Strain Fitness in Sphingobium sp. HT1-2 around GFF5090

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
5,079,927	+				+0.8
5,079,935	-				-2.4
5,079,968	+		GFF5088	0.14	+0.3
5,079,976	-		GFF5088	0.16	-0.8
5,079,978	+		GFF5088	0.17	-0.5
5,079,988	+		GFF5088	0.20	-0.4
5,080,000	+		GFF5088	0.23	-0.8
5,080,007	+		GFF5088	0.25	-0.5
5,080,008	-		GFF5088	0.25	-0.9
5,080,076	-		GFF5088	0.45	-2.1
5,080,082	-		GFF5088	0.47	-0.8
5,080,093	+		GFF5088	0.50	-1.3
5,080,093	+		GFF5088	0.50	-2.3
5,080,095	+		GFF5088	0.50	-0.5
5,080,118	-		GFF5088	0.57	-0.1
5,080,132	-		GFF5088	0.61	-0.1
5,080,133	-		GFF5088	0.61	-0.4
5,080,137	-		GFF5088	0.62	-0.5
5,080,174	-		GFF5088	0.73	-0.5
5,080,209	-		GFF5088	0.83	+0.2
5,080,218	-		GFF5088	0.86	+1.2
5,080,218	-		GFF5088	0.86	+0.6
5,080,225	+		GFF5088	0.88	+0.3
5,080,227	-		GFF5088	0.88	-0.7
5,080,234	-				+0.3
5,080,295	-				-2.0
5,080,335	-		GFF5089	0.15	-0.5
5,080,335	-		GFF5089	0.15	-0.1
5,080,354	+		GFF5089	0.18	-0.9
5,080,362	+		GFF5089	0.20	-0.1
5,080,370	-		GFF5089	0.21	+0.3
5,080,386	-		GFF5089	0.23	-1.7
5,080,387	-		GFF5089	0.24	-2.3
5,080,389	+		GFF5089	0.24	-0.3
5,080,389	+		GFF5089	0.24	-1.1
5,080,394	+		GFF5089	0.25	-0.1
5,080,394	+		GFF5089	0.25	-1.4
5,080,397	-		GFF5089	0.25	-1.2
5,080,402	-		GFF5089	0.26	-0.4
5,080,402	-		GFF5089	0.26	+0.7
5,080,407	-		GFF5089	0.27	-1.0
5,080,413	-		GFF5089	0.28	-0.7
5,080,415	+		GFF5089	0.28	-1.6
5,080,496	+		GFF5089	0.41	-0.8
5,080,505	+		GFF5089	0.42	-0.5
5,080,544	+		GFF5089	0.48	-0.5
5,080,544	+		GFF5089	0.48	-1.1
5,080,554	+		GFF5089	0.50	-1.0
5,080,558	+		GFF5089	0.50	-0.1
5,080,562	-		GFF5089	0.51	-0.8
5,080,573	+		GFF5089	0.53	-0.9
5,080,573	+		GFF5089	0.53	+0.9
5,080,573	+		GFF5089	0.53	-1.9
5,080,573	+		GFF5089	0.53	-0.3
5,080,573	+		GFF5089	0.53	-1.7
5,080,578	+		GFF5089	0.54	-0.1
5,080,581	-		GFF5089	0.54	+0.3
5,080,581	-		GFF5089	0.54	-0.9
5,080,583	+		GFF5089	0.54	-1.5
5,080,600	+		GFF5089	0.57	-1.1
5,080,605	+		GFF5089	0.58	-0.7
5,080,605	+		GFF5089	0.58	-1.7
5,080,605	+		GFF5089	0.58	-0.4
5,080,605	+		GFF5089	0.58	-0.1
5,080,608	-		GFF5089	0.58	-1.2
5,080,613	-		GFF5089	0.59	-0.6
5,080,613	-		GFF5089	0.59	-0.2
5,080,613	-		GFF5089	0.59	-0.5
5,080,620	+		GFF5089	0.60	+1.5
5,080,620	+		GFF5089	0.60	-0.9
5,080,628	+		GFF5089	0.61	-0.8
5,080,628	-		GFF5089	0.61	-0.1
5,080,628	-		GFF5089	0.61	-0.2
5,080,628	-		GFF5089	0.61	-1.2
5,080,630	-		GFF5089	0.62	-1.5
5,080,655	-		GFF5089	0.66	-1.2
5,080,692	-		GFF5089	0.71	-0.1
5,080,696	-		GFF5089	0.72	-2.0
5,080,699	+		GFF5089	0.72	+0.0
5,080,706	-		GFF5089	0.74	-1.1
5,080,712	+		GFF5089	0.74	-1.3
