Strain Fitness in Sphingobium sp. HT1-2 around GFF5146

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
5,138,509	+		GFF5144	0.80	+0.9
5,138,509	+		GFF5144	0.80	-0.8
5,138,514	+		GFF5144	0.80	+0.6
5,138,517	-		GFF5144	0.81	-0.5
5,138,519	+		GFF5144	0.81	-0.3
5,138,519	+		GFF5144	0.81	+0.1
5,138,519	+		GFF5144	0.81	-0.1
5,138,519	+		GFF5144	0.81	+0.3
5,138,522	-		GFF5144	0.81	-0.3
5,138,524	-		GFF5144	0.81	+0.5
5,138,530	+		GFF5144	0.82	+0.9
5,138,534	-		GFF5144	0.83	+0.5
5,138,540	+		GFF5144	0.83	-2.2
5,138,545	+		GFF5144	0.84	+1.0
5,138,553	-		GFF5144	0.85	-1.3
5,138,570	-		GFF5144	0.87	-1.0
5,138,586	-		GFF5144	0.89	-0.1
5,138,595	+		GFF5144	0.90	+1.5
5,138,620	+				+0.7
5,138,630	+				+0.7
5,138,637	+				+0.0
5,138,642	+				-0.8
5,138,650	-				-0.6
5,138,650	-				+0.0
5,138,659	+				+0.2
5,138,662	-				+0.2
5,138,667	-				-1.3
5,138,667	-				-0.5
5,138,669	+				-1.7
5,138,677	-				+0.2
5,138,704	+				-0.1
5,138,726	-				+1.5
5,138,730	+				+0.6
5,138,730	+				+0.2
5,138,736	-				-0.1
5,138,736	-				-0.7
5,138,738	-				+0.4
5,138,738	-				+1.1
5,138,738	-				-0.0
5,138,753	-				-0.1
5,138,780	+				-0.6
5,138,781	+				+0.3
5,138,822	-				-0.1
5,138,839	+				+0.2
5,138,839	+				-0.2
5,138,847	-				-1.7
5,138,850	+				-0.4
5,138,850	+				+0.0
5,138,858	-				-1.2
5,138,858	-				-0.5
5,138,863	-				-2.0
5,138,865	+				-0.7
5,138,869	+				+0.5
5,138,869	+				-0.7
5,138,873	-				-0.3
5,138,873	-				-1.2
5,138,873	-				+0.0
5,138,873	-				+0.3
5,138,873	-				-0.1
5,138,874	+				+0.1
5,138,894	-				-1.7
5,138,921	+				-0.3
5,138,929	-				+0.1
5,138,979	+		GFF5145	0.18	-0.5
5,138,979	+		GFF5145	0.18	-0.1
5,138,979	+		GFF5145	0.18	+0.1
5,139,024	+		GFF5145	0.30	+0.8
5,139,039	+		GFF5145	0.33	+0.4
5,139,039	+		GFF5145	0.33	-0.2
5,139,039	+		GFF5145	0.33	-0.1
5,139,047	-		GFF5145	0.35	-0.1
5,139,047	-		GFF5145	0.35	-0.1
5,139,102	-		GFF5145	0.49	+0.7
5,139,111	+		GFF5145	0.51	-0.3
5,139,111	+		GFF5145	0.51	+1.1
5,139,111	+		GFF5145	0.51	+0.9
5,139,111	+		GFF5145	0.51	+0.4
5,139,111	+		GFF5145	0.51	+0.4
5,139,111	+		GFF5145	0.51	+0.3
5,139,111	+		GFF5145	0.51	-0.1
5,139,111	+		GFF5145	0.51	+1.2
5,139,111	+		GFF5145	0.51	-1.4
5,139,117	-		GFF5145	0.53	-0.5
5,139,119	-		GFF5145	0.53	+0.6
5,139,119	-		GFF5145	0.53	-1.3
5,139,119	-		GFF5145	0.53	+0.4
5,139,119	-		GFF5145	0.53	-0.5
5,139,119	-		GFF5145	0.53	-0.1
5,139,119	-		GFF5145	0.53	-0.0
5,139,121	+		GFF5145	0.54	+0.4
5,139,126	+		GFF5145	0.55	-0.1
5,139,131	+		GFF5145	0.56	+1.3
5,139,161	+		GFF5145	0.64	-0.1
5,139,166	+		GFF5145	0.65	+1.3
5,139,180	+		GFF5145	0.68	-0.7
5,139,182	+		GFF5145	0.69	+0.0
5,139,182	+		GFF5145	0.69	-1.3
5,139,182	+		GFF5145	0.69	+0.6
5,139,189	-		GFF5145	0.71	-0.3
5,139,194	-		GFF5145	0.72	+0.0
