Strain Fitness in Sphingobium sp. HT1-2 around GFF4926

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,916,992	+				-1.5
4,917,048	+				-0.6
4,917,048	-				-0.3
4,917,075	+		GFF4925	0.13	-1.9
4,917,075	+		GFF4925	0.13	-1.8
4,917,077	+		GFF4925	0.13	-0.3
4,917,083	-		GFF4925	0.13	-0.4
4,917,085	-		GFF4925	0.14	+0.8
4,917,106	+		GFF4925	0.16	-0.5
4,917,106	+		GFF4925	0.16	-0.3
4,917,114	-		GFF4925	0.17	-1.6
4,917,118	-		GFF4925	0.17	-0.2
4,917,139	+		GFF4925	0.19	+0.3
4,917,171	+		GFF4925	0.22	-1.4
4,917,197	-		GFF4925	0.25	+0.3
4,917,204	+		GFF4925	0.25	-0.2
4,917,210	-		GFF4925	0.26	-0.3
4,917,210	-		GFF4925	0.26	-0.4
4,917,210	-		GFF4925	0.26	-0.4
4,917,212	-		GFF4925	0.26	-1.1
4,917,221	+		GFF4925	0.27	+0.1
4,917,227	-		GFF4925	0.28	+1.0
4,917,234	-		GFF4925	0.28	-1.6
4,917,236	+		GFF4925	0.29	-0.9
4,917,236	+		GFF4925	0.29	-2.2
4,917,236	+		GFF4925	0.29	-1.3
4,917,236	+		GFF4925	0.29	+0.3
4,917,236	+		GFF4925	0.29	-0.9
4,917,236	+		GFF4925	0.29	-0.9
4,917,236	+		GFF4925	0.29	-1.4
4,917,236	+		GFF4925	0.29	+0.3
4,917,236	+		GFF4925	0.29	-1.6
4,917,236	+		GFF4925	0.29	+0.4
4,917,244	-		GFF4925	0.29	-0.6
4,917,244	-		GFF4925	0.29	+0.6
4,917,244	-		GFF4925	0.29	-0.3
4,917,244	-		GFF4925	0.29	+0.1
4,917,244	-		GFF4925	0.29	-1.5
4,917,244	-		GFF4925	0.29	-0.9
4,917,244	-		GFF4925	0.29	-0.6
4,917,246	-		GFF4925	0.30	-0.3
4,917,258	-		GFF4925	0.31	-2.0
4,917,267	+		GFF4925	0.32	-0.9
4,917,270	-		GFF4925	0.32	-1.7
4,917,284	+		GFF4925	0.33	+0.6
4,917,285	+		GFF4925	0.34	-1.1
4,917,307	+		GFF4925	0.36	-1.7
4,917,307	+		GFF4925	0.36	-2.1
4,917,307	+		GFF4925	0.36	-0.3
4,917,310	-		GFF4925	0.36	-1.9
4,917,315	-		GFF4925	0.37	-0.9
4,917,315	-		GFF4925	0.37	-0.8
4,917,315	-		GFF4925	0.37	-1.5
4,917,315	-		GFF4925	0.37	-0.5
4,917,315	-		GFF4925	0.37	-2.0
4,917,355	-		GFF4925	0.40	+0.8
4,917,373	+		GFF4925	0.42	-0.5
4,917,376	-		GFF4925	0.43	+0.5
4,917,391	-		GFF4925	0.44	-0.5
4,917,407	+		GFF4925	0.46	-1.6
4,917,409	+		GFF4925	0.46	+0.1
4,917,409	+		GFF4925	0.46	-1.0
4,917,409	+		GFF4925	0.46	-2.2
4,917,410	+		GFF4925	0.46	-0.6
4,917,417	-		GFF4925	0.47	-0.6
4,917,417	-		GFF4925	0.47	-1.4
4,917,417	-		GFF4925	0.47	-0.5
4,917,417	-		GFF4925	0.47	-0.1
4,917,417	-		GFF4925	0.47	-2.0
4,917,418	-		GFF4925	0.47	-3.1
4,917,418	-		GFF4925	0.47	+0.7
4,917,418	-		GFF4925	0.47	-0.7
4,917,418	-		GFF4925	0.47	+0.9
4,917,426	+		GFF4925	0.48	-0.1
4,917,426	+		GFF4925	0.48	-0.6
4,917,426	+		GFF4925	0.48	-0.1
4,917,431	+		GFF4925	0.48	+0.3
4,917,431	+		GFF4925	0.48	-2.4
