Strain Fitness in Sphingobium sp. HT1-2 around GFF5129

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
5,119,275	+				-0.7
5,119,300	+				+1.0
5,119,305	+				-1.3
5,119,305	+				-0.3
5,119,305	+				+0.6
5,119,305	+				+0.4
5,119,306	-				+0.1
5,119,313	-				+1.1
5,119,313	-				-0.8
5,119,328	+				-1.9
5,119,328	+				-0.1
5,119,328	+				-0.0
5,119,328	+				-1.4
5,119,328	+				-1.3
5,119,336	-				+0.8
5,119,336	-				-2.0
5,119,336	-				+0.6
5,119,336	-				-1.9
5,119,336	-				-0.8
5,119,336	-				-1.1
5,119,336	-				-0.7
5,119,336	-				+0.2
5,119,336	-				+1.3
5,119,336	-				-0.3
5,119,336	-				-0.6
5,119,352	+				-0.5
5,119,360	+				-1.1
5,119,407	+		GFF5128	0.12	+0.6
5,119,415	-		GFF5128	0.13	-2.7
5,119,515	-		GFF5128	0.23	+0.6
5,119,516	+		GFF5128	0.23	+0.5
5,119,538	+		GFF5128	0.25	-1.4
5,119,538	+		GFF5128	0.25	-1.0
5,119,543	+		GFF5128	0.26	+1.3
5,119,543	+		GFF5128	0.26	+0.4
5,119,543	+		GFF5128	0.26	-0.9
5,119,544	+		GFF5128	0.26	+1.5
5,119,546	-		GFF5128	0.26	-2.3
5,119,551	-		GFF5128	0.27	-0.6
5,119,551	-		GFF5128	0.27	-0.1
5,119,551	-		GFF5128	0.27	-0.0
5,119,551	-		GFF5128	0.27	+0.1
5,119,551	-		GFF5128	0.27	+0.6
5,119,551	-		GFF5128	0.27	-1.5
5,119,561	+		GFF5128	0.28	+1.0
5,119,561	+		GFF5128	0.28	-0.1
5,119,561	+		GFF5128	0.28	-0.4
5,119,561	+		GFF5128	0.28	-0.8
5,119,561	+		GFF5128	0.28	-0.1
5,119,566	+		GFF5128	0.28	+0.2
5,119,569	-		GFF5128	0.29	-1.7
5,119,569	-		GFF5128	0.29	-1.3
5,119,569	-		GFF5128	0.29	-0.3
5,119,569	-		GFF5128	0.29	+0.3
5,119,571	-		GFF5128	0.29	+0.1
5,119,574	-		GFF5128	0.29	+0.1
5,119,574	-		GFF5128	0.29	+0.5
5,119,574	-		GFF5128	0.29	+0.5
5,119,579	-		GFF5128	0.30	-0.3
5,119,591	-		GFF5128	0.31	+0.2
5,119,598	+		GFF5128	0.32	-0.1
5,119,620	-		GFF5128	0.34	-0.2
5,119,626	+		GFF5128	0.35	+0.3
5,119,630	-		GFF5128	0.35	+0.3
5,119,634	-		GFF5128	0.35	-1.7
5,119,636	+		GFF5128	0.36	-1.7
5,119,679	+		GFF5128	0.40	+0.4
5,119,679	+		GFF5128	0.40	+0.7
5,119,733	+		GFF5128	0.46	-0.6
5,119,733	+		GFF5128	0.46	+0.4
5,119,733	+		GFF5128	0.46	-0.7
5,119,741	-		GFF5128	0.46	-2.6
5,119,741	-		GFF5128	0.46	-1.6
5,119,741	-		GFF5128	0.46	-0.3
5,119,741	-		GFF5128	0.46	+0.9
5,119,748	+		GFF5128	0.47	-0.9
5,119,758	+		GFF5128	0.48	-2.1
5,119,815	+		GFF5128	0.54	-2.0
5,119,825	-		GFF5128	0.55	-1.1
5,119,825	-		GFF5128	0.55	-0.9
