Strain Fitness in Sphingobium sp. HT1-2 around GFF5050

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
5,045,949	-				-0.1
5,045,960	+				-1.4
5,045,960	+				+0.2
5,045,960	+				-1.9
5,045,960	+				+0.7
5,045,960	+				-0.6
5,045,968	-				+0.5
5,045,968	-				-0.9
5,045,992	-		GFF5049	0.10	-1.4
5,045,992	-		GFF5049	0.10	-1.3
5,045,992	-		GFF5049	0.10	+1.2
5,045,992	-		GFF5049	0.10	+0.1
5,046,037	+		GFF5049	0.15	-0.9
5,046,045	-		GFF5049	0.16	-0.5
5,046,066	+		GFF5049	0.18	-0.7
5,046,074	-		GFF5049	0.19	-0.7
5,046,076	+		GFF5049	0.19	+1.1
5,046,079	-		GFF5049	0.20	+0.3
5,046,079	-		GFF5049	0.20	-0.9
5,046,090	-		GFF5049	0.21	-0.2
5,046,101	+		GFF5049	0.22	+0.3
5,046,107	+		GFF5049	0.23	-0.9
5,046,107	+		GFF5049	0.23	+0.1
5,046,108	+		GFF5049	0.23	-2.4
5,046,115	-		GFF5049	0.24	-0.4
5,046,116	-		GFF5049	0.24	+0.5
5,046,116	-		GFF5049	0.24	-0.4
5,046,116	-		GFF5049	0.24	-0.3
5,046,162	+		GFF5049	0.29	-1.1
5,046,163	+		GFF5049	0.29	-0.4
5,046,171	-		GFF5049	0.30	-1.3
5,046,194	+		GFF5049	0.32	+0.8
5,046,200	-		GFF5049	0.33	-1.3
5,046,202	-		GFF5049	0.33	-1.4
5,046,202	-		GFF5049	0.33	-1.0
5,046,207	+		GFF5049	0.34	-0.1
5,046,224	-		GFF5049	0.35	+0.1
5,046,227	+		GFF5049	0.36	-0.8
5,046,230	+		GFF5049	0.36	-1.1
5,046,230	+		GFF5049	0.36	+0.0
5,046,230	+		GFF5049	0.36	+0.2
5,046,230	+		GFF5049	0.36	-0.4
5,046,238	-		GFF5049	0.37	-0.1
5,046,238	-		GFF5049	0.37	-1.6
5,046,238	-		GFF5049	0.37	-0.3
5,046,274	-		GFF5049	0.41	+0.1
5,046,307	+		GFF5049	0.44	-0.9
5,046,307	+		GFF5049	0.44	+0.9
5,046,317	-		GFF5049	0.45	+1.2
5,046,325	+		GFF5049	0.46	+0.6
5,046,338	-		GFF5049	0.48	-0.3
5,046,347	-		GFF5049	0.49	-0.7
5,046,352	+		GFF5049	0.49	-1.5
5,046,385	+		GFF5049	0.53	-0.2
5,046,390	+		GFF5049	0.53	-1.1
5,046,417	-		GFF5049	0.56	-1.4
5,046,433	+		GFF5049	0.58	-0.3
5,046,438	+		GFF5049	0.58	-1.3
5,046,438	+		GFF5049	0.58	-1.3
5,046,438	+		GFF5049	0.58	-0.0
5,046,438	+		GFF5049	0.58	+0.4
5,046,438	+		GFF5049	0.58	+0.1
5,046,438	+		GFF5049	0.58	-1.1
5,046,446	-		GFF5049	0.59	-1.0
5,046,446	-		GFF5049	0.59	-1.1
5,046,446	-		GFF5049	0.59	-0.5
5,046,446	-		GFF5049	0.59	-2.6
5,046,446	-		GFF5049	0.59	-0.7
5,046,469	+		GFF5049	0.62	-0.6
5,046,541	-		GFF5049	0.69	-0.3
5,046,551	+		GFF5049	0.71	-0.7
5,046,553	+		GFF5049	0.71	-1.6
5,046,553	+		GFF5049	0.71	-0.2
5,046,553	+		GFF5049	0.71	-0.8
5,046,553	+		GFF5049	0.71	-0.5
5,046,553	+		GFF5049	0.71	+0.1
5,046,553	+		GFF5049	0.71	-0.1
5,046,553	+		GFF5049	0.71	+0.4
5,046,555	+		GFF5049	0.71	+1.2
5,046,555	-		GFF5049	0.71	+1.6
5,046,560	+		GFF5049	0.72	+0.6
5,046,560	+		GFF5049	0.72	-1.2
5,046,561	-		GFF5049	0.72	+0.1
5,046,561	-		GFF5049	0.72	+0.4
