Strain Fitness in Sphingobium sp. HT1-2 around GFF4940

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,930,077	+				-0.2
4,930,077	+				-0.2
4,930,085	-				-1.2
4,930,100	-				-0.5
4,930,157	+				-1.6
4,930,191	+		GFF4938	0.10	-1.4
4,930,191	+		GFF4938	0.10	-1.7
4,930,198	+		GFF4938	0.11	-0.3
4,930,199	-		GFF4938	0.11	-1.0
4,930,199	-		GFF4938	0.11	+0.1
4,930,200	-		GFF4938	0.12	-1.9
4,930,249	+		GFF4938	0.18	-1.5
4,930,270	+		GFF4938	0.21	-1.4
4,930,270	+		GFF4938	0.21	-0.8
4,930,270	+		GFF4938	0.21	-1.8
4,930,278	-		GFF4938	0.22	-0.1
4,930,278	-		GFF4938	0.22	-1.9
4,930,308	-		GFF4938	0.25	+0.6
4,930,313	-		GFF4938	0.26	+0.3
4,930,328	+		GFF4938	0.28	-0.2
4,930,333	-		GFF4938	0.29	-0.4
4,930,335	+		GFF4938	0.29	-2.0
4,930,350	-		GFF4938	0.31	-1.6
4,930,370	+		GFF4938	0.33	-0.4
4,930,389	+		GFF4938	0.36	-1.7
4,930,389	+		GFF4938	0.36	-0.7
4,930,394	-		GFF4938	0.36	-0.5
4,930,397	-		GFF4938	0.37	-1.0
4,930,424	-		GFF4938	0.40	+0.3
4,930,424	-		GFF4938	0.40	-0.7
4,930,447	+		GFF4938	0.43	-1.1
4,930,453	-		GFF4938	0.44	-2.4
4,930,453	-		GFF4938	0.44	+0.3
4,930,455	+		GFF4938	0.44	-0.3
4,930,455	+		GFF4938	0.44	-0.4
4,930,456	+		GFF4938	0.44	+0.6
4,930,458	-		GFF4938	0.45	-1.3
4,930,464	-		GFF4938	0.45	-1.3
4,930,511	+		GFF4938	0.51	-2.0
4,930,524	+		GFF4938	0.53	-0.8
4,930,527	-		GFF4938	0.53	-1.1
4,930,537	-		GFF4938	0.55	-1.8
4,930,539	+		GFF4938	0.55	-1.6
4,930,578	+		GFF4938	0.60	-1.1
4,930,578	+		GFF4938	0.60	-1.1
4,930,578	+		GFF4938	0.60	-0.6
4,930,586	-		GFF4938	0.61	-1.7
4,930,586	-		GFF4938	0.61	-0.7
4,930,586	-		GFF4938	0.61	-1.9
4,930,592	-		GFF4938	0.62	-0.7
4,930,600	-		GFF4938	0.63	-0.6
4,930,603	+		GFF4938	0.63	-2.2
4,930,611	-		GFF4938	0.64	-0.0
4,930,621	+		GFF4938	0.65	-0.9
4,930,621	+		GFF4938	0.65	-0.2
4,930,621	+		GFF4938	0.65	-0.1
4,930,621	+		GFF4938	0.65	-0.6
4,930,624	-		GFF4938	0.66	+0.6
4,930,629	-		GFF4938	0.66	-1.4
4,930,629	-		GFF4938	0.66	-0.2
4,930,629	-		GFF4938	0.66	-0.3
4,930,629	-		GFF4938	0.66	-0.5
4,930,629	-		GFF4938	0.66	-1.7
4,930,683	+		GFF4938	0.73	-1.6
4,930,694	+		GFF4938	0.75	-2.1
4,930,694	+		GFF4938	0.75	+0.4
4,930,702	-		GFF4938	0.76	-1.9
4,930,710	-		GFF4938	0.77	+0.5
4,930,710	-		GFF4938	0.77	-1.3
4,930,713	+		GFF4938	0.77	-0.3
4,930,713	+		GFF4938	0.77	-0.6