5,119,881	-		GFF5128	0.61	-0.6
5,119,881	-		GFF5128	0.61	-0.5
5,119,883	-		GFF5128	0.61	-0.6
5,119,883	-		GFF5128	0.61	-1.4
5,119,897	+		GFF5128	0.63	-0.3
5,119,904	+		GFF5128	0.63	-2.6
5,119,905	-		GFF5128	0.63	-2.3
5,119,912	-		GFF5128	0.64	-0.3
5,119,918	+		GFF5128	0.65	+0.3
5,119,918	+		GFF5128	0.65	-0.2
5,119,920	+		GFF5128	0.65	+0.5
5,119,926	-		GFF5128	0.66	+0.4
5,119,928	+		GFF5128	0.66	-1.0
5,119,928	-		GFF5128	0.66	-0.4
5,119,974	+		GFF5128	0.70	-1.5
5,119,974	-		GFF5128	0.70	-0.3
5,119,975	+		GFF5128	0.71	-0.7
5,119,975	+		GFF5128	0.71	+1.0
5,119,983	-		GFF5128	0.71	+0.5
5,119,983	-		GFF5128	0.71	+1.1
5,119,983	-		GFF5128	0.71	-0.9
5,119,983	-		GFF5128	0.71	-1.0
5,119,983	-		GFF5128	0.71	-2.8
5,119,985	-		GFF5128	0.72	+1.3
5,119,993	+		GFF5128	0.72	-2.7
5,119,993	+		GFF5128	0.72	+1.2
5,120,001	-		GFF5128	0.73	-2.0
5,120,001	-		GFF5128	0.73	+0.9
5,120,001	-		GFF5128	0.73	+0.4
5,120,024	+		GFF5128	0.76	+1.0
5,120,069	+		GFF5128	0.80	-0.3
5,120,069	+		GFF5128	0.80	-1.2
5,120,069	+		GFF5128	0.80	-0.4
5,120,069	+		GFF5128	0.80	-0.1
5,120,069	+		GFF5128	0.80	-0.0
5,120,069	+		GFF5128	0.80	+0.7
5,120,077	-		GFF5128	0.81	+0.5
5,120,077	-		GFF5128	0.81	+0.1
5,120,077	-		GFF5128	0.81	-0.1
5,120,077	-		GFF5128	0.81	-0.1
5,120,077	-		GFF5128	0.81	+0.1
5,120,082	-		GFF5128	0.82	+0.9
5,120,092	-		GFF5128	0.83	-0.4
5,120,092	-		GFF5128	0.83	+1.2
5,120,092	-		GFF5128	0.83	+0.7
5,120,096	+		GFF5128	0.83	+1.1
5,120,146	+		GFF5128	0.88	-0.9
5,120,146	+		GFF5128	0.88	-0.1
5,120,146	+		GFF5128	0.88	+0.5
5,120,146	+		GFF5128	0.88	+0.4
5,120,146	+		GFF5128	0.88	-2.6
5,120,146	+		GFF5128	0.88	-0.9
5,120,146	+		GFF5128	0.88	-0.7
5,120,146	+		GFF5128	0.88	-0.6
5,120,148	-		GFF5128	0.88	+0.6
5,120,154	-		GFF5128	0.89	-0.5
5,120,154	-		GFF5128	0.89	-0.1
5,120,154	-		GFF5128	0.89	-1.5
5,120,154	-		GFF5128	0.89	+0.4
5,120,193	+				-0.7
5,120,198	+				-0.9
5,120,198	+				-0.3
5,120,198	+				+1.5
5,120,198	+				-1.7
5,120,200	+				-0.9
5,120,201	-				+0.3
5,120,206	-				+0.4
5,120,206	-				+0.8
5,120,207	+				-0.6
5,120,208	-				-1.1
5,120,208	-				-0.2
5,120,233	+				-0.4
5,120,235	-				-2.7
5,120,248	+				+0.3
5,120,250	+				-0.2
5,120,273	+				-2.4
5,120,273	+				-1.0
5,120,278	+				-0.5
5,120,281	-				-0.7
5,120,285	+				-1.7
5,120,302	+				+0.6
