Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF492 and GFF493 are separated by 25 nucleotides GFF493 and GFF494 are separated by 451 nucleotides GFF494 and GFF495 overlap by 8 nucleotides
GFF492 - Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4), at 490,959 to 491,450
GFF492
GFF493 - hypothetical protein, at 491,476 to 491,706
GFF493
GFF494 - GAF domain/GGDEF domain/EAL domain protein, at 492,158 to 493,675
GFF494
GFF495 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7), at 493,668 to 494,951
GFF495
Position (kb) 492
493
494 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 491.205 kb on - strand, within GFF492 at 491.223 kb on - strand, within GFF492 at 491.233 kb on - strand, within GFF492 at 491.243 kb on - strand, within GFF492 at 491.316 kb on + strand, within GFF492 at 491.317 kb on + strand, within GFF492 at 491.321 kb on + strand, within GFF492 at 491.333 kb on + strand, within GFF492 at 491.410 kb on + strand at 491.425 kb on + strand at 491.433 kb on - strand at 491.440 kb on - strand at 491.449 kb on + strand at 491.458 kb on + strand at 491.477 kb on + strand at 491.487 kb on + strand at 491.487 kb on + strand at 491.488 kb on + strand at 491.491 kb on - strand at 491.520 kb on - strand, within GFF493 at 491.522 kb on - strand, within GFF493 at 491.532 kb on + strand, within GFF493 at 491.533 kb on - strand, within GFF493 at 491.535 kb on - strand, within GFF493 at 491.539 kb on - strand, within GFF493 at 491.552 kb on + strand, within GFF493 at 491.552 kb on + strand, within GFF493 at 491.560 kb on - strand, within GFF493 at 491.560 kb on - strand, within GFF493 at 491.560 kb on - strand, within GFF493 at 491.570 kb on - strand, within GFF493 at 491.581 kb on + strand, within GFF493 at 491.630 kb on + strand, within GFF493 at 491.633 kb on - strand, within GFF493 at 491.633 kb on - strand, within GFF493 at 491.670 kb on - strand, within GFF493 at 491.672 kb on - strand, within GFF493 at 491.674 kb on + strand, within GFF493 at 491.674 kb on + strand, within GFF493 at 491.674 kb on + strand, within GFF493 at 491.682 kb on - strand, within GFF493 at 491.726 kb on + strand at 491.728 kb on + strand at 491.736 kb on - strand at 491.758 kb on + strand at 491.758 kb on + strand at 491.766 kb on - strand at 491.766 kb on - strand at 491.781 kb on - strand at 491.843 kb on - strand at 491.902 kb on + strand at 491.910 kb on - strand at 491.930 kb on + strand at 491.930 kb on + strand at 491.930 kb on + strand at 491.930 kb on + strand at 491.930 kb on + strand at 491.930 kb on + strand at 491.930 kb on + strand at 491.930 kb on + strand at 491.930 kb on + strand at 491.930 kb on + strand at 491.938 kb on - strand at 491.938 kb on - strand at 491.938 kb on - strand at 491.948 kb on - strand at 491.969 kb on + strand at 491.969 kb on + strand at 491.969 kb on + strand at 491.974 kb on + strand at 491.974 