Strain Fitness in Sphingobium sp. HT1-2 around GFF4898

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,889,602	-				+0.4
4,889,602	-				-0.3
4,889,602	-				+0.1
4,889,602	-				-1.0
4,889,602	-				-0.6
4,889,602	-				-0.3
4,889,604	+				-0.4
4,889,604	+				-1.2
4,889,604	+				-0.6
4,889,604	+				-0.6
4,889,604	+				-2.4
4,889,612	-				+0.4
4,889,612	-				+1.6
4,889,612	-				+0.9
4,889,612	-				-1.0
4,889,612	-				+0.0
4,889,612	-				-0.2
4,889,612	-				-0.1
4,889,615	+				-1.9
4,889,618	+				-0.4
4,889,628	-				+0.1
4,889,644	+				-1.4
4,889,654	-				-2.4
4,889,654	-				-1.1
4,889,686	+				+0.8
4,889,686	+				+0.1
4,889,700	-				-1.6
4,889,717	-				-1.2
4,889,781	+				+0.3
4,889,781	+				-0.7
4,889,786	+				+0.3
4,889,789	-				+0.4
4,889,795	+				-0.1
4,889,826	+				-2.1
4,889,858	-				-0.9
4,889,890	+		GFF4896	0.12	-3.0
4,889,924	+		GFF4896	0.18	+0.4
4,889,943	+		GFF4896	0.21	+0.6
4,889,945	-		GFF4896	0.21	-0.5
4,889,945	-		GFF4896	0.21	-0.7
4,889,948	+		GFF4896	0.21	-1.5
4,889,958	+		GFF4896	0.23	-1.9
4,889,977	+		GFF4896	0.26	-0.4
4,889,985	+		GFF4896	0.27	-0.6
4,889,986	-		GFF4896	0.27	-1.4
4,889,987	+		GFF4896	0.27	-2.1
4,889,987	+		GFF4896	0.27	-0.0
4,889,993	-		GFF4896	0.28	-2.0
4,890,000	-		GFF4896	0.29	-0.5
4,890,028	+		GFF4896	0.34	-1.8
4,890,028	+		GFF4896	0.34	-0.6
4,890,028	+		GFF4896	0.34	+1.0
4,890,028	+		GFF4896	0.34	-1.6
4,890,028	+		GFF4896	0.34	-2.2
4,890,028	+		GFF4896	0.34	-0.3
4,890,028	+		GFF4896	0.34	-0.8
4,890,028	+		GFF4896	0.34	+0.6
4,890,028	+		GFF4896	0.34	-0.3
4,890,028	+		GFF4896	0.34	-1.7
4,890,036	-		GFF4896	0.35	+0.3
4,890,036	-		GFF4896	0.35	-0.7
4,890,036	-		GFF4896	0.35	-0.5
4,890,036	-		GFF4896	0.35	-3.4
4,890,036	-		GFF4896	0.35	+0.4
4,890,036	-		GFF4896	0.35	-1.3
4,890,036	-		GFF4896	0.35	+0.5
4,890,036	-		GFF4896	0.35	-1.6
4,890,036	-		GFF4896	0.35	-0.1
4,890,036	-		GFF4896	0.35	+0.4
4,890,036	-		GFF4896	0.35	-0.6
4,890,036	-		GFF4896	0.35	-0.3
4,890,036	-		GFF4896	0.35	-0.4
4,890,036	-		GFF4896	0.35	+0.0
4,890,036	-		GFF4896	0.35	+0.1
4,890,046	+		GFF4896	0.37	+0.7
4,890,051	+		GFF4896	0.37	+0.5
4,890,074	+		GFF4896	0.41	+0.1
4,890,082	-		GFF4896	0.42	-0.2
4,890,082	-		GFF4896	0.42	-1.1
4,890,082	-		GFF4896	0.42	-0.9
4,890,082	-		GFF4896	0.42	-0.9
4,890,082	-		GFF4896	0.42	+0.1
4,890,084	+		GFF4896	0.43	-0.9
4,890,084	+		GFF4896	0.43	+1.0
4,890,084	+		GFF4896	0.43	-0.8
4,890,084	+		GFF4896	0.43	+0.6
4,890,092	-		GFF4896	0.44	-1.1
4,890,092	-		GFF4896	0.44	+1.4
4,890,092	-		GFF4896	0.44	-0.4
4,890,097	+		GFF4896	0.45	-2.6
4,890,097	+		GFF4896	0.45	+0.2
4,890,118	-		GFF4896	0.48	-2.0
4,890,126	+		GFF4896	0.49	+0.9
4,890,132	+		GFF4896	0.50	-2.3
