Strain Fitness in Sphingobium sp. HT1-2 around GFF4896

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,888,821	+		GFF4895	0.48	+0.2
4,888,834	-		GFF4895	0.49	-1.6
4,888,849	-		GFF4895	0.50	+0.2
4,888,887	+		GFF4895	0.52	+0.4
4,888,891	-		GFF4895	0.52	+1.0
4,888,906	+		GFF4895	0.53	-0.8
4,888,917	+		GFF4895	0.54	-0.0
4,888,917	+		GFF4895	0.54	-0.9
4,888,917	+		GFF4895	0.54	+0.4
4,888,936	+		GFF4895	0.55	-0.6
4,888,936	+		GFF4895	0.55	+1.1
4,888,944	-		GFF4895	0.56	+0.3
4,888,944	-		GFF4895	0.56	+0.1
4,888,944	-		GFF4895	0.56	-0.0
4,888,944	-		GFF4895	0.56	+0.2
4,888,944	-		GFF4895	0.56	+1.1
4,888,944	-		GFF4895	0.56	-2.9
4,888,945	+		GFF4895	0.56	-0.1
4,888,951	+		GFF4895	0.56	-1.0
4,888,952	-		GFF4895	0.56	+0.7
4,888,995	-		GFF4895	0.58	-1.6
4,889,066	+		GFF4895	0.63	-0.4
4,889,066	-		GFF4895	0.63	-1.6
4,889,072	+		GFF4895	0.63	+1.0
4,889,074	-		GFF4895	0.63	-1.1
4,889,103	+		GFF4895	0.65	+0.6
4,889,103	+		GFF4895	0.65	+1.0
4,889,176	-		GFF4895	0.69	-0.5
4,889,177	-		GFF4895	0.69	-1.5
4,889,177	-		GFF4895	0.69	-0.5
4,889,179	+		GFF4895	0.69	+0.2
4,889,179	+		GFF4895	0.69	-1.2
4,889,179	+		GFF4895	0.69	-0.9
4,889,179	+		GFF4895	0.69	+0.4
4,889,179	+		GFF4895	0.69	+0.6
4,889,179	+		GFF4895	0.69	-2.5
4,889,179	+		GFF4895	0.69	-0.4
4,889,179	+		GFF4895	0.69	-0.2
4,889,179	+		GFF4895	0.69	-2.7
4,889,179	+		GFF4895	0.69	-0.2
4,889,179	+		GFF4895	0.69	+0.5
4,889,179	+		GFF4895	0.69	-1.6
4,889,179	+		GFF4895	0.69	+0.9
4,889,179	+		GFF4895	0.69	+0.4
4,889,179	+		GFF4895	0.69	-0.2
4,889,179	+		GFF4895	0.69	-1.5
4,889,179	+		GFF4895	0.69	+0.1
4,889,179	+		GFF4895	0.69	-0.4
4,889,179	+		GFF4895	0.69	-1.3
4,889,179	+		GFF4895	0.69	+0.7
4,889,179	+		GFF4895	0.69	-0.9
4,889,179	+		GFF4895	0.69	+0.5
4,889,179	+		GFF4895	0.69	-0.5
4,889,181	+		GFF4895	0.69	+1.0
4,889,187	-		GFF4895	0.70	+0.3
4,889,187	-		GFF4895	0.70	+0.4
4,889,187	-		GFF4895	0.70	-0.8
4,889,187	-		GFF4895	0.70	+1.3
4,889,187	-		GFF4895	0.70	+1.0
4,889,187	-		GFF4895	0.70	-2.0
4,889,187	-		GFF4895	0.70	+0.9
4,889,187	-		GFF4895	0.70	+0.5
4,889,187	-		GFF4895	0.70	-0.5
4,889,187	-		GFF4895	0.70	-1.6
4,889,187	-		GFF4895	0.70	-1.3
4,889,187	-		GFF4895	0.70	-2.1
4,889,187	-		GFF4895	0.70	+0.1
4,889,187	-		GFF4895	0.70	+0.9
4,889,189	-		GFF4895	0.70	-0.0
4,889,189	-		GFF4895	0.70	-0.8
4,889,204	-		GFF4895	0.71	-0.5
4,889,209	-		GFF4895	0.71	-2.2
4,889,214	+		GFF4895	0.71	-0.2
4,889,223	+		GFF4895	0.72	-1.5
4,889,223	+		GFF4895	0.72	-0.4
4,889,227	+		GFF4895	0.72	+0.5
4,889,231	-		GFF4895	0.72	-2.4
4,889,231	-		GFF4895	0.72	+0.5
4,889,246	+		GFF4895	0.73	-0.1
4,889,246	+		GFF4895	0.73	-0.4
4,889,254	-		GFF4895	0.74	+0.4
4,889,255	+		GFF4895	0.74	-0.1
4,889,257	-		GFF4895	0.74	-1.0
4,889,258	-		GFF4895	0.74	-0.0
4,889,265	+		GFF4895	0.74	+0.1
4,889,265	+		GFF4895	0.74	+0.3
4,889,265	+		GFF4895	0.74	-0.5
4,889,265	+		GFF4895	0.74	+0.7
4,889,273	-		GFF4895	0.75	-0.4
4,889,273	-		GFF4895	0.75	-1.9
4,889,273	-		GFF4895	0.75	-0.6
4,889,283	+		GFF4895	0.75	+0.2
4,889,288	-		GFF4895	0.75	+0.4
4,889,291	-		GFF4895	0.76	-1.2
4,889,291	-		GFF4895	0.76	-0.5
4,889,306	-		GFF4895	0.77	-0.4