5,046,561	-		GFF5049	0.72	-1.7
5,046,561	-		GFF5049	0.72	-0.4
5,046,561	-		GFF5049	0.72	-0.9
5,046,561	-		GFF5049	0.72	-0.3
5,046,561	-		GFF5049	0.72	-0.0
5,046,583	-		GFF5049	0.74	-0.0
5,046,587	+		GFF5049	0.74	-0.6
5,046,595	-		GFF5049	0.75	-1.7
5,046,628	+		GFF5049	0.79	-0.5
5,046,630	+		GFF5049	0.79	+0.7
5,046,633	+		GFF5049	0.79	-0.8
5,046,635	+		GFF5049	0.80	-0.2
5,046,643	-		GFF5049	0.80	+1.3
5,046,653	+		GFF5049	0.82	+0.9
5,046,658	+		GFF5049	0.82	+0.0
5,046,662	+		GFF5049	0.82	-0.2
5,046,666	+		GFF5049	0.83	-1.6
5,046,710	-		GFF5049	0.88	-0.2
5,046,716	-		GFF5049	0.88	-0.8
5,046,724	+		GFF5049	0.89	-0.4
5,046,732	-				-0.4
5,046,735	-				+0.5
5,046,746	-				+0.2
5,046,773	-				+0.5
5,046,774	+				-1.1
5,046,782	-				-2.2
5,046,791	+				+0.5
5,046,792	-				-0.0
5,046,794	+				-0.7
5,046,802	-				+0.9
5,046,816	+				-1.0
5,046,895	+				-0.2
5,046,895	+				-0.5
5,046,905	+				-1.9
5,046,905	+				+0.7
5,046,905	+				+0.1
5,046,913	-				-0.7
5,046,913	-				-2.9
5,046,913	-				+0.2
5,046,919	+				-0.6
5,046,929	-				-1.5
5,046,937	-				-0.4
5,046,972	+				-2.4
5,046,976	+				-1.6
5,046,981	-				-0.3
5,046,986	+				+1.2
5,046,989	-				+0.5
5,046,989	-				-0.2
5,046,994	-				-1.7
5,046,994	-				-0.5
5,047,037	+		GFF5050	0.13	+0.1
5,047,069	+		GFF5050	0.17	-2.2
5,047,077	-		GFF5050	0.19	-0.7
5,047,078	-		GFF5050	0.19	-0.6
5,047,081	+		GFF5050	0.19	+0.0
5,047,142	+		GFF5050	0.28	-0.2
5,047,157	+		GFF5050	0.30	-1.6
5,047,157	+		GFF5050	0.30	-0.6
5,047,158	-		GFF5050	0.30	-1.5
5,047,165	-		GFF5050	0.31	-0.3
5,047,167	+		GFF5050	0.31	-1.5
5,047,167	+		GFF5050	0.31	-0.7
5,047,167	+		GFF5050	0.31	-1.6
5,047,169	+		GFF5050	0.32	-1.8
5,047,174	+		GFF5050	0.32	-0.4
5,047,183	+		GFF5050	0.34	-1.8
5,047,183	+		GFF5050	0.34	-1.6
5,047,192	+		GFF5050	0.35	-2.8
5,047,192	+		GFF5050	0.35	+0.6
5,047,192	+		GFF5050	0.35	-1.9
5,047,193	+		GFF5050	0.35	-0.0
5,047,193	+		GFF5050	0.35	-0.9
5,047,193	+		GFF5050	0.35	-1.8
5,047,193	+		GFF5050	0.35	+0.9
5,047,206	-		GFF5050	0.37	-1.3
5,047,206	-		GFF5050	0.37	-0.2
5,047,206	-		GFF5050	0.37	-0.8
5,047,206	-		GFF5050	0.37	-0.6
5,047,214	+		GFF5050	0.38	-0.4
5,047,214	+		GFF5050	0.38	+0.1
5,047,214	+		GFF5050	0.38	-0.0
5,047,222	-		GFF5050	0.39	+0.3
5,047,233	+		GFF5050	0.41	-0.9
5,047,237	-		GFF5050	0.41	-0.8
5,047,246	-		GFF5050	0.43	+0.3
5,047,247	-		GFF5050	0.43	+0.4
5,047,248	-		GFF5050	0.43	+0.4
5,047,253	+		GFF5050	0.44	-0.3
5,047,275	-		GFF5050	0.47	-0.6
5,047,285	-		GFF5050	0.48	-0.5
5,047,291	+		GFF5050	0.49	-1.4
5,047,291	+		GFF5050	0.49	+0.1
5,047,299	-		GFF5050	0.50	-1.1
5,047,299	-		GFF5050	0.50	+0.4
5,047,299	-		GFF5050	0.50	+0.2
5,047,299	-		GFF5050	0.50	-2.6