4,890,138	+		GFF4896	0.51	+0.5
4,890,143	+		GFF4896	0.52	-1.9
4,890,148	+		GFF4896	0.52	-0.4
4,890,166	-		GFF4896	0.55	+0.1
4,890,177	+		GFF4896	0.57	-2.0
4,890,177	+		GFF4896	0.57	-0.6
4,890,177	+		GFF4896	0.57	+1.1
4,890,177	+		GFF4896	0.57	-1.0
4,890,177	+		GFF4896	0.57	-0.1
4,890,185	-		GFF4896	0.58	-0.6
4,890,185	-		GFF4896	0.58	-0.3
4,890,185	-		GFF4896	0.58	-0.8
4,890,185	-		GFF4896	0.58	-1.8
4,890,185	-		GFF4896	0.58	+1.2
4,890,185	-		GFF4896	0.58	+0.1
4,890,188	+		GFF4896	0.59	-1.9
4,890,200	-		GFF4896	0.61	-1.1
4,890,228	-		GFF4896	0.65	+0.6
4,890,230	-		GFF4896	0.65	+0.8
4,890,240	-		GFF4896	0.67	-1.5
4,890,275	-		GFF4896	0.72	-1.1
4,890,275	-		GFF4896	0.72	+0.3
4,890,279	+		GFF4896	0.73	+0.7
4,890,280	-		GFF4896	0.73	-0.7
4,890,280	-		GFF4896	0.73	-0.6
4,890,280	-		GFF4896	0.73	+0.2
4,890,285	-		GFF4896	0.74	+0.3
4,890,311	+		GFF4896	0.78	-0.8
4,890,319	-		GFF4896	0.79	+0.3
4,890,319	-		GFF4896	0.79	-0.3
4,890,319	-		GFF4896	0.79	-0.6
4,890,321	+		GFF4896	0.79	-1.1
4,890,321	+		GFF4896	0.79	-2.1
4,890,321	+		GFF4896	0.79	-1.8
4,890,321	+		GFF4896	0.79	-0.8
4,890,329	-		GFF4896	0.81	-2.0
4,890,329	-		GFF4896	0.81	-0.9
4,890,329	-		GFF4896	0.81	-0.2
4,890,329	-		GFF4896	0.81	+0.2
4,890,333	+		GFF4896	0.81	-0.6
4,890,333	+		GFF4896	0.81	-1.6
4,890,339	-		GFF4896	0.82	-0.4
4,890,340	+		GFF4896	0.82	+0.1
4,890,366	+		GFF4896	0.86	-0.5
4,890,393	-				+0.7
4,890,410	+				-0.1
4,890,446	+				-0.6
4,890,446	+				-1.6
4,890,446	+				-0.5
4,890,446	+				-0.8
4,890,454	-				-1.7
4,890,473	-				-2.0
4,890,498	-				-2.0
4,890,498	-				+0.2
4,890,498	-				-0.1
4,890,503	-				-0.0
4,890,503	-				-2.0
4,890,601	+				-0.8
4,890,601	+				-1.8
4,890,633	-				-0.6
4,890,638	-		GFF4898	0.10	-1.7
4,890,641	+		GFF4898	0.11	-0.9
4,890,641	+		GFF4898	0.11	-0.1
4,890,642	+		GFF4898	0.11	+0.9
4,890,648	+		GFF4898	0.13	-0.6
4,890,648	+		GFF4898	0.13	-2.8
4,890,648	+		GFF4898	0.13	+0.3
4,890,650	-		GFF4898	0.13	-2.6
4,890,655	-		GFF4898	0.15	-0.3
4,890,656	-		GFF4898	0.15	-1.6
4,890,656	-		GFF4898	0.15	-3.0
4,890,661	-		GFF4898	0.16	-0.9
4,890,661	-		GFF4898	0.16	-1.5
4,890,662	-		GFF4898	0.16	-0.3
4,890,675	+		GFF4898	0.20	-0.1
4,890,693	-		GFF4898	0.24	-2.7
4,890,694	-		GFF4898	0.24	-0.6
4,890,696	+		GFF4898	0.25	-1.2
4,890,709	-		GFF4898	0.28	-1.5
4,890,727	+		GFF4898	0.33	-1.1
4,890,727	+		GFF4898	0.33	-0.1
4,890,735	-		GFF4898	0.35	-1.8
4,890,742	+		GFF4898	0.36	-2.0
4,890,767	+		GFF4898	0.43	-0.9
4,890,796	+		GFF4898	0.50	-0.6
4,890,797	+		GFF4898	0.50	-0.1
4,890,797	+		GFF4898	0.50	-0.9
4,890,797	+		GFF4898	0.50	-0.3
4,890,797	+		GFF4898	0.50	+0.5
4,890,797	+		GFF4898	0.50	-0.2
4,890,801	+		GFF4898	0.51	+0.2