5,120,302	+				+0.6
5,120,319	+				-1.8
5,120,319	+				+0.1
5,120,328	-				-0.8
5,120,330	+				+0.6
5,120,338	-				-0.5
5,120,348	+				+0.5
5,120,356	-				-0.2
5,120,386	+				-1.4
5,120,386	+				+0.9
5,120,394	-				-1.3
5,120,399	-				-0.7
5,120,401	+				-0.5
5,120,408	-				-0.9
5,120,409	-				-0.1
5,120,423	-				-0.7
5,120,427	-				-0.4
5,120,477	+				-0.3
5,120,485	-				+0.3
5,120,491	-				-0.0
5,120,499	-				-2.5
5,120,499	-				-1.3
5,120,501	+				-1.7
5,120,501	+				+0.4
5,120,501	+				+0.8
5,120,501	+				+1.1
5,120,501	+				-0.2
5,120,501	+				+0.3
5,120,501	+				-0.1
5,120,508	+				+0.5
5,120,509	-		GFF5129	0.10	+0.6
5,120,509	-		GFF5129	0.10	-0.8
5,120,509	-		GFF5129	0.10	-2.1
5,120,509	-		GFF5129	0.10	-0.1
5,120,509	-		GFF5129	0.10	-0.6
5,120,510	-		GFF5129	0.10	-0.9
5,120,510	-		GFF5129	0.10	+0.3
5,120,510	-		GFF5129	0.10	-0.7
5,120,511	-		GFF5129	0.10	-0.6
5,120,521	-		GFF5129	0.11	+0.2
5,120,552	+		GFF5129	0.12	-0.4
5,120,552	+		GFF5129	0.12	+0.4
5,120,552	+		GFF5129	0.12	+1.6
5,120,554	-		GFF5129	0.12	+0.1
5,120,560	-		GFF5129	0.12	-1.0
5,120,562	+		GFF5129	0.12	-0.8
5,120,562	+		GFF5129	0.12	+0.6
5,120,565	-		GFF5129	0.12	-0.1
5,120,626	-		GFF5129	0.15	+0.1
5,120,634	-		GFF5129	0.15	-0.1
5,120,646	-		GFF5129	0.15	+0.7
5,120,716	+		GFF5129	0.18	+0.6
5,120,719	-		GFF5129	0.18	-1.7
5,120,731	+		GFF5129	0.19	+0.8
5,120,731	+		GFF5129	0.19	+0.5
5,120,734	+		GFF5129	0.19	-0.3
5,120,739	+		GFF5129	0.19	+0.2
5,120,739	-		GFF5129	0.19	+0.2
5,120,742	-		GFF5129	0.19	+0.5
5,120,742	-		GFF5129	0.19	+0.6
5,120,757	+		GFF5129	0.20	-0.5
5,120,776	+		GFF5129	0.21	-1.3
5,120,776	+		GFF5129	0.21	-0.2
5,120,783	-		GFF5129	0.21	-0.8
5,120,784	-		GFF5129	0.21	-2.4
5,120,839	+		GFF5129	0.23	-0.5
5,120,842	-		GFF5129	0.23	-2.1
5,120,861	+		GFF5129	0.24	-0.9
5,120,869	-		GFF5129	0.24	-2.1
5,120,869	-		GFF5129	0.24	-0.6
5,120,876	+		GFF5129	0.25	+0.8
5,120,887	+		GFF5129	0.25	-0.5
5,120,887	+		GFF5129	0.25	-0.6
5,120,891	-		GFF5129	0.25	-1.3
5,120,897	+		GFF5129	0.25	-0.1
5,120,916	+		GFF5129	0.26	-0.1
5,120,924	-		GFF5129	0.26	+0.7
5,121,027	+		GFF5129	0.31	-1.1
5,121,030	-		GFF5129	0.31	-1.1
5,121,032	+		GFF5129	0.31	-1.4
5,121,040	-		GFF5129	0.31	-0.2
5,121,040	-		GFF5129	0.31	-0.7
5,121,057	+		GFF5129	0.32	+1.0
5,121,058	-		GFF5129	0.32	+0.4
5,121,082	-		GFF5129	0.33	-0.1