4,930,713	+		GFF4938	0.77	-0.6
4,930,713	-		GFF4938	0.77	-0.4
4,930,718	+		GFF4938	0.78	-0.5
4,930,726	-		GFF4938	0.79	-1.6
4,930,763	+		GFF4938	0.84	+0.1
4,930,782	-		GFF4938	0.86	-0.0
4,930,790	-		GFF4938	0.87	-1.0
4,930,793	+		GFF4938	0.87	+0.5
4,930,806	-		GFF4938	0.89	-1.0
4,930,810	-		GFF4938	0.90	-0.6
4,930,823	-				+0.2
4,930,837	-				-2.4
4,930,857	+				-0.4
4,930,865	-				+0.8
4,930,870	-				-1.2
4,930,870	-				-0.9
4,930,875	+				-1.2
4,930,875	+				-0.5
4,930,875	+				+0.4
4,930,875	+				-1.0
4,930,875	+				-0.0
4,930,875	+				-0.9
4,930,875	+				-0.2
4,930,875	+				-0.9
4,930,875	+				+0.1
4,930,875	+				-0.0
4,930,875	+				-1.8
4,930,878	-				-1.7
4,930,880	+				+0.2
4,930,883	-				-0.9
4,930,883	-				-0.9
4,930,883	-				-2.4
4,930,883	-				-1.9
4,930,883	-				-0.7
4,930,883	-				-1.0
4,930,883	-				-0.6
4,930,886	-				+0.4
4,930,891	+				-2.9
4,930,893	-				-2.9
4,930,893	-				-0.2
4,930,899	-				-0.7
4,930,919	+		GFF4939	0.20	-2.1
4,930,920	+		GFF4939	0.21	-0.2
4,930,920	+		GFF4939	0.21	-0.1
4,930,921	+		GFF4939	0.21	+0.0
4,930,928	-		GFF4939	0.26	-0.6
4,930,928	-		GFF4939	0.26	-0.8
4,930,929	-		GFF4939	0.26	+0.3
4,930,939	+		GFF4939	0.33	+0.6
4,930,962	+		GFF4939	0.47	-1.1
4,930,967	+		GFF4939	0.51	+0.1
4,930,967	+		GFF4939	0.51	-0.6
4,930,967	+		GFF4939	0.51	-0.3
4,930,967	+		GFF4939	0.51	-1.1
4,930,967	+		GFF4939	0.51	-0.6
4,930,967	+		GFF4939	0.51	-1.8
4,930,967	+		GFF4939	0.51	+0.3
4,930,967	+		GFF4939	0.51	-0.4
4,930,975	-		GFF4939	0.56	-0.8
4,930,975	-		GFF4939	0.56	-0.2
4,930,999	+		GFF4939	0.71	-0.6
4,931,005	-		GFF4939	0.75	+0.8
4,931,007	-		GFF4939	0.76	-1.0
4,931,016	+		GFF4939	0.82	+0.8
4,931,026	+		GFF4939	0.88	-1.5
4,931,026	+		GFF4939	0.88	-0.1
4,931,036	+				-1.4
4,931,036	-				-0.8
4,931,051	-				-2.2
4,931,070	-				-1.2
4,931,073	+				-1.0
4,931,073	+				-1.1
4,931,107	+		GFF4940	0.22	-2.1
4,931,107	+		GFF4940	0.22	-2.5
4,931,107	+		GFF4940	0.22	-2.4
4,931,107	+		GFF4940	0.22	-0.5
4,931,107	+		GFF4940	0.22	-1.7
4,931,107	+		GFF4940	0.22	-2.1
4,931,107	+		GFF4940	0.22	-0.3
4,931,107	+		GFF4940	0.22	-1.8
4,931,107	+		GFF4940	0.22	+0.5
4,931,110	-		GFF4940	0.24	-0.6
4,931,110	-		GFF4940	0.24	+0.3
4,931,112	+		GFF4940	0.25	-1.3
4,931,115	-		GFF4940	0.28	-2.7
4,931,115	-		GFF4940	0.28	+0.1