5,139,203	+		GFF5145	0.74	-0.5
5,139,207	+		GFF5145	0.75	+0.9
5,139,211	-		GFF5145	0.76	+0.2
5,139,215	-		GFF5145	0.77	-0.8
5,139,217	+		GFF5145	0.78	+0.9
5,139,217	+		GFF5145	0.78	-0.3
5,139,217	+		GFF5145	0.78	-0.3
5,139,217	+		GFF5145	0.78	-1.4
5,139,217	+		GFF5145	0.78	-1.1
5,139,217	+		GFF5145	0.78	+0.8
5,139,225	-		GFF5145	0.80	+0.7
5,139,225	-		GFF5145	0.80	+1.8
5,139,225	-		GFF5145	0.80	-0.2
5,139,225	-		GFF5145	0.80	+1.2
5,139,225	-		GFF5145	0.80	-0.2
5,139,225	-		GFF5145	0.80	-0.8
5,139,225	-		GFF5145	0.80	+0.2
5,139,230	-		GFF5145	0.81	-1.6
5,139,249	+		GFF5145	0.86	-0.2
5,139,249	+		GFF5145	0.86	-1.1
5,139,249	+		GFF5145	0.86	-1.7
5,139,249	+		GFF5145	0.86	-0.3
5,139,249	+		GFF5145	0.86	-1.1
5,139,249	+		GFF5145	0.86	+0.7
5,139,257	-		GFF5145	0.88	-0.4
5,139,280	+				-2.2
5,139,284	-				+0.6
5,139,304	-				+1.0
5,139,306	-				-0.6
5,139,339	+				+0.6
5,139,364	-				-0.7
5,139,365	-				-1.3
5,139,413	+				+0.8
5,139,418	+				+1.3
5,139,418	+				-2.0
5,139,421	-				-0.3
5,139,421	-				+0.5
5,139,421	-				+0.1
5,139,423	+				-1.7
5,139,423	+				-0.4
5,139,426	-				-0.2
5,139,426	-				-0.3
5,139,438	-				+0.4
5,139,450	-				-0.3
5,139,451	-				+0.4
5,139,479	+				-0.8
5,139,490	+				-0.5
5,139,498	+				+0.8
5,139,504	+				-0.1
5,139,528	+				+0.3
5,139,552	-				-1.2
5,139,563	+				+0.4
5,139,582	-		GFF5146	0.10	+0.5
5,139,599	+		GFF5146	0.13	+0.6
5,139,599	+		GFF5146	0.13	-1.3
5,139,607	-		GFF5146	0.14	+0.6
5,139,607	-		GFF5146	0.14	-0.8
5,139,645	+		GFF5146	0.19	+0.5
5,139,656	+		GFF5146	0.20	-0.0
5,139,656	+		GFF5146	0.20	-0.3
5,139,656	+		GFF5146	0.20	+0.6
5,139,656	+		GFF5146	0.20	-1.1
5,139,656	+		GFF5146	0.20	+0.3
5,139,656	+		GFF5146	0.20	+1.2
5,139,656	+		GFF5146	0.20	-0.4
5,139,664	-		GFF5146	0.21	-0.7
5,139,664	-		GFF5146	0.21	+1.2
5,139,675	-		GFF5146	0.23	-1.1
5,139,677	+		GFF5146	0.23	-2.6
5,139,685	+		GFF5146	0.24	-1.5
5,139,691	-		GFF5146	0.25	+0.1
5,139,703	+		GFF5146	0.27	-1.1
5,139,703	-		GFF5146	0.27	-2.0
5,139,708	-		GFF5146	0.27	+0.1
5,139,708	-		GFF5146	0.27	-1.4
5,139,762	-		GFF5146	0.35	-0.7
5,139,769	-		GFF5146	0.36	+0.7
5,139,784	-		GFF5146	0.38	-2.4
5,139,784	-		GFF5146	0.38	-2.0
5,139,786	-		GFF5146	0.38	-0.4
5,139,799	-		GFF5146	0.40	+0.5
5,139,805	+		GFF5146	0.41	-0.1
5,139,828	-		GFF5146	0.44	-0.8
5,139,848	-		GFF5146	0.47	-0.0
5,139,850	+		GFF5146	0.47	-1.0
5,139,856	-		GFF5146	0.48	+0.5
5,139,872	+		GFF5146	0.50	+0.9
5,139,872	+		GFF5146	0.50	-1.3
5,139,877	+		GFF5146	0.51	-0.3
5,139,877	+		GFF5146	0.51	-0.8
5,139,880	-		GFF5146	0.51	+0.2
5,139,880	-		GFF5146	0.51	-0.4
5,139,880	-		GFF5146	0.51	+0.2
5,139,880	-		GFF5146	0.51	-1.1
5,139,885	-		GFF5146	0.52	-0.3
5,139,921	+		GFF5146	0.57	+0.1