kb on + strand at 491.977 kb on - strand at 491.977 kb on - strand at 491.982 kb on - strand at 491.982 kb on - strand at 492.015 kb on + strand at 492.023 kb on - strand at 492.025 kb on + strand at 492.028 kb on - strand at 492.049 kb on + strand at 492.077 kb on + strand at 492.083 kb on - strand at 492.089 kb on + strand at 492.089 kb on + strand at 492.097 kb on - strand at 492.097 kb on - strand at 492.097 kb on - strand at 492.130 kb on + strand at 492.132 kb on + strand at 492.133 kb on - strand at 492.138 kb on - strand at 492.138 kb on - strand at 492.155 kb on + strand at 492.155 kb on + strand at 492.163 kb on - strand at 492.165 kb on + strand at 492.173 kb on - strand at 492.173 kb on - strand at 492.212 kb on + strand at 492.214 kb on + strand at 492.214 kb on + strand at 492.214 kb on + strand at 492.222 kb on - strand at 492.222 kb on - strand at 492.228 kb on - strand at 492.241 kb on - strand at 492.265 kb on + strand at 492.265 kb on + strand at 492.265 kb on + strand at 492.265 kb on + strand at 492.273 kb on - strand at 492.273 kb on - strand at 492.273 kb on - strand at 492.273 kb on - strand at 492.293 kb on + strand at 492.299 kb on + strand at 492.301 kb on - strand at 492.301 kb on - strand at 492.301 kb on - strand at 492.324 kb on - strand, within GFF494 at 492.324 kb on - strand, within GFF494 at 492.324 kb on - strand, within GFF494 at 492.327 kb on + strand, within GFF494 at 492.335 kb on + strand, within GFF494 at 492.335 kb on + strand, within GFF494 at 492.337 kb on + strand, within GFF494 at 492.337 kb on + strand, within GFF494 at 492.337 kb on + strand, within GFF494 at 492.337 kb on + strand, within GFF494 at 492.337 kb on + strand, within GFF494 at 492.337 kb on + strand, within GFF494 at 492.337 kb on + strand, within GFF494 at 492.337 kb on + strand, within GFF494 at 492.337 kb on + strand, within GFF494 at 492.337 kb on + strand, within GFF494 at 492.345 kb on - strand, within GFF494 at 492.345 kb on - strand, within GFF494 at 492.345 kb on - strand, within GFF494 at 492.345 kb on - strand, within GFF494 at 492.355 kb on + strand, within GFF494 at 492.360 kb on + strand, within GFF494 at 492.360 kb on + strand, within GFF494 at 492.360 kb on + strand, within GFF494 at 492.363 kb on - strand, within GFF494 at 492.367 kb on - strand, within GFF494 at 492.368 kb on - strand, within GFF494 at 492.370 kb on + strand, within GFF494 at 492.372 kb on - strand, within GFF494 at 492.375 kb on + strand, within GFF494 at 492.375 kb on + strand, within GFF494 at 492.383 kb on - strand, within GFF494 at 492.383 kb on - strand, within GFF494 at 492.402 kb on + strand, within GFF494 at 492.403 kb on - strand, within GFF494 at 492.410 kb on - strand, within GFF494 at 492.432 kb on + strand, within GFF494 at 492.442 kb on - strand, within GFF494 at 492.522 kb on - strand, within GFF494 at 492.618 kb on - strand, within GFF494 at 492.632 kb on - strand, within GFF494 at 492.678 kb on - strand, within GFF494 at 492.679 kb on - strand, within GFF494 at 492.709 kb on + strand, within GFF494 at 492.709 kb on + strand, within GFF494 at 492.751 kb on + strand, within GFF494 at 492.751 kb on + strand, within GFF494 at 492.765 kb on + strand, within GFF494 at 492.765 kb on + strand, within GFF494 at 492.775 kb on + strand, within GFF494 at 492.775 kb on + strand, within GFF494 at 492.775 kb on + strand, within GFF494 at 492.783 kb on - strand, within GFF494 at 492.783 kb on - strand, within GFF494 at 492.838 kb on - strand, within GFF494 at 492.841 kb on + strand, within GFF494 at 492.938 kb on - strand, within GFF494 at 492.963 kb on + strand, within GFF494 at 492.963 kb on + strand, within GFF494 at 492.963 kb on + strand, within GFF494 at 492.963 kb on + strand, within GFF494 at 492.963 kb on + strand, within GFF494 at 492.968 kb on + strand, within GFF494 at 492.970 kb on - strand, within GFF494 at 492.971 kb on - strand, within GFF494 at 492.971 kb on - strand, within GFF494 at 492.971 kb on - strand, within GFF494 at 492.971 kb on - strand, within GFF494 at 492.971 kb on - strand, within GFF494 at 492.971 kb on - strand, within GFF494 at 492.971 kb on - strand, within GFF494 at 492.971 kb on - strand, within GFF494 at 492.981 kb on + strand, within GFF494 at 492.981 kb on - strand, within GFF494 at 492.981 kb on - strand, within GFF494 at 492.989 kb on - strand, within GFF494 at 492.994 kb on - strand, within GFF494 at 492.994 kb on - strand, within GFF494 at 492.995 kb on + strand, within GFF494 at 492.995 kb on + strand, within GFF494 at 493.039 kb on + strand, within GFF494 at 493.039 kb on + strand, within GFF494 at 493.039 kb on + strand, within GFF494 at 493.039 kb on + strand, within GFF494 at 493.039 kb on + strand, within GFF494 at 493.039 kb on + strand, within GFF494 at 493.039 kb on + strand, within GFF494 at 493.039 kb on + strand, within GFF494 at 493.042 kb on - strand, within GFF494 at 493.047 kb on - strand, within GFF494 at 493.047 kb on - strand, within GFF494 at 493.047 kb on - strand, within GFF494 at 493.047 kb on - strand, within GFF494 at 493.047 kb on - strand, within GFF494 at 493.047 kb on - strand, within GFF494 at 493.047 kb on - strand, within GFF494 at 493.047 kb on - strand, within GFF494 at 493.047 kb on - strand, within GFF494 at 493.047 kb on - strand, within GFF494 at 493.084 kb on + strand, within GFF494 at 493.106 kb on - strand, within GFF494 at 493.110 kb on + strand, within GFF494 at 493.110 kb on + strand, within GFF494 at 493.110 kb on + strand, within GFF494 at 493.110 kb on + strand, within GFF494 at 493.110 kb on + strand, within GFF494 at 493.110 kb on + strand, within GFF494 at 493.117 kb on - strand, within GFF494 at 493.118 kb on - strand, within GFF494 at 493.118 kb on - strand, within