88	+1.6
5,210,408	+				-0.5
5,210,432	+				-1.6
5,210,434	-				+0.1
5,210,435	-				-0.6
5,210,438	+				-0.6
5,210,453	+				-0.6
5,210,565	+		GFF5214	0.24	+0.9
5,210,592	+		GFF5214	0.30	-0.6
5,210,667	-		GFF5214	0.48	-0.1
5,210,669	-		GFF5214	0.48	-1.7
5,210,752	-		GFF5214	0.68	+0.1
5,210,757	+		GFF5214	0.69	+1.0
5,210,772	+		GFF5214	0.73	-1.0
5,210,780	-		GFF5214	0.75	+0.7
5,210,875	+				+1.0
5,210,880	+				+0.1
5,210,917	-				-0.5
5,210,938	+				+0.1
5,210,938	+				-0.3
5,210,943	+				-1.7
5,210,943	+				+0.8
5,210,946	-				-0.7
5,210,946	-				+0.3
5,210,946	-				+0.6
5,210,946	-				-1.1
5,210,951	-				+0.1
5,211,016	+				+0.1
5,211,030	-				-0.5
5,211,041	+				-0.0
5,211,056	+				-1.7
5,211,056	+				-0.3
5,211,095	+		GFF5215	0.37	+0.3
5,211,103	-		GFF5215	0.43	-0.0
5,211,141	+		GFF5215	0.75	-0.0
5,211,142	-		GFF5215	0.76	-1.6
5,211,165	+				+0.4
5,211,173	-				-0.8
5,211,183	-				-1.7
5,211,196	+				-0.3
5,211,206	-				-1.1
5,211,208	+				+0.2
5,211,213	+				+0.9
5,211,213	+				+0.4
5,211,216	-				-1.7
5,211,221	-				-0.8
5,211,221	-				-0.8
5,211,221	-				-1.2
5,211,235	+				+0.3
5,211,245	-				-1.3
5,211,261	+				+0.5
5,211,298	-				-1.4
5,211,306	-		GFF5216	0.10	-0.4
5,211,308	+		GFF5216	0.10	-0.0
5,211,313	+		GFF5216	0.11	+0.4
5,211,316	-		GFF5216	0.11	+1.0
5,211,316	-		GFF5216	0.11	-0.1
5,211,316	-		GFF5216	0.11	+0.5
5,211,316	-		GFF5216	0.11	+0.4
5,211,316	-		GFF5216	0.11	+0.5
5,211,355	+		GFF5216	0.14	+0.7
5,211,431	+		GFF5216	0.19	-1.1
5,211,431	+		GFF5216	0.19	-1.5
5,211,437	+		GFF5216	0.20	+0.2
5,211,439	-		GFF5216	0.20	+0.3
5,211,439	-		GFF5216	0.20	-1.9
5,211,439	-		GFF5216	0.20	-0.1
5,211,445	+		GFF5216	0.20	-0.4
5,211,463	+		GFF5216	0.21	+0.5
5,211,471	-		GFF5216	0.22	-1.0
5,211,507	+		GFF5216	0.24	+0.7
5,211,515	-		GFF5216	0.25	-1.7
5,211,530	-		GFF5216	0.26	-1.2
5,211,562	+		GFF5216	0.28	-2.2
5,211,562	+		GFF5216	0.28	+1.0
5,211,573	+		GFF5216	0.29	+0.2
5,211,573	+		GFF5216	0.29	-1.1
5,211,581	-		GFF5216	0.30	+0.0
5,211,604	+		GFF5216	0.31	-0.6
5,211,610	+		GFF5216	0.32	-0.6
5,211,612	-		GFF5216	0.32	+0.2
5,211,618	-		GFF5216	0.32	+0.7
5,211,618	-		GFF5216	0.32	+1.0
5,211,628	+		GFF5216	0.33	-1.6
5,211,628	+		GFF5216	0.33	-0.2
5,211,643	+		GFF5216	0.34	+0.5
5,211,644	-		GFF5216	0.34	-2.5
5,211,644	-		GFF5216	0.34	-0.3
5,211,646	+		GFF5216	0.34	-0.1
5,211,654	-		GFF5216	0.35	-1.6
5,211,654	-		GFF5216	0.35	-0.2
5,211,654	-		GFF5216	0.35	-0.4
5,211,661	+		GFF5216	0.35	-0.1
5,211,668	+		GFF5216	0.36	-0.3
5,211,673	+		GFF5216	0.36	-0.1
5,211,694	+		GFF5216	0.38	+0.6
5,211,696	+		GFF5216	0.38	-1.7
5,211,702	-		GFF5216	0.38	-2.1
5,211,704	-		GFF5216	0.38	-0.5
5,211,704	-		GFF5216	0.38	-0.7
5,211,712	-		GFF5216	0.39	-0.2
5,211,744	+		GFF5216	0.41	-0.1
5,211,744	+		GFF5216	0.41	-0.3
5,211,751	-		GFF5216	0.42	-0.3
5,211,752	-		GFF5216	0.42	+0.2
5,211,760	-		GFF5216	0.42	-2.1
5,211,761	+		GFF5216	0.42	+0.6
5,211,762	-		GFF5216	0.43	-0.9
5,211,771	+		GFF5216	0.43	-1.4
5,211,771	+		GFF5216	0.43	+0.5
5,211,779	-		GFF5216	0.44	+0.0
5,211,779	-		GFF5216	0.44	-0.1
5,211,779	-		GFF5216	0.44	+0.6
5,211,784	+		GFF5216	0.44	-1.1
5,211,784	-		GFF5216	0.44	-1.0
5,211,853	-		GFF5216	0.49	+0.6
5,211,854	-		GFF5216	0.49	-0.7
5,211,859	+		GFF5216	0.49	-1.4
5,211,867	-		GFF5216	0.50	+0.1
5,211,872	-		GFF5216	0.50	+0.9