4,917,434	-		GFF4925	0.48	-0.9
4,917,434	-		GFF4925	0.48	-0.2
4,917,434	-		GFF4925	0.48	-2.3
4,917,434	-		GFF4925	0.48	-0.9
4,917,439	-		GFF4925	0.49	-0.4
4,917,439	-		GFF4925	0.49	-0.3
4,917,439	-		GFF4925	0.49	-0.8
4,917,441	+		GFF4925	0.49	-0.1
4,917,449	-		GFF4925	0.50	-1.0
4,917,464	+		GFF4925	0.51	+1.5
4,917,472	-		GFF4925	0.52	-0.9
4,917,472	-		GFF4925	0.52	-3.0
4,917,508	+		GFF4925	0.56	-0.9
4,917,545	-		GFF4925	0.59	-2.1
4,917,553	-		GFF4925	0.60	+0.4
4,917,591	-		GFF4925	0.64	-0.8
4,917,620	-		GFF4925	0.67	-1.4
4,917,622	+		GFF4925	0.67	-0.5
4,917,629	-		GFF4925	0.68	-0.2
4,917,671	+		GFF4925	0.72	-0.9
4,917,702	+		GFF4925	0.75	-2.8
4,917,702	+		GFF4925	0.75	-1.1
4,917,702	-		GFF4925	0.75	-1.7
4,917,710	-		GFF4925	0.76	-0.6
4,917,710	-		GFF4925	0.76	-0.4
4,917,710	-		GFF4925	0.76	-0.3
4,917,727	-		GFF4925	0.78	+0.2
4,917,736	+		GFF4925	0.78	-0.2
4,917,736	+		GFF4925	0.78	-1.7
4,917,771	-		GFF4925	0.82	+0.3
4,917,773	+		GFF4925	0.82	-0.6
4,917,778	+		GFF4925	0.83	+0.1
4,917,779	-		GFF4925	0.83	+0.0
4,917,779	-		GFF4925	0.83	-1.7
4,917,779	-		GFF4925	0.83	-0.8
4,917,781	-		GFF4925	0.83	-1.3
4,917,786	-		GFF4925	0.83	-1.0
4,917,797	+		GFF4925	0.84	+1.3
4,917,826	+		GFF4925	0.87	+1.1
4,917,832	-		GFF4925	0.88	-1.0
4,917,834	-		GFF4925	0.88	-0.7
4,917,836	+		GFF4925	0.88	-0.6
4,917,836	+		GFF4925	0.88	+0.6
4,917,844	-		GFF4925	0.89	-1.5
4,917,844	-		GFF4925	0.89	-0.9
4,917,844	-		GFF4925	0.89	-0.3
4,917,844	-		GFF4925	0.89	-2.5
4,917,844	-		GFF4925	0.89	-0.6
4,917,855	-				+0.0
4,917,875	-				-1.0
4,917,892	-				-0.4
4,917,902	+				-0.5
4,917,907	+				-1.3
4,917,912	+				-0.0
4,917,912	+				-1.1
4,917,912	+				-0.4
4,917,914	+				+0.5
4,917,914	+				-1.8
4,917,914	+				-1.0
4,917,917	-				-0.1
4,917,922	-				-0.6
4,917,933	+				-1.4
4,917,941	-				+0.4
4,917,941	-				-1.7
4,917,970	+				-1.5
4,918,022	-				-0.2
4,918,022	-				+0.2
4,918,030	+				-0.4
4,918,043	-				-1.0
4,918,043	-				-2.4
4,918,043	-				-1.9
4,918,053	-				-0.6
4,918,060	-		GFF4926	0.10	+0.9
4,918,127	+		GFF4926	0.17	-0.9
4,918,163	+		GFF4926	0.21	-1.8
4,918,163	+		GFF4926	0.21	-1.0
4,918,163	+		GFF4926	0.21	-2.9
4,918,169	+		GFF4926	0.21	-2.2
4,918,171	-		GFF4926	0.22	-0.8
4,918,171	-		GFF4926	0.22	-0.2
4,918,171	-		GFF4926	0.22	+0.6
4,918,173	+		GFF4926	0.22	-0.2
4,918,179	+		GFF4926	0.22	-1.6
4,918,187	-		GFF4926	0.23	-2.0
4,918,188	-		GFF4926	0.23	-1.7
4,918,189	+		GFF4926	0.23	-1.2
4,918,189	+		GFF4926	0.23	-2.0
4,918,189	+		GFF4926	0.23	-0.6
4,918,189	+		GFF4926	0.23	-1.0
4,918,189	+		GFF4926	0.23	+0.1