4,890,801	+		GFF4898	0.51	+0.3
4,890,804	-		GFF4898	0.52	+0.0
4,890,804	-		GFF4898	0.52	-0.9
4,890,804	-		GFF4898	0.52	+0.2
4,890,805	-		GFF4898	0.52	-0.1
4,890,805	-		GFF4898	0.52	-2.2
4,890,805	-		GFF4898	0.52	+0.4
4,890,805	-		GFF4898	0.52	-0.1
4,890,805	-		GFF4898	0.52	-1.1
4,890,805	-		GFF4898	0.52	-0.4
4,890,806	-		GFF4898	0.52	-0.9
4,890,809	-		GFF4898	0.53	-0.8
4,890,825	+		GFF4898	0.57	+0.5
4,890,833	-		GFF4898	0.59	-0.1
4,890,883	+		GFF4898	0.71	-0.7
4,890,891	+		GFF4898	0.73	-2.4
4,890,926	-		GFF4898	0.82	-0.9
4,890,926	-		GFF4898	0.82	-2.6
4,890,939	+		GFF4898	0.85	-1.3
4,890,939	+		GFF4898	0.85	-0.7
4,890,939	+		GFF4898	0.85	-1.5
4,890,944	+		GFF4898	0.87	-1.9
4,890,952	-		GFF4898	0.89	-1.3
4,890,962	+				-4.0
4,890,962	+				-1.3
4,890,965	-				-1.0
4,890,965	-				+0.5
4,890,967	+				-0.9
4,890,967	+				-1.7
4,890,970	-				-1.6
4,890,975	-				-0.9
4,890,977	+				-0.1
4,890,992	+				-0.4
4,891,000	-				+0.4
4,891,007	+				-0.6
4,891,043	-				-0.4
4,891,084	+		GFF4899	0.12	-0.7
4,891,087	-		GFF4899	0.12	-0.6
4,891,088	+		GFF4899	0.12	-0.3
4,891,088	+		GFF4899	0.12	+0.0
4,891,089	+		GFF4899	0.12	-1.3
4,891,092	-		GFF4899	0.13	-2.5
4,891,128	+		GFF4899	0.18	-0.3
4,891,138	+		GFF4899	0.19	+0.5
4,891,138	+		GFF4899	0.19	-1.8
4,891,138	+		GFF4899	0.19	-0.3
4,891,146	-		GFF4899	0.20	-1.2
4,891,146	-		GFF4899	0.20	+0.3
4,891,146	-		GFF4899	0.20	-0.2
4,891,146	-		GFF4899	0.20	-2.0
4,891,159	-		GFF4899	0.22	-0.7
4,891,165	+		GFF4899	0.23	+0.0
4,891,169	-		GFF4899	0.24	-1.1
4,891,190	-		GFF4899	0.27	-0.1
4,891,200	-		GFF4899	0.28	-0.1
4,891,216	+		GFF4899	0.31	-0.4
4,891,226	-		GFF4899	0.32	+0.3
4,891,227	+		GFF4899	0.32	-2.5
4,891,227	+		GFF4899	0.32	-0.5
4,891,228	+		GFF4899	0.32	-1.4
4,891,235	-		GFF4899	0.33	-3.3
4,891,245	-		GFF4899	0.35	-1.6
4,891,248	+		GFF4899	0.35	-0.5
4,891,250	+		GFF4899	0.35	+0.9
4,891,257	+		GFF4899	0.37	-1.8
4,891,258	+		GFF4899	0.37	-0.2
4,891,266	-		GFF4899	0.38	-0.2
4,891,311	-		GFF4899	0.44	-0.5
4,891,317	-		GFF4899	0.45	-0.6
4,891,317	-		GFF4899	0.45	+0.1
4,891,321	+		GFF4899	0.46	-1.7
4,891,323	-		GFF4899	0.46	+0.3
4,891,327	+		GFF4899	0.47	+0.7
4,891,329	-		GFF4899	0.47	-0.4
4,891,329	-		GFF4899	0.47	-0.4
4,891,329	-		GFF4899	0.47	+0.0
4,891,358	+		GFF4899	0.51	-1.5
4,891,358	+		GFF4899	0.51	-1.5
4,891,358	+		GFF4899	0.51	-0.9
4,891,359	-		GFF4899	0.51	+0.2
4,891,366	+		GFF4899	0.52	-1.7
4,891,366	-		GFF4899	0.52	-1.7
4,891,374	-		GFF4899	0.53	+0.0
4,891,374	-		GFF4899	0.53	-0.7
4,891,376	+		GFF4899	0.54	-0.3
4,891,394	+		GFF4899	0.56	+0.5
4,891,401	-		GFF4899	0.57	-1.1
4,891,413	+		GFF4899	0.59	-2.2
4,891,426	+		GFF4899	0.61	-1.8
