Strain Fitness in Sphingobium sp. HT1-2 around GFF5102

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
5,089,130	-		GFF5100	0.58	+0.9
5,089,130	-		GFF5100	0.58	-0.0
5,089,132	+		GFF5100	0.58	+0.3
5,089,132	+		GFF5100	0.58	+0.7
5,089,140	-		GFF5100	0.59	-0.1
5,089,140	-		GFF5100	0.59	-0.1
5,089,149	+		GFF5100	0.60	-0.2
5,089,157	-		GFF5100	0.60	-0.3
5,089,188	+		GFF5100	0.64	+0.2
5,089,196	-		GFF5100	0.64	+0.5
5,089,196	-		GFF5100	0.64	+0.2
5,089,196	-		GFF5100	0.64	-0.4
5,089,196	-		GFF5100	0.64	-0.8
5,089,224	-		GFF5100	0.67	-0.9
5,089,250	+		GFF5100	0.70	-0.3
5,089,260	+		GFF5100	0.71	+0.6
5,089,270	+		GFF5100	0.72	-0.1
5,089,305	-		GFF5100	0.75	+0.9
5,089,321	+		GFF5100	0.77	-1.4
5,089,342	+		GFF5100	0.79	-1.4
5,089,342	+		GFF5100	0.79	-0.1
5,089,349	+		GFF5100	0.80	+0.3
5,089,349	+		GFF5100	0.80	-0.6
5,089,349	+		GFF5100	0.80	-0.2
5,089,350	-		GFF5100	0.80	-1.8
5,089,357	-		GFF5100	0.81	-0.6
5,089,357	-		GFF5100	0.81	-0.5
5,089,374	+		GFF5100	0.82	-2.2
5,089,382	-		GFF5100	0.83	-1.7
5,089,408	+		GFF5100	0.86	-3.7
5,089,408	+		GFF5100	0.86	-1.2
5,089,421	-		GFF5100	0.87	-2.3
5,089,425	+		GFF5100	0.87	-0.0
5,089,433	-		GFF5100	0.88	-0.4
5,089,470	-				-0.4
5,089,495	-				+0.1
5,089,501	+				-0.8
5,089,537	-				-0.2
5,089,553	-				-1.7
5,089,618	+				+0.3
5,089,633	-				-0.2
5,089,645	-				-2.3
5,089,671	-				-1.8
5,089,671	-				+0.2
5,089,703	-		GFF5101	0.15	-0.3
5,089,705	+		GFF5101	0.15	-0.6
5,089,705	+		GFF5101	0.15	-0.6
5,089,705	+		GFF5101	0.15	-0.7
5,089,713	-		GFF5101	0.17	-0.8
5,089,713	-		GFF5101	0.17	-1.7
5,089,713	-		GFF5101	0.17	+0.2
5,089,713	-		GFF5101	0.17	+0.1
5,089,713	-		GFF5101	0.17	+0.0
5,089,713	-		GFF5101	0.17	+0.4
5,089,718	-		GFF5101	0.18	+0.1
5,089,723	+		GFF5101	0.19	-0.6
5,089,737	-		GFF5101	0.22	-1.4
5,089,771	-		GFF5101	0.29	-0.1
5,089,781	+		GFF5101	0.31	-1.5
5,089,789	-		GFF5101	0.32	-0.9
5,089,829	+		GFF5101	0.40	-1.5
5,089,831	-		GFF5101	0.41	-0.5
5,089,839	-		GFF5101	0.42	+0.7
5,089,896	-		GFF5101	0.53	-0.9
5,089,896	-		GFF5101	0.53	-1.5
5,089,907	-		GFF5101	0.56	-2.2
5,089,907	-		GFF5101	0.56	-0.5
5,089,946	-		GFF5101	0.63	-1.8
5,089,980	-		GFF5101	0.70	+0.7
5,090,014	+		GFF5101	0.77	-0.9
5,090,077	-		GFF5101	0.90	-1.5
5,090,084	+				-1.4
5,090,087	-				-0.3
5,090,091	+				-0.1
5,090,091	+				-0.7
5,090,091	+				-1.0
5,090,091	+				-0.1
5,090,091	+				-0.6
5,090,091	+				-0.3
5,090,091	+				-1.4
5,090,091	+				-0.6
5,090,091	+				-0.7
5,090,099	-				-0.2
5,090,099	-				+0.1
5,090,099	-				-1.1