4,918,189	+		GFF4926	0.23	-0.6
4,918,189	+		GFF4926	0.23	-0.7
4,918,189	+		GFF4926	0.23	-0.9
4,918,189	+		GFF4926	0.23	+0.4
4,918,189	+		GFF4926	0.23	-1.6
4,918,189	+		GFF4926	0.23	-0.1
4,918,189	+		GFF4926	0.23	-0.4
4,918,197	-		GFF4926	0.24	-0.2
4,918,197	-		GFF4926	0.24	+0.6
4,918,197	-		GFF4926	0.24	-1.2
4,918,197	-		GFF4926	0.24	-1.1
4,918,197	-		GFF4926	0.24	-0.4
4,918,197	-		GFF4926	0.24	-0.1
4,918,197	-		GFF4926	0.24	-1.7
4,918,197	-		GFF4926	0.24	-0.8
4,918,197	-		GFF4926	0.24	-2.2
4,918,210	-		GFF4926	0.26	-0.8
4,918,210	-		GFF4926	0.26	-1.4
4,918,215	-		GFF4926	0.26	-0.2
4,918,218	+		GFF4926	0.26	-0.6
4,918,218	+		GFF4926	0.26	+0.2
4,918,222	+		GFF4926	0.27	-3.8
4,918,225	-		GFF4926	0.27	-2.4
4,918,230	-		GFF4926	0.28	-1.0
4,918,241	-		GFF4926	0.29	-2.3
4,918,250	+		GFF4926	0.30	-0.2
4,918,255	+		GFF4926	0.30	-0.2
4,918,263	-		GFF4926	0.31	+0.1
4,918,265	+		GFF4926	0.31	-2.9
4,918,274	+		GFF4926	0.32	-0.6
4,918,282	-		GFF4926	0.33	+0.2
4,918,282	-		GFF4926	0.33	-0.1
4,918,282	-		GFF4926	0.33	-1.5
4,918,282	-		GFF4926	0.33	-0.7
4,918,308	+		GFF4926	0.36	-2.3
4,918,309	-		GFF4926	0.36	-0.5
4,918,311	+		GFF4926	0.36	-1.6
4,918,313	+		GFF4926	0.36	+0.2
4,918,313	+		GFF4926	0.36	-1.2
4,918,313	+		GFF4926	0.36	-0.4
4,918,319	-		GFF4926	0.37	-1.3
4,918,319	-		GFF4926	0.37	-2.5
4,918,321	-		GFF4926	0.37	-1.5
4,918,326	+		GFF4926	0.38	-0.8
4,918,326	+		GFF4926	0.38	-1.6
4,918,326	-		GFF4926	0.38	-2.4
4,918,329	-		GFF4926	0.38	-1.1
4,918,351	-		GFF4926	0.40	-1.4
4,918,351	-		GFF4926	0.40	+1.4
4,918,356	+		GFF4926	0.41	-0.5
4,918,366	+		GFF4926	0.42	+0.8
4,918,374	-		GFF4926	0.43	+0.1
4,918,374	-		GFF4926	0.43	-0.4
4,918,374	-		GFF4926	0.43	-0.6
4,918,374	-		GFF4926	0.43	-1.5
4,918,374	-		GFF4926	0.43	-0.5
4,918,374	-		GFF4926	0.43	-1.2
4,918,387	+		GFF4926	0.44	+0.1
4,918,393	+		GFF4926	0.44	-0.6
4,918,393	-		GFF4926	0.44	-0.3
4,918,393	-		GFF4926	0.44	+0.0
4,918,404	+		GFF4926	0.46	-2.0
4,918,422	-		GFF4926	0.47	+0.4
4,918,435	-		GFF4926	0.49	-0.4
4,918,469	+		GFF4926	0.52	-1.9
4,918,490	-		GFF4926	0.54	-2.8
4,918,505	+		GFF4926	0.56	-1.5
4,918,505	+		GFF4926	0.56	+0.1
4,918,513	-		GFF4926	0.57	+0.0
4,918,515	+		GFF4926	0.57	-2.3
4,918,523	+		GFF4926	0.58	-0.8
4,918,546	-		GFF4926	0.60	-0.7
4,918,548	-		GFF4926	0.60	-0.0
4,918,579	+		GFF4926	0.64	-2.0
4,918,579	+		GFF4926	0.64	-2.6
4,918,579	+		GFF4926	0.64	-0.6
4,918,584	+		GFF4926	0.64	-0.4
4,918,584	+		GFF4926	0.64	+0.1
4,918,587	-		GFF4926	0.64	-0.2
4,918,587	-		GFF4926	0.64	-1.0