4,931,115	-		GFF4940	0.28	+0.3
4,931,115	-		GFF4940	0.28	-0.1
4,931,115	-		GFF4940	0.28	-1.5
4,931,115	-		GFF4940	0.28	-1.3
4,931,115	-		GFF4940	0.28	-1.2
4,931,115	-		GFF4940	0.28	+0.7
4,931,115	-		GFF4940	0.28	-1.5
4,931,115	-		GFF4940	0.28	-0.9
4,931,115	-		GFF4940	0.28	-1.6
4,931,115	-		GFF4940	0.28	+0.7
4,931,115	-		GFF4940	0.28	-1.4
4,931,120	-		GFF4940	0.31	-1.5
4,931,122	+		GFF4940	0.33	-0.1
4,931,125	-		GFF4940	0.35	-1.0
4,931,132	-		GFF4940	0.40	+0.4
4,931,199	-		GFF4940	0.88	-0.9
4,931,409	+				+0.4
4,931,418	-				-0.9
4,931,428	-				+0.6
4,931,461	-				-0.3
4,931,461	-				-0.2
4,931,461	-				-0.3
4,931,497	+				-1.4
4,931,519	-				-1.7
4,931,542	-		GFF4941	0.10	-0.4
4,931,542	-		GFF4941	0.10	-0.5
4,931,620	+		GFF4941	0.18	-0.2
4,931,625	+		GFF4941	0.19	-2.4
4,931,630	+		GFF4941	0.19	+1.2
4,931,638	-		GFF4941	0.20	-0.8
4,931,638	-		GFF4941	0.20	+0.7
4,931,657	-		GFF4941	0.22	-2.6
4,931,677	+		GFF4941	0.24	+0.2
4,931,677	+		GFF4941	0.24	+0.6
4,931,685	-		GFF4941	0.25	-0.0
4,931,685	-		GFF4941	0.25	+0.4
4,931,685	-		GFF4941	0.25	-0.8
4,931,721	-		GFF4941	0.28	-1.0
4,931,755	-		GFF4941	0.32	-0.4
4,931,805	-		GFF4941	0.37	-0.2
4,931,812	+		GFF4941	0.37	+0.2
4,931,814	+		GFF4941	0.37	+1.0
4,931,884	+		GFF4941	0.44	-2.4
4,931,884	+		GFF4941	0.44	+0.5
4,931,885	-		GFF4941	0.45	-0.7
4,931,892	-		GFF4941	0.45	-1.7
4,931,899	+		GFF4941	0.46	+0.8
4,931,901	+		GFF4941	0.46	+0.1
4,931,903	+		GFF4941	0.46	+0.3
4,931,907	-		GFF4941	0.47	-0.1
4,931,907	-		GFF4941	0.47	-1.0
4,931,910	+		GFF4941	0.47	-1.1
4,931,910	+		GFF4941	0.47	+1.2
4,931,918	-		GFF4941	0.48	+0.2
4,931,918	-		GFF4941	0.48	-0.1
4,931,921	+		GFF4941	0.48	-1.2
4,931,962	+		GFF4941	0.52	-0.3
4,931,962	+		GFF4941	0.52	+0.2
4,931,962	+		GFF4941	0.52	-0.3
4,931,970	-		GFF4941	0.53	-0.8
4,931,985	+		GFF4941	0.54	-0.5
4,931,998	+		GFF4941	0.56	-1.1
4,932,023	-		GFF4941	0.58	-0.9
4,932,123	+		GFF4941	0.68	-1.5
4,932,123	+		GFF4941	0.68	-1.5
4,932,128	+		GFF4941	0.69	+0.1
4,932,128	+		GFF4941	0.69	-1.2
4,932,132	-		GFF4941	0.69	-0.8
4,932,148	+		GFF4941	0.71	-2.8
4,932,162	-		GFF4941	0.72	+0.4
4,932,182	+		GFF4941	0.74	-2.2
4,932,192	+		GFF4941	0.75	-2.4
4,932,192	-		GFF4941	0.75	-1.5
4,932,192	-		GFF4941	0.75	-0.6
4,932,210	-		GFF4941	0.77	-0.0
4,932,210	-		GFF4941	0.77	+0.1