Strain Fitness in Sphingobium sp. HT1-2 around GFF5179

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
5,171,859	+		GFF5178	0.38	-1.5
5,171,859	+		GFF5178	0.38	-1.3
5,171,867	-		GFF5178	0.38	+0.8
5,171,867	-		GFF5178	0.38	-1.0
5,171,867	-		GFF5178	0.38	+0.0
5,171,867	-		GFF5178	0.38	-1.3
5,171,873	+		GFF5178	0.39	-0.7
5,171,890	+		GFF5178	0.40	+1.0
5,171,914	+		GFF5178	0.42	+0.1
5,171,914	+		GFF5178	0.42	-0.9
5,171,930	+		GFF5178	0.43	-0.7
5,171,930	+		GFF5178	0.43	-0.9
5,171,935	+		GFF5178	0.43	-0.9
5,171,935	+		GFF5178	0.43	-1.2
5,171,938	-		GFF5178	0.44	-0.2
5,171,953	+		GFF5178	0.45	-2.3
5,171,982	-		GFF5178	0.47	-1.4
5,171,992	-		GFF5178	0.48	+0.8
5,172,002	+		GFF5178	0.48	-1.1
5,172,002	+		GFF5178	0.48	-0.3
5,172,002	+		GFF5178	0.48	+0.3
5,172,010	-		GFF5178	0.49	+0.5
5,172,010	-		GFF5178	0.49	-2.8
5,172,010	-		GFF5178	0.49	-1.3
5,172,010	-		GFF5178	0.49	-0.4
5,172,015	+		GFF5178	0.49	-1.0
5,172,020	+		GFF5178	0.50	-0.5
5,172,023	-		GFF5178	0.50	-0.4
5,172,028	-		GFF5178	0.50	-0.6
5,172,028	-		GFF5178	0.50	-0.8
5,172,028	-		GFF5178	0.50	-1.2
5,172,028	-		GFF5178	0.50	+1.1
5,172,030	+		GFF5178	0.50	-2.5
5,172,030	+		GFF5178	0.50	+0.2
5,172,038	+		GFF5178	0.51	+0.2
5,172,038	-		GFF5178	0.51	-0.1
5,172,048	+		GFF5178	0.52	-2.0
5,172,059	+		GFF5178	0.53	-2.1
5,172,067	-		GFF5178	0.53	+1.0
5,172,067	-		GFF5178	0.53	+0.2
5,172,082	+		GFF5178	0.54	-0.1
5,172,082	+		GFF5178	0.54	-0.7
5,172,082	+		GFF5178	0.54	-1.1
5,172,090	-		GFF5178	0.55	-1.1
5,172,090	-		GFF5178	0.55	-1.0
5,172,099	-		GFF5178	0.56	-0.6
5,172,099	-		GFF5178	0.56	-2.1
5,172,108	+		GFF5178	0.56	-1.0
5,172,108	+		GFF5178	0.56	-0.2
5,172,116	-		GFF5178	0.57	-1.6
5,172,173	+		GFF5178	0.61	-0.8
5,172,173	+		GFF5178	0.61	+0.7
5,172,173	+		GFF5178	0.61	-0.4
5,172,173	+		GFF5178	0.61	-0.3
5,172,183	+		GFF5178	0.62	-0.0
5,172,192	+		GFF5178	0.63	-1.7
5,172,200	-		GFF5178	0.63	+0.3
5,172,228	+		GFF5178	0.65	-0.1
5,172,228	+		GFF5178	0.65	-1.0
5,172,285	+		GFF5178	0.70	-2.3
5,172,285	+		GFF5178	0.70	-1.8
5,172,286	+		GFF5178	0.70	-0.8
5,172,293	-		GFF5178	0.70	+0.4
5,172,294	-		GFF5178	0.70	-1.2
5,172,298	-		GFF5178	0.71	+0.4
5,172,328	+		GFF5178	0.73	+0.4
5,172,330	+		GFF5178	0.73	-1.0
5,172,330	+		GFF5178	0.73	-1.0
5,172,338	-		GFF5178	0.74	-0.2
5,172,342	+		GFF5178	0.74	-2.0
5,172,344	+		GFF5178	0.74	-0.4
5,172,352	-		GFF5178	0.75	-2.7
5,172,352	-		GFF5178	0.75	-1.5
5,172,352	-		GFF5178	0.75	+0.4
5,172,379	-		GFF5178	0.77	+0.8
5,172,388	-		GFF5178	0.77	-0.4
5,172,389	-		GFF5178	0.78	-0.1
5,172,389	-		GFF5178	0.78	-1.0
5,172,400	+		GFF5178	0.78	-0.1
5,172,413	-		GFF5178	0.79	+0.2
5,172,420	-		GFF5178	0.80	+0.1
5,172,454	-		GFF5178	0.82	-0.2
5,172,458	-		GFF5178	0.83	+1.6
5,172,498	+		GFF5178	0.86	-1.6
5,172,499	-		GFF5178	0.86	-1.8
5,172,507	-		GFF5178	0.86	-1.3