GFF494 at 493.118 kb on - strand, within GFF494 at 493.118 kb on - strand, within GFF494 at 493.118 kb on - strand, within GFF494 at 493.130 kb on - strand, within GFF494 at 493.177 kb on - strand, within GFF494 at 493.215 kb on + strand, within GFF494 at 493.253 kb on - strand, within GFF494 at 493.262 kb on + strand, within GFF494 at 493.262 kb on + strand, within GFF494 at 493.267 kb on + strand, within GFF494 at 493.270 kb on - strand, within GFF494 at 493.279 kb on + strand, within GFF494 at 493.284 kb on + strand, within GFF494 at 493.292 kb on - strand, within GFF494 at 493.292 kb on - strand, within GFF494 at 493.301 kb on - strand, within GFF494 at 493.323 kb on + strand, within GFF494 at 493.331 kb on - strand, within GFF494 at 493.341 kb on + strand, within GFF494 at 493.368 kb on + strand, within GFF494 at 493.376 kb on - strand, within GFF494 at 493.376 kb on - strand, within GFF494 at 493.376 kb on - strand, within GFF494 at 493.376 kb on - strand, within GFF494 at 493.378 kb on + strand, within GFF494 at 493.418 kb on - strand, within GFF494 at 493.419 kb on - strand, within GFF494 at 493.439 kb on + strand, within GFF494 at 493.445 kb on + strand, within GFF494 at 493.452 kb on - strand, within GFF494 at 493.457 kb on + strand, within GFF494 at 493.457 kb on + strand, within GFF494 at 493.465 kb on - strand, within GFF494 at 493.465 kb on - strand, within GFF494 at 493.465 kb on - strand, within GFF494 at 493.484 kb on - strand, within GFF494 at 493.491 kb on + strand, within GFF494 at 493.491 kb on + strand, within GFF494 at 493.499 kb on - strand, within GFF494 at 493.524 kb on - strand at 493.524 kb on - strand at 493.524 kb on - strand at 493.524 kb on - strand at 493.524 kb on - strand at 493.524 kb on - strand at 493.524 kb on - strand at 493.533 kb on + strand at 493.533 kb on + strand at 493.541 kb on - strand at 493.543 kb on - strand at 493.557 kb on + strand at 493.565 kb on - strand at 493.577 kb on + strand at 493.580 kb on + strand at 493.665 kb on + strand at 493.675 kb on + strand at 493.675 kb on + strand at 493.683 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate remove 491,205 - GFF492 0.50 +0.1 491,223 - GFF492 0.54 +0.3 491,233 - GFF492 0.56 +0.6 491,243 - GFF492 0.58 -1.3 491,316 + GFF492 0.73 +0.4 491,317 + GFF492 0.73 +0.0 491,321 + GFF492 0.74 -0.7 491,333 + GFF492 0.76 +1.2 491,410 + +0.1 491,425 + -2.1 491,433 - -0.5 491,440 - +0.4 491,449 + -0.2 491,458 + +0.8 491,477 + -1.6 491,487 + -0.2 491,487 + -1.5 491,488 + -1.4 491,491 - -2.1 491,520 - GFF493 0.19 +0.3 491,522 - GFF493 0.20 -1.3 491,532 + GFF493 0.24 -0.8 491,533 - GFF493 0.25 +0.2 491,535 - GFF493 0.26 -1.1 491,539 - GFF493 0.27 +0.0 491,552 + GFF493 0.33 +0.6 491,552 + GFF493 0.33 -0.8 491,560 - GFF493 0.36 -1.9 491,560 - GFF493 0.36 +0.3 491,560 - GFF493 0.36 -2.0 491,570 - GFF493 0.41 -1.6 491,581 + GFF493 0.45 +0.8 