5,080,720	-		GFF5089	0.76	-0.4
5,080,725	+		GFF5089	0.77	-2.3
5,080,728	-		GFF5089	0.77	-0.8
5,080,738	-		GFF5089	0.79	+1.3
5,080,744	+		GFF5089	0.79	-0.2
5,080,785	+		GFF5089	0.86	-0.9
5,080,793	-		GFF5089	0.87	-1.8
5,080,826	-				+0.9
5,080,843	-				+1.1
5,080,860	-				-1.1
5,080,864	+				-0.5
5,080,869	+				-0.5
5,080,869	+				+0.8
5,080,877	-				+0.1
5,080,877	-				-0.2
5,080,877	-				-0.7
5,080,877	-				+0.1
5,080,877	-				-0.3
5,080,877	-				+0.7
5,080,877	-				-0.2
5,080,879	-				+0.3
5,080,923	+				-0.8
5,080,923	+				-1.5
5,080,958	-				-2.6
5,080,967	+				-1.4
5,080,967	+				-0.2
5,080,983	-				-1.3
5,081,037	-		GFF5090	0.15	-0.1
5,081,060	-		GFF5090	0.18	-1.0
5,081,060	-		GFF5090	0.18	-0.3
5,081,073	+		GFF5090	0.20	-0.4
5,081,073	+		GFF5090	0.20	+0.8
5,081,073	+		GFF5090	0.20	-1.4
5,081,075	-		GFF5090	0.20	-0.5
5,081,081	-		GFF5090	0.21	-0.9
5,081,081	-		GFF5090	0.21	-0.4
5,081,083	+		GFF5090	0.21	+1.1
5,081,083	+		GFF5090	0.21	+0.3
5,081,083	+		GFF5090	0.21	-1.2
5,081,091	-		GFF5090	0.22	-0.8
5,081,096	-		GFF5090	0.23	-0.1
5,081,106	+		GFF5090	0.24	-0.7
5,081,106	+		GFF5090	0.24	+0.3
5,081,106	+		GFF5090	0.24	-0.8
5,081,106	+		GFF5090	0.24	-1.4
5,081,106	+		GFF5090	0.24	-1.2
5,081,106	+		GFF5090	0.24	-1.0
5,081,106	+		GFF5090	0.24	-0.7
5,081,106	+		GFF5090	0.24	+0.1
5,081,106	+		GFF5090	0.24	+1.3
5,081,106	+		GFF5090	0.24	-1.0
5,081,106	+		GFF5090	0.24	-2.3
5,081,106	+		GFF5090	0.24	-0.2
5,081,106	+		GFF5090	0.24	-0.2
5,081,114	-		GFF5090	0.25	-0.3
5,081,114	-		GFF5090	0.25	+0.1
5,081,114	-		GFF5090	0.25	-1.5
5,081,114	-		GFF5090	0.25	-1.7
5,081,114	-		GFF5090	0.25	-1.1
5,081,114	-		GFF5090	0.25	-0.2
5,081,114	-		GFF5090	0.25	-1.6
5,081,114	-		GFF5090	0.25	+0.2
5,081,114	-		GFF5090	0.25	-0.5
5,081,114	-		GFF5090	0.25	-1.7
5,081,114	-		GFF5090	0.25	-2.7
5,081,114	-		GFF5090	0.25	-0.7
5,081,114	-		GFF5090	0.25	+0.9
5,081,114	-		GFF5090	0.25	+0.8
5,081,114	-		GFF5090	0.25	-1.7
5,081,114	-		GFF5090	0.25	-0.9
5,081,124	-		GFF5090	0.27	+0.9
5,081,132	+		GFF5090	0.28	+0.9
5,081,132	+		GFF5090	0.28	+0.2
5,081,146	-		GFF5090	0.30	-1.2
5,081,187	-		GFF5090	0.35	-0.9
5,081,209	+		GFF5090	0.38	-0.2
5,081,219	+		GFF5090	0.39	-0.5
5,081,249	+		GFF5090	0.43	-1.6
5,081,249	+		GFF5090	0.43	+0.4
5,081,249	+		GFF5090	0.43	+0.8
5,081,249	+		GFF5090	0.43	-0.8
5,081,249	+		GFF5090	0.43	-0.7
5,081,257	-		GFF5090	0.44	-0.6
5,081,257	-		GFF5090	0.44	-0.4
5,081,257	-		GFF5090	0.44	-0.8
5,081,291	-		GFF5090	0.49	-1.1
5,081,291	-		GFF5090	0.49	-0.6
5,081,291	-		GFF5090	0.49	+0.4
5,081,296	-		GFF5090	0.50	-0.3
5,081,326	+		GFF5090	0.54	-1.5