5,172,524	+		GFF5178	0.88	-0.7
5,172,534	+		GFF5178	0.88	-1.0
5,172,542	-		GFF5178	0.89	+0.7
5,172,552	+		GFF5178	0.90	+0.5
5,172,552	+		GFF5178	0.90	-0.1
5,172,552	+		GFF5178	0.90	-0.4
5,172,582	+				-0.9
5,172,583	+				+0.0
5,172,583	+				+1.1
5,172,584	+				-0.9
5,172,584	+				-0.3
5,172,584	+				+1.6
5,172,584	+				+0.8
5,172,584	+				+0.8
5,172,589	+				-0.3
5,172,591	-				+0.0
5,172,591	-				-0.6
5,172,592	-				+0.3
5,172,592	-				+0.7
5,172,592	-				-2.5
5,172,592	-				-0.1
5,172,592	-				+0.3
5,172,592	-				-1.6
5,172,595	+				-0.1
5,172,596	+				-2.8
5,172,597	-				-0.1
5,172,613	-				-1.1
5,172,622	+				+0.0
5,172,630	-				+2.1
5,172,630	-				-0.1
5,172,630	-				+0.6
5,172,640	+				-3.4
5,172,640	+				-1.2
5,172,648	-				-0.1
5,172,648	-				-1.2
5,172,664	+				-1.0
5,172,664	+				-0.1
5,172,669	+				-0.3
5,172,669	+				+0.3
5,172,677	-				-0.7
5,172,677	-				-0.3
5,172,677	-				-1.1
5,172,706	+				-0.1
5,172,706	-				-1.1
5,172,714	-				-0.8
5,172,717	+				-0.6
5,172,717	-				-1.7
5,172,725	+				-1.1
5,172,725	-				+0.6
5,172,726	-				-1.5
5,172,726	-				-0.7
5,172,760	+				-1.8
5,172,806	+				-0.1
5,172,806	+				-0.4
5,172,806	+				-1.0
5,172,807	+				-0.2
5,172,807	+				-1.2
5,172,814	+				-0.8
5,172,815	-				-1.2
5,172,815	-				-0.1
5,172,815	-				-2.2
5,172,815	-				-1.6
5,172,859	-				+0.3
5,172,884	+				+0.8
5,172,884	+				-0.2
5,172,889	+				-0.3
5,172,893	-				-0.1
5,172,897	-				-1.6
5,172,897	-				+1.4
5,172,901	+				-0.4
5,172,926	-				-1.7
5,172,934	+				-0.6
5,172,936	+				-0.0
5,172,936	+				+0.6
5,172,936	+				-0.9
5,172,936	+				-0.7
5,172,936	+				-0.6
5,172,936	-				+0.0
5,172,944	-				+0.3
5,172,944	-				-2.6
5,172,944	-				-0.5
5,172,966	+				-0.1
5,172,973	+				-0.1
5,172,976	+				-1.2
5,172,976	+				+0.4
5,172,976	+				-0.4
5,172,984	-				+0.3
5,173,002	-				-0.3
5,173,020	-				+0.2
5,173,025	+				-1.4
5,173,030	+				-1.6
5,173,038	-		GFF5179	0.10	-0.8
5,173,038	-		GFF5179	0.10	+0.2
5,173,038	-		GFF5179	0.10	-1.0
5,173,056	-		GFF5179	0.11	+0.6
5,173,060	-		GFF5179	0.11	-0.6
5,173,067	+		GFF5179	0.11	-0.5
5,173,067	+		GFF5179	0.11	-2.4
5,173,075	-		GFF5179	0.12	-0.8
5,173,079	+		GFF5179	0.12	-1.9
5,173,100	+		GFF5179	0.13	+0.5
5,173,110	-		GFF5179	0.13	-0.0
5,173,116	-		GFF5179	0.14	-0.5
5,173,136	+		GFF5179	0.15	-2.0
5,173,144	-		GFF5179	0.15	-1.7
5,173,144	-		GFF5179	0.15	-0.7
5,173,144	-		GFF5179	0.15	-1.3
5,173,164	-		GFF5179	0.16	-0.9
5,173,218	+		GFF5179	0.18	+0.5
5,173,218	+		GFF5179	0.18	+0.4
5,173,218	+		GFF5179	0.18	-0.1
5,173,218	+		GFF5179	0.18	-0.3
5,173,218	+		GFF5179	0.18	-2.1
5,173,218	+		GFF5179	0.18	-1.3
5,173,218	+		GFF5179	0.18	-0.3
5,173,218	+		GFF5179	0.18	-1.2
5,173,218	+		GFF5179	0.18	-1.0
5,173,221	-		GFF5179	0.19	-1.2
5,173,226	-		GFF5179	0.19	-2.2
5,173,226	-		GFF5179	0.19	+0.1