5,139,933	-		GFF5146	0.58	+1.1
5,139,943	+		GFF5146	0.60	+0.0
5,139,943	+		GFF5146	0.60	+0.4
5,139,948	+		GFF5146	0.60	+1.0
5,139,950	+		GFF5146	0.61	-0.4
5,139,955	+		GFF5146	0.61	+0.1
5,139,985	-		GFF5146	0.65	-0.3
5,139,999	+		GFF5146	0.67	-0.3
5,140,015	+		GFF5146	0.69	-0.5
5,140,023	-		GFF5146	0.70	+0.7
5,140,029	-		GFF5146	0.71	+0.3
5,140,048	-		GFF5146	0.74	-0.5
5,140,081	+		GFF5146	0.78	-0.7
5,140,089	-		GFF5146	0.80	-2.2
5,140,117	-		GFF5146	0.83	-2.0
5,140,125	+		GFF5146	0.84	-1.1
5,140,135	-		GFF5146	0.86	+0.7
5,140,135	-		GFF5146	0.86	-0.7
5,140,135	-		GFF5146	0.86	-2.3
5,140,145	+		GFF5146	0.87	-0.1
5,140,145	+		GFF5146	0.87	+0.7
5,140,148	-		GFF5146	0.88	-1.6
5,140,153	-		GFF5146	0.88	-1.3
5,140,153	-		GFF5146	0.88	-1.1
5,140,153	-		GFF5146	0.88	-1.0
5,140,153	-		GFF5146	0.88	+0.1
5,140,178	+				+0.4
5,140,201	-				+0.1
5,140,208	+				+0.4
5,140,232	+				-0.4
5,140,233	+				+0.5
5,140,233	+				-1.2
5,140,233	+				-1.6
5,140,233	+				+0.2
5,140,233	+				-0.1
5,140,241	-				-0.2
5,140,241	-				+1.0
5,140,241	-				+0.2
5,140,242	+				+0.2
5,140,338	-				+0.7
5,140,361	-				+0.2
5,140,361	-				+0.3
5,140,374	-				-1.7
5,140,374	-				+0.2
5,140,374	-				-0.5
5,140,386	-				+0.4
5,140,386	-				+0.1
5,140,395	-				-0.3
5,140,409	+				-0.3
5,140,417	-				-1.1
5,140,445	+				-0.3
5,140,450	+				-0.7
5,140,450	+				-0.0
5,140,450	+				+0.1
5,140,453	-				-1.0
5,140,455	+				-0.5
5,140,455	+				-0.4
5,140,458	-				+0.5
5,140,473	-				-0.3
5,140,501	+				+1.0
5,140,544	+				-1.5
5,140,557	-				-1.0
5,140,567	+				-0.6
5,140,579	-				+0.3
5,140,595	-				-0.1
5,140,602	+				-1.2
5,140,620	-				+0.3
5,140,650	-				+0.7
5,140,650	-				+0.7
5,140,650	-				-0.1
5,140,714	+		GFF5147	0.10	-0.1
5,140,722	-		GFF5147	0.11	+0.6
5,140,722	-		GFF5147	0.11	-0.7
5,140,722	-		GFF5147	0.11	+1.7
5,140,726	+		GFF5147	0.11	-0.4
5,140,730	+		GFF5147	0.12	+1.2
5,140,732	+		GFF5147	0.12	-0.7
5,140,734	-		GFF5147	0.12	-0.3
5,140,734	-		GFF5147	0.12	-0.7
5,140,765	+		GFF5147	0.16	+0.6
5,140,765	+		GFF5147	0.16	+0.3
5,140,768	-		GFF5147	0.16	-0.0
5,140,773	-		GFF5147	0.17	+0.6
5,140,779	-		GFF5147	0.17	-0.8
5,140,867	-		GFF5147	0.27	+0.2
5,140,867	-		GFF5147	0.27	-0.5
5,140,867	-		GFF5147	0.27	+0.4
5,140,919	+		GFF5147	0.33	+0.5
5,140,924	+		GFF5147	0.34	-0.5
5,140,965	-		GFF5147	0.39	-0.3
5,141,022	+		GFF5147	0.45	+0.5
5,141,027	+		GFF5147	0.46	+0.4
5,141,027	+		GFF5147	0.46	+0.4
5,141,027	+		GFF5147	0.46	+0.5
5,141,030	-		GFF5147	0.46	-0.8
5,141,035	-		GFF5147	0.47	+0.6
5,141,035	-		GFF5147	0.47	-0.0
5,141,077	-		GFF5147	0.51	-0.3
5,141,080	-		GFF5147	0.52	+0.0
5,141,118	+		GFF5147	0.56	-0.3
5,141,118	+		GFF5147	0.56	-0.0
5,141,135	+		GFF5147	0.58	-0.6
5,141,189	+		GFF5147	0.64	+0.4