4,918,589	+		GFF4926	0.65	-0.8
4,918,592	-		GFF4926	0.65	+0.8
4,918,592	-		GFF4926	0.65	-0.3
4,918,592	-		GFF4926	0.65	+0.2
4,918,595	-		GFF4926	0.65	-0.2
4,918,597	-		GFF4926	0.66	+0.1
4,918,597	-		GFF4926	0.66	-0.6
4,918,610	-		GFF4926	0.67	-0.1
4,918,611	+		GFF4926	0.67	-0.5
4,918,611	+		GFF4926	0.67	-0.7
4,918,611	+		GFF4926	0.67	-0.3
4,918,611	+		GFF4926	0.67	+1.1
4,918,611	+		GFF4926	0.67	-0.4
4,918,613	+		GFF4926	0.67	-0.8
4,918,619	-		GFF4926	0.68	-2.6
4,918,619	-		GFF4926	0.68	-0.2
4,918,621	+		GFF4926	0.68	-1.8
4,918,621	+		GFF4926	0.68	+0.3
4,918,621	-		GFF4926	0.68	-3.3
4,918,629	-		GFF4926	0.69	-0.2
4,918,700	+		GFF4926	0.76	+0.0
4,918,708	-		GFF4926	0.77	-2.1
4,918,713	-		GFF4926	0.78	-0.6
4,918,721	-		GFF4926	0.78	-2.0
4,918,740	-		GFF4926	0.80	-0.9
4,918,785	-		GFF4926	0.85	-0.2
4,918,826	+		GFF4926	0.89	-0.4
4,918,826	+		GFF4926	0.89	+0.5
4,918,855	-				+0.8
4,918,855	-				-0.1
4,918,862	+				-0.3
4,918,870	-				-1.9
4,918,888	-				-1.6
4,918,897	+				-1.7
4,918,897	+				-0.4
4,918,905	-				-1.2
4,918,944	+				-0.5
4,918,946	+				-2.7
4,918,952	-				-1.7
4,918,965	+				-0.0
4,918,965	+				-1.7
4,918,965	+				+0.3
4,918,969	-				+0.9
4,918,973	-				-1.5
4,918,973	-				-0.3
4,918,973	-				-1.1
4,918,973	-				-1.6
4,918,973	-				+0.4
4,919,006	+				-1.3
4,919,019	+		GFF4927	0.10	+0.1
4,919,079	+		GFF4927	0.18	-2.4
4,919,079	-		GFF4927	0.18	-2.0
4,919,085	-		GFF4927	0.19	-0.9
4,919,094	+		GFF4927	0.20	-1.8
4,919,178	-		GFF4927	0.31	+0.6
4,919,186	+		GFF4927	0.32	-2.2
4,919,190	-		GFF4927	0.33	+1.1
4,919,207	+		GFF4927	0.35	-1.9
4,919,251	+		GFF4927	0.41	+0.4
4,919,251	+		GFF4927	0.41	-1.7
4,919,259	-		GFF4927	0.42	-0.5
4,919,275	+		GFF4927	0.44	-1.6
4,919,285	+		GFF4927	0.46	-1.9
4,919,285	+		GFF4927	0.46	-0.8
4,919,293	-		GFF4927	0.47	-0.3
4,919,323	+		GFF4927	0.51	+0.8
4,919,340	+		GFF4927	0.53	+0.4
4,919,348	-		GFF4927	0.54	-0.0
4,919,358	+		GFF4927	0.55	+0.3
4,919,363	+		GFF4927	0.56	+0.3
4,919,376	+		GFF4927	0.58	-0.7
4,919,376	+		GFF4927	0.58	-0.0
4,919,376	+		GFF4927	0.58	-0.7
4,919,384	-		GFF4927	0.59	-0.7
4,919,396	+		GFF4927	0.61	-1.8
4,919,396	+		GFF4927	0.61	-0.9
4,919,396	+		GFF4927	0.61	-0.7
4,919,400	-		GFF4927	0.61	+0.5
4,919,404	-		GFF4927	0.62	-0.2
4,919,406	+		GFF4927	0.62	+1.3
4,919,449	+		GFF4927	0.68	-0.6
4,919,449	+		GFF4927	0.68	+0.5
4,919,449	+		GFF4927	0.68	-2.7
4,919,449	+		GFF4927	0.68	-0.1
4,919,449	+		GFF4927	0.68	-0.1
4,919,457	-		GFF4927	0.69	-0.1
4,919,457	-		GFF4927	0.69	-0.5
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