5,173,226	-		GFF5179	0.19	-2.1
5,173,228	+		GFF5179	0.19	-0.2
5,173,228	+		GFF5179	0.19	-0.5
5,173,236	+		GFF5179	0.19	-1.9
5,173,238	+		GFF5179	0.19	-1.8
5,173,238	+		GFF5179	0.19	-3.2
5,173,238	+		GFF5179	0.19	-0.7
5,173,238	+		GFF5179	0.19	+0.7
5,173,244	-		GFF5179	0.20	-2.9
5,173,246	-		GFF5179	0.20	+0.1
5,173,246	-		GFF5179	0.20	+0.6
5,173,246	-		GFF5179	0.20	-3.1
5,173,295	+		GFF5179	0.22	+0.1
5,173,332	+		GFF5179	0.24	+0.4
5,173,340	+		GFF5179	0.24	-1.6
5,173,340	+		GFF5179	0.24	-0.8
5,173,371	+		GFF5179	0.25	-0.2
5,173,378	+		GFF5179	0.26	-0.7
5,173,379	-		GFF5179	0.26	-1.0
5,173,399	+		GFF5179	0.27	-0.9
5,173,399	+		GFF5179	0.27	+0.1
5,173,404	+		GFF5179	0.27	-1.1
5,173,404	+		GFF5179	0.27	-1.2
5,173,407	-		GFF5179	0.27	-0.2
5,173,412	-		GFF5179	0.27	-0.7
5,173,421	-		GFF5179	0.28	+0.1
5,173,445	+		GFF5179	0.29	-1.6
5,173,450	+		GFF5179	0.29	+0.4
5,173,450	+		GFF5179	0.29	-0.7
5,173,450	+		GFF5179	0.29	-0.9
5,173,453	-		GFF5179	0.29	+0.8
5,173,455	+		GFF5179	0.29	+0.0
5,173,458	-		GFF5179	0.29	-0.7
5,173,463	-		GFF5179	0.30	+0.3
5,173,490	+		GFF5179	0.31	-0.1
5,173,505	-		GFF5179	0.32	-0.6
5,173,505	-		GFF5179	0.32	-1.3
5,173,511	-		GFF5179	0.32	-1.2
5,173,512	-		GFF5179	0.32	-1.1
5,173,512	-		GFF5179	0.32	-0.5
5,173,514	+		GFF5179	0.32	-0.5
5,173,553	+		GFF5179	0.34	-1.2
5,173,557	+		GFF5179	0.34	-0.2
5,173,558	+		GFF5179	0.34	-2.0
5,173,558	+		GFF5179	0.34	+0.7
5,173,558	+		GFF5179	0.34	-0.9
5,173,583	-		GFF5179	0.35	-0.2
5,173,610	+		GFF5179	0.36	+0.1
5,173,610	+		GFF5179	0.36	+1.1
5,173,610	+		GFF5179	0.36	-0.9
5,173,618	-		GFF5179	0.37	-1.3
5,173,618	-		GFF5179	0.37	-1.5
5,173,618	-		GFF5179	0.37	-0.2
5,173,664	+		GFF5179	0.39	-0.0
5,173,672	-		GFF5179	0.39	-0.5
5,173,685	+		GFF5179	0.40	+0.2
5,173,688	-		GFF5179	0.40	-2.3
5,173,695	-		GFF5179	0.40	-3.2
5,173,695	-		GFF5179	0.40	-2.9
5,173,739	-		GFF5179	0.42	-1.2
5,173,747	+		GFF5179	0.43	-0.5
5,173,749	+		GFF5179	0.43	-0.2
5,173,757	-		GFF5179	0.43	-1.3
5,173,798	-		GFF5179	0.45	-0.1
5,173,803	-		GFF5179	0.45	-1.3
5,173,817	+		GFF5179	0.46	-1.5
5,173,817	+		GFF5179	0.46	-2.2
5,173,825	-		GFF5179	0.46	-1.5
5,173,827	+		GFF5179	0.46	+0.5
5,173,827	+		GFF5179	0.46	-0.9
5,173,827	+		GFF5179	0.46	-0.7
5,173,827	+		GFF5179	0.46	-0.2
5,173,827	+		GFF5179	0.46	+0.8
5,173,827	+		GFF5179	0.46	-0.3
5,173,835	-		GFF5179	0.47	-1.8
5,173,908	+		GFF5179	0.50	-0.8
5,173,910	+		GFF5179	0.50	-0.6
5,173,921	+		GFF5179	0.51	-0.5
5,173,924	+		GFF5179	0.51	+0.0
5,173,929	+		GFF5179	0.51	-1.5
5,173,930	+		GFF5179	0.51	-1.6
5,173,930	+		GFF5179	0.51	-1.2
5,173,930	+		GFF5179	0.51	-0.6
5,173,931	+		GFF5179	0.51	-2.4
5,173,931	+		GFF5179	0.51	+0.7
5,173,938	-		GFF5179	0.51	-2.8
5,173,938	-		GFF5179	0.51	-0.8
5,173,938	-		GFF5179	0.51	-2.4
5,173,938	-		GFF5179	0.51	-1.6
5,173,938	-		GFF5179	0.51	+0.1