5,121,082	-		GFF5129	0.33	+1.2
5,121,089	+		GFF5129	0.33	+0.2
5,121,089	+		GFF5129	0.33	-0.0
5,121,097	-		GFF5129	0.33	+0.9
5,121,101	+		GFF5129	0.33	+0.7
5,121,109	+		GFF5129	0.34	+0.5
5,121,119	+		GFF5129	0.34	+0.0
5,121,126	+		GFF5129	0.34	-0.3
5,121,126	+		GFF5129	0.34	+0.7
5,121,126	+		GFF5129	0.34	+0.3
5,121,134	-		GFF5129	0.35	+0.2
5,121,134	-		GFF5129	0.35	-1.1
5,121,134	-		GFF5129	0.35	-0.8
5,121,147	+		GFF5129	0.35	-1.0
5,121,164	-		GFF5129	0.36	-0.1
5,121,171	+		GFF5129	0.36	+0.6
5,121,176	-		GFF5129	0.36	-0.2
5,121,178	+		GFF5129	0.37	-0.8
5,121,179	-		GFF5129	0.37	+0.0
5,121,186	-		GFF5129	0.37	+0.1
5,121,192	-		GFF5129	0.37	+0.1
5,121,194	-		GFF5129	0.37	+0.2
5,121,201	+		GFF5129	0.37	-0.0
5,121,203	+		GFF5129	0.38	+0.2
5,121,219	+		GFF5129	0.38	+0.2
5,121,224	+		GFF5129	0.38	-1.1
5,121,232	-		GFF5129	0.39	-1.8
5,121,239	+		GFF5129	0.39	-0.0
5,121,251	+		GFF5129	0.39	-1.3
5,121,251	+		GFF5129	0.39	+0.5
5,121,251	+		GFF5129	0.39	+0.8
5,121,266	-		GFF5129	0.40	+0.6
5,121,275	-		GFF5129	0.40	-1.1
5,121,287	-		GFF5129	0.41	-0.8
5,121,296	+		GFF5129	0.41	-2.1
5,121,305	+		GFF5129	0.42	+0.8
5,121,305	+		GFF5129	0.42	+0.2
5,121,305	+		GFF5129	0.42	-0.4
5,121,305	+		GFF5129	0.42	+0.2
5,121,305	+		GFF5129	0.42	-0.2
5,121,305	+		GFF5129	0.42	-2.1
5,121,305	+		GFF5129	0.42	+0.6
5,121,305	+		GFF5129	0.42	-0.8
5,121,305	+		GFF5129	0.42	+0.2
5,121,306	-		GFF5129	0.42	-0.8
5,121,310	+		GFF5129	0.42	+0.3
5,121,310	+		GFF5129	0.42	-1.0
5,121,310	+		GFF5129	0.42	-0.3
5,121,313	-		GFF5129	0.42	+1.1
5,121,313	-		GFF5129	0.42	+0.6
5,121,313	-		GFF5129	0.42	-0.3
5,121,313	-		GFF5129	0.42	+0.4
5,121,313	-		GFF5129	0.42	-0.5
5,121,328	+		GFF5129	0.42	+0.3
5,121,328	+		GFF5129	0.42	+0.6
5,121,328	+		GFF5129	0.42	+0.6
5,121,328	+		GFF5129	0.42	+0.4
5,121,329	+		GFF5129	0.43	+0.7
5,121,329	+		GFF5129	0.43	-0.3
5,121,336	+		GFF5129	0.43	-0.2
5,121,336	+		GFF5129	0.43	-1.6
5,121,336	+		GFF5129	0.43	+0.6
5,121,336	-		GFF5129	0.43	-0.0
5,121,336	-		GFF5129	0.43	-0.3
5,121,336	-		GFF5129	0.43	-0.3
5,121,336	-		GFF5129	0.43	-0.1
5,121,337	-		GFF5129	0.43	-0.7
5,121,337	-		GFF5129	0.43	-0.5
5,121,337	-		GFF5129	0.43	-1.8
5,121,344	-		GFF5129	0.43	-2.0
5,121,411	+		GFF5129	0.46	-0.4
5,121,411	-		GFF5129	0.46	-0.7
5,121,475	+		GFF5129	0.48	-0.5