5,047,301	+		GFF5050	0.51	-0.4
5,047,301	+		GFF5050	0.51	-0.8
5,047,301	+		GFF5050	0.51	-2.0
5,047,301	+		GFF5050	0.51	-1.8
5,047,301	+		GFF5050	0.51	-0.2
5,047,354	-		GFF5050	0.58	+0.1
5,047,355	+		GFF5050	0.58	-2.6
5,047,356	-		GFF5050	0.59	-1.3
5,047,363	-		GFF5050	0.60	-0.0
5,047,363	-		GFF5050	0.60	-3.2
5,047,370	-		GFF5050	0.61	-0.9
5,047,384	+		GFF5050	0.63	-0.8
5,047,399	-		GFF5050	0.65	-2.1
5,047,400	+		GFF5050	0.65	+0.2
5,047,423	-		GFF5050	0.68	-0.5
5,047,423	-		GFF5050	0.68	-1.3
5,047,423	-		GFF5050	0.68	+0.7
5,047,438	+		GFF5050	0.70	+1.0
5,047,466	-		GFF5050	0.74	-0.9
5,047,481	-		GFF5050	0.76	-0.2
5,047,506	+		GFF5050	0.80	+1.0
5,047,506	+		GFF5050	0.80	-1.5
5,047,506	+		GFF5050	0.80	+0.7
5,047,510	+		GFF5050	0.81	+1.3
5,047,514	-		GFF5050	0.81	+0.2
5,047,529	+		GFF5050	0.83	-1.8
5,047,537	-		GFF5050	0.84	+0.5
5,047,542	-		GFF5050	0.85	+0.6
5,047,544	+		GFF5050	0.85	+0.0
5,047,544	+		GFF5050	0.85	+1.0
5,047,544	+		GFF5050	0.85	-0.2
5,047,552	-		GFF5050	0.87	-0.6
5,047,552	-		GFF5050	0.87	+0.7
5,047,558	-		GFF5050	0.87	+0.2
5,047,581	+				-2.2
5,047,589	-				+0.9
5,047,607	+				-0.2
5,047,638	-				-1.5
5,047,652	+				-0.2
5,047,654	+				+0.5
5,047,654	+				+0.3
5,047,654	+				-0.5
5,047,654	+				-1.5
5,047,654	-				-2.0
5,047,660	-				-0.9
5,047,662	-				+0.0
5,047,662	-				-0.3
5,047,692	+				-0.4
5,047,692	+				+0.4
5,047,692	+				+0.4
5,047,700	-				+0.4
5,047,700	-				+0.4
5,047,700	-				+0.1
5,047,742	-				+0.4
5,047,772	+				-1.0
5,047,775	-				-0.4
5,047,780	-				-1.3
5,047,787	+				-2.4
5,047,797	+				+1.2
5,047,810	-				+1.0
5,047,823	-				-0.8
5,047,823	-				-0.2
5,047,839	+		GFF5051	0.15	-1.5
5,047,851	+		GFF5051	0.18	+1.0
5,047,851	+		GFF5051	0.18	+0.7
5,047,885	-		GFF5051	0.29	-0.8
5,047,897	+		GFF5051	0.33	+0.1
5,047,914	+		GFF5051	0.38	-1.4
5,047,922	-		GFF5051	0.40	-0.6
5,047,939	-		GFF5051	0.46	-0.1
5,047,979	-		GFF5051	0.58	+0.4
5,047,979	-		GFF5051	0.58	+0.2
5,047,981	-		GFF5051	0.59	-0.4
5,047,986	-		GFF5051	0.60	-0.9
5,048,052	-		GFF5051	0.81	-0.9
5,048,059	+		GFF5051	0.83	+0.4
5,048,059	+		GFF5051	0.83	+0.7
5,048,064	+		GFF5051	0.85	-0.8
5,048,064	+		GFF5051	0.85	-1.5
5,048,064	+		GFF5051	0.85	+0.7
5,048,064	+		GFF5051	0.85	+0.4
5,048,064	+		GFF5051	0.85	-1.6
5,048,064	+		GFF5051	0.85	-2.1
5,048,064	+		GFF5051	0.85	-2.0
5,048,064	+		GFF5051	0.85	-1.3
5,048,065	+		GFF5051	0.85	+1.1
5,048,065	+		GFF5051	0.85	-1.3
5,048,067	+		GFF5051	0.86	-0.2
5,048,072	-		GFF5051	0.87	-0.3
5,048,072	-		GFF5051	0.87	-0.7
5,048,072	-		GFF5051	0.87	-0.3
5,048,072	-		GFF5051	0.87	-0.3
5,048,073	-		GFF5051	0.88	-0.4
5,048,073	-		GFF5051	0.88	-0.8
5,048,073	-		GFF5051	0.88	-1.2