4,891,462	+		GFF4899	0.66	-0.5
4,891,462	+		GFF4899	0.66	-0.5
4,891,467	+		GFF4899	0.67	+0.1
4,891,467	+		GFF4899	0.67	-0.7
4,891,470	-		GFF4899	0.67	-0.5
4,891,470	-		GFF4899	0.67	-1.1
4,891,475	-		GFF4899	0.68	-1.2
4,891,475	-		GFF4899	0.68	-0.4
4,891,475	-		GFF4899	0.68	+0.1
4,891,475	-		GFF4899	0.68	-0.5
4,891,475	-		GFF4899	0.68	-2.4
4,891,475	-		GFF4899	0.68	+0.5
4,891,480	-		GFF4899	0.69	-1.3
4,891,480	-		GFF4899	0.69	-2.3
4,891,500	+		GFF4899	0.72	-0.6
4,891,500	-		GFF4899	0.72	+0.2
4,891,526	-		GFF4899	0.75	-1.0
4,891,540	-		GFF4899	0.77	-1.5
4,891,552	+		GFF4899	0.79	-1.8
4,891,552	+		GFF4899	0.79	-0.8
4,891,560	-		GFF4899	0.80	+0.2
4,891,560	-		GFF4899	0.80	+0.5
4,891,560	-		GFF4899	0.80	-0.6
4,891,560	-		GFF4899	0.80	-0.2
4,891,563	+		GFF4899	0.81	+0.2
4,891,563	+		GFF4899	0.81	-0.2
4,891,563	+		GFF4899	0.81	-0.8
4,891,563	+		GFF4899	0.81	-0.7
4,891,564	-		GFF4899	0.81	-1.3
4,891,571	-		GFF4899	0.82	+0.2
4,891,575	+		GFF4899	0.82	+0.0
4,891,575	+		GFF4899	0.82	+0.3
4,891,578	-		GFF4899	0.83	-1.1
4,891,583	-		GFF4899	0.84	-0.7
4,891,591	+		GFF4899	0.85	-0.5
4,891,596	+		GFF4899	0.85	-0.8
4,891,610	+		GFF4899	0.87	-0.3
4,891,618	-		GFF4899	0.89	-0.6
4,891,618	-		GFF4899	0.89	-1.7
4,891,624	-		GFF4899	0.89	+0.2
4,891,658	+				-0.4
4,891,658	+				-0.0
4,891,666	-				-0.6
4,891,666	-				-0.3
4,891,692	+				-0.4
4,891,692	+				-1.3
4,891,692	+				-0.1
4,891,700	-				-0.3
4,891,700	-				-0.3
4,891,721	-				-1.2
4,891,721	-				-0.2
4,891,721	-				-0.3
4,891,730	+				-1.2
4,891,738	-				-1.7
4,891,738	-				+0.3
4,891,751	+				+0.2
4,891,751	+				-0.6
4,891,755	-				+0.1
4,891,759	-				+0.4
4,891,759	-				+0.0
4,891,773	+				-0.7
4,891,786	-				-2.6
4,891,797	-				-1.8
4,891,811	+				-0.5
4,891,820	+		GFF4900	0.11	+0.2
4,891,873	+		GFF4900	0.23	-1.5
4,891,888	+		GFF4900	0.27	-2.5
4,891,891	-		GFF4900	0.27	-0.5
4,891,896	-		GFF4900	0.29	-1.4
4,891,896	-		GFF4900	0.29	-0.5
4,891,896	-		GFF4900	0.29	-0.6
4,891,897	+		GFF4900	0.29	-0.1
4,891,897	+		GFF4900	0.29	-0.0
4,891,897	+		GFF4900	0.29	-0.7
4,891,897	+		GFF4900	0.29	+0.0
4,891,902	+		GFF4900	0.30	+0.5
4,891,905	-		GFF4900	0.31	-2.1
4,891,905	-		GFF4900	0.31	-0.7
4,891,905	-		GFF4900	0.31	-0.4
4,891,905	-		GFF4900	0.31	-1.0
4,891,910	-		GFF4900	0.32	-2.6
4,891,916	+		GFF4900	0.33	-0.9
4,891,916	+		GFF4900	0.33	-0.3
4,891,916	+		GFF4900	0.33	+0.8
4,891,916	+		GFF4900	0.33	-1.1
4,891,919	-		GFF4900	0.34	-0.9
4,891,924	-		GFF4900	0.35	+0.2
4,891,924	-		GFF4900	0.35	+0.5
4,891,924	-		GFF4900	0.35	+0.0
4,891,950	-		GFF4900	0.41	+0.0
4,891,950	-		GFF4900	0.41	-0.4
4,891,950	-		GFF4900	0.41	-1.1
4,891,981	+		GFF4900	0.49	-0.3
4,891,997	-		GFF4900	0.52	-0.9