5,121,475	+		GFF5129	0.48	+0.4
5,121,475	+		GFF5129	0.48	-0.4
5,121,478	-		GFF5129	0.48	+0.3
5,121,483	-		GFF5129	0.49	-0.2
5,121,483	-		GFF5129	0.49	+0.8
5,121,520	-		GFF5129	0.50	-0.7
5,121,558	-		GFF5129	0.52	+0.6
5,121,573	-		GFF5129	0.52	-0.2
5,121,586	+		GFF5129	0.53	-0.9
5,121,586	+		GFF5129	0.53	-1.4
5,121,586	-		GFF5129	0.53	-1.4
5,121,591	+		GFF5129	0.53	+1.1
5,121,591	+		GFF5129	0.53	-0.1
5,121,599	-		GFF5129	0.53	-0.3
5,121,626	+		GFF5129	0.54	-0.7
5,121,645	+		GFF5129	0.55	+0.5
5,121,653	-		GFF5129	0.55	-1.8
5,121,653	-		GFF5129	0.55	+0.7
5,121,664	+		GFF5129	0.56	+0.1
5,121,664	+		GFF5129	0.56	-1.7
5,121,664	+		GFF5129	0.56	-2.3
5,121,669	+		GFF5129	0.56	-0.8
5,121,672	-		GFF5129	0.56	-1.2
5,121,672	-		GFF5129	0.56	-0.7
5,121,672	-		GFF5129	0.56	-0.8
5,121,679	+		GFF5129	0.56	+0.7
5,121,683	+		GFF5129	0.57	+0.6
5,121,691	+		GFF5129	0.57	-1.7
5,121,699	-		GFF5129	0.57	-0.8
5,121,713	-		GFF5129	0.58	-1.7
5,121,771	-		GFF5129	0.60	+0.4
5,121,774	-		GFF5129	0.60	-0.6
5,121,776	-		GFF5129	0.60	+0.5
5,121,806	+		GFF5129	0.61	+0.4
5,121,823	-		GFF5129	0.62	-0.5
5,121,823	-		GFF5129	0.62	-0.7
5,121,833	+		GFF5129	0.63	+1.2
5,121,833	+		GFF5129	0.63	+0.3
5,121,833	+		GFF5129	0.63	+1.3
5,121,833	+		GFF5129	0.63	-1.5
5,121,841	-		GFF5129	0.63	-0.4
5,121,841	-		GFF5129	0.63	+0.5
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5,122,203	-		GFF5129	0.77	-1.4
5,122,203	-		GFF5129	0.77	+1.0
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5,122,219	-		GFF5129	0.78	-0.3
5,122,219	-		GFF5129	0.78	-0.2
5,122,230	-		GFF5129	0.78	-1.7
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5,122,474	-		GFF5129	0.88	-1.0
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5,122,518	-		GFF5129	0.90	-0.8
5,122,518	-		GFF5129	0.90	+0.0
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5,122,518	-		GFF5129	0.90	-0.5
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5,122,523	-		GFF5129	0.90	-2.3
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5,122,540	+				-1.6
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5,122,574	+				+0.5
5,122,576	+				-0.7
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5,122,602	-				+0.6
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5,122,631	+				-2.8
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