491,630 + GFF493 0.67 +0.0 491,633 - GFF493 0.68 +0.1 491,633 - GFF493 0.68 +0.6 491,670 - GFF493 0.84 -0.2 491,672 - GFF493 0.85 -0.4 491,674 + GFF493 0.86 -0.1 491,674 + GFF493 0.86 +0.5 491,674 + GFF493 0.86 -1.3 491,682 - GFF493 0.89 -0.2 491,726 + +0.8 491,728 + +0.0 491,736 - -0.8 491,758 + +1.4 491,758 + +0.9 491,766 - -2.1 491,766 - -0.8 491,781 - -1.4 491,843 - -0.5 491,902 + -1.3 491,910 - -0.1 491,930 + +0.2 491,930 + -0.4 491,930 + -0.3 491,930 + +0.8 491,930 + +0.6 491,930 + +0.4 491,930 + +0.2 491,930 + +0.7 491,930 + +0.0 491,930 + +0.2 491,938 - -1.5 491,938 - +0.2 491,938 - +0.7 491,948 - -0.3 491,969 + +0.2 491,969 + -0.5 491,969 + -2.1 491,974 + +0.6 491,974 + +0.7 491,977 - +1.6 491,977 - +0.2 491,982 - -0.8 491,982 - -0.5 492,015 + -0.8 492,023 - -0.6 492,025 + -1.9 492,028 - +0.8 492,049 + -0.4 492,077 + +0.8 492,083 - +0.9 492,089 + +1.3 492,089 + +0.6 492,097 - -2.1 492,097 - -0.6 492,097 - -0.8 492,130 + -1.4 492,132 + -0.7 492,133 - +1.0 492,138 - +0.0 492,138 - +0.1 492,155 + -0.8 492,155 + -0.6 492,163 - +0.2 492,165 + -1.6 492,173 - +1.5 492,173 - -1.9 492,212 + +0.3 492,214 + -0.4 492,214 + -0.1 492,214 + +0.3 492,222 - +0.6 492,222 - -2.5 492,228 - -0.6 492,241 - +0.7 492,265 + -1.1 492,265 + -1.3 492,265 + -0.8 492,265 + +0.2 492,273 - -0.1 492,273 - +0.5 492,273 - -1.3 492,273 - +0.7 492,293 + -0.7 492,299 + +1.0 492,301 - -0.9 492,301 - -0.1 492,301 - -1.4 492,324 - GFF494 0.11 +0.3 492,324 - GFF494 0.11 +0.4 492,324 - GFF494 0.11 +0.2 492,327 + GFF494 0.11 -0.3 492,335 + GFF494 0.12 +1.0 492,335 + GFF494 0.12 -1.1 492,337 + GFF494 0.12 -0.3 492,337 + GFF494 0.12 +0.7 492,337 + GFF494 0.12 +0.3 492,337 + GFF494 0.12 +0.3 492,337 + GFF494 0.12 -0.4 492,337 + GFF494 0.12 -0.4 492,337 + GFF494 0.12 -1.0 492,337 + GFF494 0.12 -0.8 492,337 + GFF494 0.12 +0.3 492,337 + GFF494 0.12 -0.6 492,345 - GFF494 0.12 -1.0 492,345 - GFF494 0.12 +0.0 492,345 - GFF494 0.12 -0.7 492,345 - GFF494 0.12 -0.9 492,355 + GFF494 0.13 -0.5 492,360 + GFF494 0.13 -0.4 492,360 + GFF494 0.13 -1.2 492,360 + GFF494 0.13 -1.2 492,363 - GFF494 0.14 +1.3 492,367 - GFF494 0.14 -2.0 492,368 - GFF494 0.14 +0.2 492,370 + GFF494 0.14 -1.9 492,372 - GFF494 0.14 -1.6 492,375 + GFF494 0.14 -0.6 492,375 + GFF494 0.14 +0.9 492,383 - GFF494 0.15 -1.3 492,383 - GFF494 0.15 -1.6 492,402 + GFF494 0.16 +0.1 492,403 - GFF494 0.16 -0.6 492,410 - GFF494 0.17 -1.5 492,432 + GFF494 0.18 +0.6 492,442 - GFF494 0.19 +0.8 492,522 - GFF494 0.24 -2.4 492,618 - GFF494 0.30 -3.0 492,632 - GFF494 0.31 +0.2 492,678 - GFF494 0.34 -0.4 492,679 - GFF494 0.34 +0.5 492,709 + GFF494 0.36 -0.4 492,709 + GFF494 0.36 -1.8 492,751 + GFF494 0.39 -0.7 492,751 + GFF494 0.39 +0.0 492,765 + GFF494 0.40 -0.6 492,765 + GFF494 0.40 -0.2 492,775 + GFF494 0.41 -1.1 492,775 + GFF494 0.41 -2.6 492,775 + GFF494 0.41 -0.5 492,783 - GFF494 0.41 -0.3 492,783 - GFF494 0.41 -1.1 492,838 - GFF494 0.45 -0.0 492,841 + GFF494 0.45 -0.5 492,938 - GFF494 0.51 +0.0 492,963 + GFF494 0.53 +0.0 492,963 + GFF494 0.53 +0.1 492,963 + GFF494 0.53 +0.5 492,963 + GFF494 0.53 -0.1 492,963 + GFF494 0.53 -1.4 492,968 + GFF494 0.53 -2.4 492,970 - GFF494 0.53 -1.4 492,971 - GFF494 0.54 +0.9 492,971 - GFF494 0.54 -0.3 492,971 - GFF494 0.54 -0.6 492,971 - GFF494 0.54 -0.1 492,971 - GFF494 0.54 -0.6 492,971 - GFF494 0.54 +0.4 492,971 - GFF494 0.54 -0.4 492,971 - GFF494 0.54 +0.4 492,981 + GFF494 0.54 -0.7 492,981 - GFF494 0.54 -0.3 492,981 - GFF494 0.54 -1.9 492,989 - GFF494 0.55 -1.1 492,994 - GFF494 0.55 +0.4 492,994 - GFF494 0.55 -0.7 492,995 + GFF494 0.55 +0.2 492,995 + GFF494 0.55 +0.0 493,039 + GFF494 0.58 +0.5 493,039 + GFF494 0.58 -1.9 493,039 + GFF494 0.58 -0.4 493,039 + GFF494 0.58 -0.5 493,039 + GFF494 0.58 +0.0 493,039 + GFF494 0.58 +1.2 493,039 + GFF494 0.58 +0.3 493,039 + GFF494 0.58 -1.6 493,042 - GFF494 0.58 -0.3 493,047 - GFF494 0.59 +1.2 493,047 - GFF494 0.59 -0.2 493,047 - GFF494 0.59 -1.3 493,047 - GFF494 0.59 -1.5 493,047 - GFF494 0.59 -0.6 493,047 - GFF494 0.59 +1.0 493,047 - GFF494 0.59 +0.6 493,047 - GFF494 0.59 -0.5 493,047 - GFF494 0.59 +0.9 493,047 - GFF494 0.59 -1.3 493,084 + GFF494 0.61 -1.9 493,106 - GFF494 0.62 -2.0 493,110 + GFF494 0.63 +0.0 493,110 + GFF494 0.63 -2.3 493,110 + GFF494 0.63 -0.3 493,110 + GFF494 0.63 +0.1 493,110 + GFF494 0.63 -2.3 493,110 + GFF494 0.63 -0.8 493,117 - GFF494 0.63 +0.2 493,118 - GFF494 0.63 +0.3 493,118 - GFF494 0.63 -0.3 493,118 - GFF494 0.63 +0.6 493,118 - GFF494 0.63 -0.2 493,118 - GFF494 0.63 +0.0 493,130 - GFF494 0.64 +0.5 493,177 - GFF494 0.67 +1.2 493,215 + GFF494 0.70 -1.2 493,253 - GFF494 0.72 +0.0 493,262 + GFF494 0.73 +1.3 493,262 + GFF494 0.73 -1.1 493,267 + GFF494 0.73 +1.3 493,270 - GFF494 0.73 +0.6 493,279 + GFF494 0.74 -1.1 493,284 + GFF494 0.74 +1.8 493,292 - GFF494 0.75 +1.2 493,292 - GFF494 0.75 -0.5 493,301 - GFF494 0.75 -0.9 493,323 + GFF494 0.77 -1.6 493,331 - GFF494 0.77 -1.8 493,341 + GFF494 0.78 -1.0 493,368 + GFF494 0.80 -1.6 493,376 - GFF494 0.80 +0.4 493,376 - GFF494 0.80 -1.2 493,376 - GFF494 0.80 +0.6 493,376 - GFF494 0.80 -1.2 493,378 + GFF494 0.80 +0.3 493,418 - GFF494 0.83 +1.0 493,419 - GFF494 0.83 -0.6 493,439 + GFF494 0.84 -0.1 493,445 + GFF494 0.85 -0.0 493,452 - GFF494 0.85 +0.8 493,457 + GFF494 0.86 -0.2 493,457 + GFF494 0.86 -1.8 493,465 - GFF494 0.86 -1.1 493,465 - GFF494 0.86 -0.7 493,465 - GFF494 0.86 -0.8 493,484 - GFF494 0.87 -0.2 493,491 + GFF494 0.88 -0.7 493,491 + GFF494 0.88 +0.1 493,499 - GFF494 0.88 +0.1 493,524 - -0.9 493,524 - -0.6 493,524 - -0.3 493,524 - -1.1 493,524 - +0.8 493,524 - +1.8 493,524 - -1.1 493,533 + -0.0 493,533 + -0.9 493,541 - -1.6 493,543 - +0.2 493,557 + +0.2 493,565 - +0.6 493,577 + -0.6 493,580 + +0.9 493,665 + +0.5 493,675 + -0.3 493,675 + +0.5 493,683 - -0.7
Or see this region's nucleotide sequence