5,173,938	-		GFF5179	0.51	-0.7
5,173,943	+		GFF5179	0.52	-0.6
5,173,961	-		GFF5179	0.52	+0.4
5,174,008	+		GFF5179	0.55	-0.7
5,174,025	-		GFF5179	0.55	-0.7
5,174,098	+		GFF5179	0.59	+1.5
5,174,098	+		GFF5179	0.59	-0.5
5,174,098	-		GFF5179	0.59	-0.6
5,174,098	-		GFF5179	0.59	-2.7
5,174,108	+		GFF5179	0.59	+0.2
5,174,116	-		GFF5179	0.59	-0.6
5,174,119	+		GFF5179	0.60	+0.6
5,174,119	+		GFF5179	0.60	-1.5
5,174,127	-		GFF5179	0.60	-1.0
5,174,129	+		GFF5179	0.60	-1.1
5,174,133	-		GFF5179	0.60	-0.9
5,174,161	-		GFF5179	0.61	-0.9
5,174,164	+		GFF5179	0.62	-1.4
5,174,172	-		GFF5179	0.62	-0.5
5,174,192	-		GFF5179	0.63	-2.2
5,174,213	-		GFF5179	0.64	-0.5
5,174,223	-		GFF5179	0.64	+0.8
5,174,223	-		GFF5179	0.64	+0.7
5,174,229	-		GFF5179	0.65	-0.4
5,174,231	-		GFF5179	0.65	-0.6
5,174,234	+		GFF5179	0.65	+0.3
5,174,234	+		GFF5179	0.65	+0.3
5,174,247	-		GFF5179	0.65	-1.5
5,174,265	-		GFF5179	0.66	-1.0
5,174,265	-		GFF5179	0.66	+0.5
5,174,276	+		GFF5179	0.67	+0.8
5,174,276	+		GFF5179	0.67	-1.4
5,174,276	+		GFF5179	0.67	-1.3
5,174,276	+		GFF5179	0.67	+0.6
5,174,276	+		GFF5179	0.67	-0.3
5,174,295	+		GFF5179	0.68	+0.2
5,174,310	-		GFF5179	0.68	-0.8
5,174,316	-		GFF5179	0.69	+0.3
5,174,332	+		GFF5179	0.69	-1.2
5,174,350	+		GFF5179	0.70	-2.2
5,174,350	+		GFF5179	0.70	-1.3
5,174,350	+		GFF5179	0.70	-1.4
5,174,350	+		GFF5179	0.70	-1.9
5,174,350	-		GFF5179	0.70	-2.0
5,174,358	-		GFF5179	0.71	-2.1
5,174,358	-		GFF5179	0.71	-1.4
5,174,377	+		GFF5179	0.71	-0.5
5,174,383	+		GFF5179	0.72	+0.1
5,174,406	-		GFF5179	0.73	-0.7
5,174,407	-		GFF5179	0.73	-1.0
5,174,454	+		GFF5179	0.75	-2.5
5,174,455	-		GFF5179	0.75	-1.4
5,174,463	+		GFF5179	0.75	-0.4
5,174,464	+		GFF5179	0.75	+0.8
5,174,465	+		GFF5179	0.75	-1.7
5,174,465	+		GFF5179	0.75	+0.7
5,174,471	-		GFF5179	0.76	-1.8
5,174,473	-		GFF5179	0.76	-2.5
5,174,473	-		GFF5179	0.76	-0.5
5,174,508	+		GFF5179	0.77	-0.3
5,174,527	-		GFF5179	0.78	+0.8
5,174,550	-		GFF5179	0.79	-0.2
5,174,586	-		GFF5179	0.81	-1.3
5,174,590	+		GFF5179	0.81	-1.4
5,174,602	+		GFF5179	0.82	-0.3
5,174,602	+		GFF5179	0.82	-0.8
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5,174,610	-		GFF5179	0.82	-2.1
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5,174,697	+		GFF5179	0.86	-1.2
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5,174,786	+				-0.7
5,174,800	-				-2.0
5,174,830	+				-0.2
5,174,838	-				-2.5
5,174,838	-				+1.0
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5,174,841	-				-0.3
5,174,848	-				-1.3
5,174,877	-				-2.7
5,174,877	-				-0.4
5,174,877	-				-0.1
5,174,877	-				-0.1
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5,174,896	-				-0.3
5,174,899	+				-1.2
5,174,903	-				-0.1
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5,174,915	+				-0.4
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5,174,932	-				-0.6