5,048,073	-		GFF5051	0.88	-1.8
5,048,136	+				+0.6
5,048,139	-				+0.7
5,048,144	-				-1.6
5,048,145	-				-1.0
5,048,147	+				-0.0
5,048,162	+				-0.0
5,048,163	-				-0.9
5,048,163	-				-2.6
5,048,163	-				-0.9
5,048,175	+				-1.5
5,048,178	-				-1.1
5,048,180	+				+0.5
5,048,237	+		GFF5052	0.11	-0.8
5,048,240	-		GFF5052	0.11	-1.9
5,048,252	+		GFF5052	0.12	-0.5
5,048,274	-		GFF5052	0.15	-0.6
5,048,275	+		GFF5052	0.15	+1.4
5,048,275	+		GFF5052	0.15	-1.4
5,048,280	+		GFF5052	0.15	-0.1
5,048,298	+		GFF5052	0.17	+0.2
5,048,298	+		GFF5052	0.17	-2.3
5,048,298	+		GFF5052	0.17	-0.6
5,048,298	+		GFF5052	0.17	-1.0
5,048,298	+		GFF5052	0.17	-0.4
5,048,298	+		GFF5052	0.17	+0.9
5,048,298	+		GFF5052	0.17	-0.7
5,048,298	+		GFF5052	0.17	-2.1
5,048,298	+		GFF5052	0.17	-0.2
5,048,298	+		GFF5052	0.17	-0.8
5,048,298	+		GFF5052	0.17	+0.1
5,048,298	+		GFF5052	0.17	-1.9
5,048,306	-		GFF5052	0.18	+0.2
5,048,306	-		GFF5052	0.18	-1.5
5,048,306	-		GFF5052	0.18	-1.0
5,048,306	-		GFF5052	0.18	-0.8
5,048,306	-		GFF5052	0.18	+0.3
5,048,306	-		GFF5052	0.18	-1.1
5,048,306	-		GFF5052	0.18	+0.5
5,048,306	-		GFF5052	0.18	+0.2
5,048,308	-		GFF5052	0.19	-0.1
5,048,317	+		GFF5052	0.20	+0.4
5,048,325	-		GFF5052	0.20	-0.0
5,048,325	-		GFF5052	0.20	-2.3
5,048,325	-		GFF5052	0.20	-1.6
5,048,359	-		GFF5052	0.24	+1.3
5,048,363	-		GFF5052	0.25	-0.7
5,048,385	-		GFF5052	0.27	-0.6
5,048,385	-		GFF5052	0.27	-1.0
5,048,390	+		GFF5052	0.28	-1.0
5,048,390	+		GFF5052	0.28	-2.8
5,048,390	-		GFF5052	0.28	-1.1
5,048,390	-		GFF5052	0.28	+0.2
5,048,390	-		GFF5052	0.28	-1.9
5,048,398	+		GFF5052	0.29	+0.2
5,048,406	-		GFF5052	0.29	-2.0
5,048,407	-		GFF5052	0.30	-0.7
5,048,417	+		GFF5052	0.31	-0.3
5,048,422	+		GFF5052	0.31	-0.4
5,048,422	+		GFF5052	0.31	-3.1
5,048,422	+		GFF5052	0.31	-0.4
5,048,427	+		GFF5052	0.32	-1.6
5,048,430	-		GFF5052	0.32	-1.5
5,048,445	+		GFF5052	0.34	+0.8
5,048,462	+		GFF5052	0.36	-0.4
5,048,462	+		GFF5052	0.36	+0.4
5,048,465	-		GFF5052	0.36	-0.2
5,048,470	-		GFF5052	0.37	-0.6
5,048,502	+		GFF5052	0.40	-1.2
5,048,520	+		GFF5052	0.42	+0.2
5,048,520	+		GFF5052	0.42	-0.4
5,048,525	+		GFF5052	0.43	-0.1
5,048,525	+		GFF5052	0.43	-3.2
5,048,525	+		GFF5052	0.43	-0.2
5,048,525	+		GFF5052	0.43	-0.8
5,048,525	+		GFF5052	0.43	-1.1
5,048,528	-		GFF5052	0.43	+0.2
5,048,528	-		GFF5052	0.43	-1.6
5,048,533	-		GFF5052	0.44	+0.5
5,048,533	-		GFF5052	0.44	-0.4
5,048,533	-		GFF5052	0.44	+1.5
5,048,533	-		GFF5052	0.44	+0.2
5,048,538	-		GFF5052	0.44	-1.9
5,048,561	-		GFF5052	0.47	+0.9
5,048,563	+		GFF5052	0.47	+0.7
5,048,579	+		GFF5052	0.49	-3.2
5,048,586	+		GFF5052	0.49	-0.8
5,048,630	-		GFF5052	0.54	-1.3
5,048,630	-		GFF5052	0.54	-1.1
5,048,630	-		GFF5052	0.54	+1.2