5,081,329	-		GFF5090	0.54	+0.6
5,081,365	+		GFF5090	0.59	-0.9
5,081,373	-		GFF5090	0.60	+0.6
5,081,383	-		GFF5090	0.61	-2.5
5,081,388	-		GFF5090	0.62	-1.0
5,081,438	+		GFF5090	0.69	-0.8
5,081,468	-		GFF5090	0.73	-1.5
5,081,490	-		GFF5090	0.75	+0.2
5,081,491	-		GFF5090	0.76	-0.9
5,081,497	-		GFF5090	0.76	+0.4
5,081,514	-		GFF5090	0.79	+0.5
5,081,523	+		GFF5090	0.80	+0.1
5,081,523	+		GFF5090	0.80	-0.9
5,081,559	+		GFF5090	0.85	+0.5
5,081,577	-		GFF5090	0.87	-1.2
5,081,580	+		GFF5090	0.87	-0.7
5,081,588	-		GFF5090	0.88	-1.3
5,081,588	-		GFF5090	0.88	-0.4
5,081,598	-		GFF5090	0.90	+0.4
5,081,633	+				-0.2
5,081,641	-				-0.2
5,081,641	-				+0.1
5,081,697	-				-0.7
5,081,697	-				-0.4
5,081,702	+				+0.9
5,081,710	-				-0.1
5,081,710	-				-0.9
5,081,710	-				+0.5
5,081,724	-		GFF5091	0.11	-0.6
5,081,785	-		GFF5091	0.23	+0.2
5,081,816	-		GFF5091	0.29	-1.0
5,081,839	+		GFF5091	0.34	+0.2
5,081,839	+		GFF5091	0.34	-0.2
5,081,899	+		GFF5091	0.46	-0.1
5,081,904	+		GFF5091	0.47	-0.9
5,081,907	-		GFF5091	0.47	+0.2
5,081,930	-		GFF5091	0.52	+0.9
5,081,940	+		GFF5091	0.54	-0.2
5,081,942	+		GFF5091	0.54	-0.6
5,081,956	+		GFF5091	0.57	+0.2
5,081,956	+		GFF5091	0.57	+0.2
5,081,956	+		GFF5091	0.57	+0.2
5,081,964	-		GFF5091	0.58	-0.3
5,081,969	-		GFF5091	0.59	+0.5
5,081,976	+		GFF5091	0.61	+0.4
5,081,977	+		GFF5091	0.61	-1.1
5,081,977	+		GFF5091	0.61	+1.9
5,081,977	+		GFF5091	0.61	-0.4
5,082,031	+		GFF5091	0.72	-0.3
5,082,031	+		GFF5091	0.72	-0.1
5,082,031	+		GFF5091	0.72	+0.5
5,082,031	+		GFF5091	0.72	-0.8
5,082,031	+		GFF5091	0.72	-0.3
5,082,031	+		GFF5091	0.72	-1.3
5,082,031	+		GFF5091	0.72	-0.1
5,082,031	+		GFF5091	0.72	-0.8
5,082,031	+		GFF5091	0.72	-0.2
5,082,036	+		GFF5091	0.73	-0.2
5,082,074	-		GFF5091	0.80	-0.3
5,082,079	-		GFF5091	0.81	+1.1
5,082,079	-		GFF5091	0.81	-2.2
5,082,084	-		GFF5091	0.82	-1.1
5,082,085	-		GFF5091	0.83	-0.7
5,082,127	-				-0.5
5,082,212	-		GFF5092	0.18	+0.2
5,082,291	-		GFF5092	0.68	-1.9
5,082,295	+		GFF5092	0.70	-1.1
5,082,298	-		GFF5092	0.72	-1.0
5,082,300	+		GFF5092	0.74	+0.3
5,082,303	-		GFF5092	0.75	+0.2
5,082,322	+		GFF5092	0.87	-2.0
5,082,322	-		GFF5092	0.87	+0.2
5,082,322	-		GFF5092	0.87	-0.7
5,082,374	-				-0.6
5,082,401	-		GFF5093	0.15	+0.2
5,082,417	+		GFF5093	0.23	-2.3
5,082,425	-		GFF5093	0.27	-0.9
5,082,425	-		GFF5093	0.27	-1.1
5,082,425	-		GFF5093	0.27	+0.1
5,082,425	-		GFF5093	0.27	+0.3
5,082,439	+		GFF5093	0.34	+0.3
5,082,476	+		GFF5093	0.52	-2.1
5,082,509	-		GFF5093	0.68	+0.6
5,082,548	+		GFF5093	0.87	-1.1
5,082,608	-				+0.8
5,082,622	-				-0.9
5,082,645	-				-0.8
5,082,645	-				+1.0
5,082,654	-				+0.2