5,174,933	-				-0.9
5,174,934	-				-0.3
5,174,968	+				-0.4
5,174,976	-				-2.1
5,174,980	-				+0.1
5,174,986	-				+0.1
5,174,996	+				-0.6
5,174,996	+				+1.5
5,174,996	+				-1.2
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5,175,004	-				-0.8
5,175,004	-				+0.3
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5,175,044	-				+0.7
5,175,047	-				-0.9
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5,175,299	+		GFF5180	0.49	-1.3
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5,175,302	-		GFF5180	0.50	-2.1
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5,175,348	+		GFF5180	0.58	-1.0
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5,175,354	-		GFF5180	0.59	-0.0
5,175,356	-		GFF5180	0.59	-1.1
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5,175,356	-		GFF5180	0.59	+0.1
5,175,356	-		GFF5180	0.59	-0.7
5,175,365	-		GFF5180	0.61	-2.8
5,175,397	-		GFF5180	0.66	-1.0
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5,175,482	+		GFF5180	0.80	-1.7
5,175,497	+		GFF5180	0.83	-1.1
5,175,512	+		GFF5180	0.85	-2.8
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5,175,541	+				-0.8
5,175,549	+				-0.1
5,175,557	-				+0.3
5,175,558	-				-0.7
5,175,563	+				+1.3
5,175,569	-				-0.3
5,175,571	-				-0.8
5,175,571	-				+0.2
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5,175,588	+				-1.1
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5,175,598	+				+1.0
5,175,598	+				+0.1
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5,175,603	-				+0.0
5,175,624	-				-1.0
5,175,644	+				-2.3
5,175,646	-				+0.5
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5,175,652	-				-0.8
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5,175,656	+				+0.5
5,175,656	+				-0.1
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5,175,666	+				-1.0
5,175,666	+				-1.0
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5,175,674	+				-0.6
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5,175,708	+				+0.6
5,175,716	-				-1.2
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5,175,725	+				+0.1
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5,175,789	+		GFF5181	0.41	-1.9
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5,175,884	-				+0.3
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5,175,959	+				-0.7
5,175,959	+				+0.3
5,175,959	+				+0.6
5,175,959	+				-0.1
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5,175,959	+				+0.9
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5,175,959	+				-1.1
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5,175,967	-				-0.9
5,175,967	-				-0.2
5,175,967	-				-0.2
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5,175,967	-				-1.2
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5,175,996	+		GFF5182	0.17	+0.6