5,090,099	-				-0.5
5,090,099	-				-0.4
5,090,099	-				-0.2
5,090,099	-				-1.6
5,090,099	-				-0.5
5,090,113	+				-1.9
5,090,113	+				+0.0
5,090,113	+				-1.0
5,090,113	+				-0.9
5,090,113	+				-0.8
5,090,113	+				-0.2
5,090,121	-				-0.9
5,090,121	-				+0.2
5,090,135	+				-1.5
5,090,135	+				-0.2
5,090,143	-				+0.7
5,090,143	-				-2.5
5,090,143	-				-1.5
5,090,143	-				-1.0
5,090,148	+				-0.0
5,090,153	+				-0.1
5,090,176	-				+0.1
5,090,208	-		GFF5102	0.14	+0.9
5,090,224	+		GFF5102	0.17	-0.6
5,090,227	+		GFF5102	0.17	-0.3
5,090,232	-		GFF5102	0.18	+0.2
5,090,238	+		GFF5102	0.19	-0.6
5,090,242	-		GFF5102	0.20	-0.9
5,090,263	+		GFF5102	0.23	-1.6
5,090,271	-		GFF5102	0.25	-1.8
5,090,272	-		GFF5102	0.25	-1.6
5,090,272	-		GFF5102	0.25	-0.9
5,090,310	+		GFF5102	0.31	+0.4
5,090,358	-		GFF5102	0.39	-2.1
5,090,360	+		GFF5102	0.40	-1.3
5,090,363	-		GFF5102	0.40	-1.5
5,090,378	-		GFF5102	0.43	-2.2
5,090,388	+		GFF5102	0.44	+1.0
5,090,396	-		GFF5102	0.46	-1.5
5,090,396	-		GFF5102	0.46	-1.3
5,090,407	+		GFF5102	0.47	-1.3
5,090,415	-		GFF5102	0.49	-0.5
5,090,428	+		GFF5102	0.51	-1.5
5,090,475	+		GFF5102	0.59	-0.7
5,090,477	+		GFF5102	0.59	-1.1
5,090,480	+		GFF5102	0.60	-0.3
5,090,511	-		GFF5102	0.65	-1.4
5,090,515	-		GFF5102	0.66	-3.5
5,090,518	+		GFF5102	0.66	-1.2
5,090,524	-		GFF5102	0.67	-0.2
5,090,524	-		GFF5102	0.67	-1.4
5,090,526	-		GFF5102	0.68	-1.6
5,090,526	-		GFF5102	0.68	+1.2
5,090,526	-		GFF5102	0.68	-0.6
5,090,536	+		GFF5102	0.69	-1.1
5,090,536	+		GFF5102	0.69	-1.1
5,090,536	+		GFF5102	0.69	-0.7
5,090,536	+		GFF5102	0.69	-0.8
5,090,544	-		GFF5102	0.71	-0.8
5,090,544	-		GFF5102	0.71	-2.7
5,090,544	-		GFF5102	0.71	+0.4
5,090,549	-		GFF5102	0.71	+0.5
5,090,549	-		GFF5102	0.71	-0.5
5,090,563	-		GFF5102	0.74	-0.1
5,090,655	+		GFF5102	0.89	-0.2
5,090,660	+				-2.3
5,090,668	-				-0.8
5,090,668	-				-1.7
5,090,675	-				-3.2
5,090,706	+				-0.4
5,090,713	+				-0.5
5,090,758	+				-2.5
5,090,766	-				-1.8
5,090,771	+				-1.2
5,090,807	+				+0.9
5,090,815	-		GFF5103	0.11	+0.9
5,090,826	-		GFF5103	0.13	-0.8
5,090,833	-		GFF5103	0.14	+0.2
5,090,833	-		GFF5103	0.14	+0.3
5,090,837	+		GFF5103	0.15	-0.6
5,090,839	+		GFF5103	0.15	-1.4
5,090,847	-		GFF5103	0.17	-0.4
5,090,847	-		GFF5103	0.17	+0.2
5,090,886	+		GFF5103	0.24	-1.0
5,090,900	+		GFF5103	0.26	-1.6
5,090,903	-		GFF5103	0.27	-1.0
5,090,941	+		GFF5103	0.33	+0.7
5,090,946	+		GFF5103	0.34	-0.2
5,090,946	+		GFF5103	0.34	-2.2
5,090,946	+		GFF5103	0.34	-0.7
5,090,949	-		GFF5103	0.35	-0.1
5,090,952	-		GFF5103	0.35	+0.2
5,090,954	-		GFF5103	0.36	-1.1
5,090,954	-		GFF5103	0.36	-0.3
5,090,954	-		GFF5103	0.36	+0.5
5,090,954	-		GFF5103	0.36	-1.1
5,090,954	-		GFF5103	0.36	-0.2
5,090,993	-		GFF5103	0.42	-0.7
5,090,993	-		GFF5103	0.42	-1.0
5,090,993	-		GFF5103	0.42	-0.5
5,090,993	-		GFF5103	0.42	+0.5
5,090,993	-		GFF5103	0.42	-1.0
5,090,999	-		GFF5103	0.44	-1.1
5,090,999	-		GFF5103	0.44	-0.6
5,091,010	+		GFF5103	0.45	-0.7
5,091,018	-		GFF5103	0.47	-0.2
5,091,021	+		GFF5103	0.47	-0.7
5,091,021	+		GFF5103	0.47	-0.5
5,091,029	-		GFF5103	0.49	-0.1
5,091,029	-		GFF5103	0.49	-1.1
5,091,029	-		GFF5103	0.49	+0.5
5,091,029	-		GFF5103	0.49	-1.7
5,091,034	-		GFF5103	0.50	+0.1
5,091,068	+		GFF5103	0.56	-0.4
5,091,100	+		GFF5103	0.61	+0.5
5,091,139	+		GFF5103	0.68	+0.4
5,091,155	+		GFF5103	0.71	-0.7
5,091,207	-		GFF5103	0.80	+0.9
5,091,230	-		GFF5103	0.84	-1.2
5,091,240	-		GFF5103	0.86	-0.7
5,091,240	-		GFF5103	0.86	+0.9
5,091,272	-				+0.4
5,091,273	-				-2.5
5,091,284	-				+0.7
5,091,292	+				-1.9
5,091,392	+				-2.0
5,091,392	+				-0.3
5,091,392	+				+0.2
5,091,394	-				+1.0
5,091,400	+				+0.5
5,091,400	+				-0.4
5,091,400	-				-1.2
5,091,400	-				-1.2
5,091,402	+				-0.3
5,091,408	-				-0.3
5,091,408	-				+0.3
5,091,410	-				-0.4
5,091,461	+				-0.9
5,091,499	+				-2.0
5,091,505	-		GFF5104	0.10	-1.1
5,091,507	-		GFF5104	0.11	-0.6
5,091,518	-		GFF5104	0.12	+0.1
5,091,528	-		GFF5104	0.12	-1.2
5,091,529	+		GFF5104	0.13	-0.9
5,091,529	+		GFF5104	0.13	+0.2
5,091,529	+		GFF5104	0.13	-0.9
5,091,529	+		GFF5104	0.13	-0.1
5,091,529	+		GFF5104	0.13	-2.3
5,091,536	+		GFF5104	0.13	+1.1
5,091,537	-		GFF5104	0.13	+0.0
5,091,537	-		GFF5104	0.13	+0.1
5,091,537	-		GFF5104	0.13	-0.8
5,091,537	-		GFF5104	0.13	-1.0
5,091,537	-		GFF5104	0.13	-1.3
5,091,537	-		GFF5104	0.13	-1.2
5,091,537	-		GFF5104	0.13	-0.9
5,091,537	-		GFF5104	0.13	-0.9
5,091,544	-		GFF5104	0.14	-1.0
5,091,544	-		GFF5104	0.14	-1.8
5,091,558	+		GFF5104	0.15	+0.6
5,091,566	-		GFF5104	0.16	+0.4
5,091,573	-		GFF5104	0.16	-0.4
5,091,578	-		GFF5104	0.17	-0.1
5,091,644	+		GFF5104	0.23	+1.5
5,091,647	-		GFF5104	0.23	-0.5
5,091,656	+		GFF5104	0.24	+0.2
5,091,656	+		GFF5104	0.24	-0.8
5,091,680	+		GFF5104	0.26	+0.9
5,091,681	-		GFF5104	0.26	-0.7
5,091,682	+		GFF5104	0.26	-0.5
5,091,682	+		GFF5104	0.26	-1.1
5,091,688	-		GFF5104	0.27	-0.4
5,091,688	-		GFF5104	0.27	-0.2
5,091,688	-		GFF5104	0.27	-1.7
5,091,688	-		GFF5104	0.27	+0.8
5,091,690	-		GFF5104	0.27	-1.0
5,091,704	+		GFF5104	0.28	+0.6