4,889,316	+		GFF4895	0.77	+0.1
4,889,316	+		GFF4895	0.77	-0.3
4,889,322	+		GFF4895	0.77	+0.9
4,889,323	+		GFF4895	0.78	+0.4
4,889,323	+		GFF4895	0.78	+0.1
4,889,328	+		GFF4895	0.78	-1.1
4,889,328	+		GFF4895	0.78	+1.5
4,889,330	+		GFF4895	0.78	-0.6
4,889,330	-		GFF4895	0.78	-0.9
4,889,331	-		GFF4895	0.78	+0.1
4,889,348	+		GFF4895	0.79	-0.8
4,889,362	+		GFF4895	0.80	-0.5
4,889,362	+		GFF4895	0.80	-0.4
4,889,373	-		GFF4895	0.80	-1.4
4,889,381	+		GFF4895	0.81	+1.6
4,889,381	+		GFF4895	0.81	-0.2
4,889,381	+		GFF4895	0.81	-2.1
4,889,381	+		GFF4895	0.81	-0.8
4,889,389	-		GFF4895	0.81	-0.2
4,889,389	-		GFF4895	0.81	+0.4
4,889,389	-		GFF4895	0.81	-2.1
4,889,389	-		GFF4895	0.81	+0.9
4,889,389	-		GFF4895	0.81	-0.4
4,889,389	-		GFF4895	0.81	+1.2
4,889,389	-		GFF4895	0.81	+0.7
4,889,389	-		GFF4895	0.81	+0.9
4,889,389	-		GFF4895	0.81	+0.5
4,889,389	-		GFF4895	0.81	+0.5
4,889,399	+		GFF4895	0.82	+0.6
4,889,399	+		GFF4895	0.82	-0.1
4,889,399	+		GFF4895	0.82	-0.5
4,889,404	+		GFF4895	0.82	-1.5
4,889,404	+		GFF4895	0.82	+1.0
4,889,404	+		GFF4895	0.82	-0.3
4,889,407	-		GFF4895	0.82	+0.5
4,889,407	-		GFF4895	0.82	-0.2
4,889,407	-		GFF4895	0.82	+0.2
4,889,411	-		GFF4895	0.83	-0.2
4,889,412	-		GFF4895	0.83	+0.2
4,889,412	-		GFF4895	0.83	-0.3
4,889,419	+		GFF4895	0.83	+1.0
4,889,424	+		GFF4895	0.83	+0.4
4,889,424	+		GFF4895	0.83	-0.5
4,889,424	+		GFF4895	0.83	-1.6
4,889,424	+		GFF4895	0.83	-0.7
4,889,424	+		GFF4895	0.83	-2.8
4,889,424	+		GFF4895	0.83	-0.3
4,889,424	+		GFF4895	0.83	+0.1
4,889,424	+		GFF4895	0.83	+0.1
4,889,424	+		GFF4895	0.83	-1.5
4,889,424	+		GFF4895	0.83	-1.5
4,889,427	-		GFF4895	0.84	-0.3
4,889,432	-		GFF4895	0.84	+0.1
4,889,432	-		GFF4895	0.84	+0.9
4,889,432	-		GFF4895	0.84	-0.5
4,889,432	-		GFF4895	0.84	-2.3
4,889,432	-		GFF4895	0.84	-0.1
4,889,432	-		GFF4895	0.84	-2.1
4,889,432	-		GFF4895	0.84	-0.1
4,889,440	+		GFF4895	0.84	-0.5
4,889,449	-		GFF4895	0.85	-2.0
4,889,449	-		GFF4895	0.85	+1.0
4,889,469	+		GFF4895	0.86	-0.8
4,889,470	+		GFF4895	0.86	-0.8
4,889,470	+		GFF4895	0.86	+0.7
4,889,478	-		GFF4895	0.87	-0.3
4,889,483	+		GFF4895	0.87	-1.1
4,889,504	+		GFF4895	0.88	-0.3
4,889,509	+		GFF4895	0.88	-0.5
4,889,514	+		GFF4895	0.89	+0.6
4,889,517	-		GFF4895	0.89	+2.0
4,889,522	+		GFF4895	0.89	+0.7
4,889,522	-		GFF4895	0.89	-0.3
4,889,522	-		GFF4895	0.89	-1.0
4,889,522	-		GFF4895	0.89	-0.0
4,889,522	-		GFF4895	0.89	+0.6
4,889,522	-		GFF4895	0.89	-2.1
4,889,557	+				-0.4
4,889,561	+				+0.4
4,889,562	-				-1.2
4,889,565	-				-0.4
4,889,579	-				-1.7
4,889,589	-				+0.3
4,889,594	+				-1.4
4,889,594	+				-1.0
4,889,594	+				-0.7
4,889,602	-				+0.4
4,889,602	-				-0.3
4,889,602	-				+0.1
4,889,602	-				-1.0
4,889,602	-				-0.6
4,889,602	-				-0.3
4,889,604	+				-0.4
4,889,604	+				-1.2
4,889,604	+				-0.6
4,889,604	+				-0.6
4,889,604	+				-2.4
4,889,612	-				+0.4
4,889,612	-				+1.6
4,889,612	-				+0.9
4,889,612	-				-1.0
4,889,612	-				+0.0
4,889,612	-				-0.2
4,889,612	-				-0.1
4,889,615	+				-1.9
4,889,618	+				-0.4
4,889,628	-				+0.1
4,889,644	+				-1.4
4,889,654	-				-2.4
4,889,654	-				-1.1
4,889,686	+				+0.8
4,889,686	+				+0.1
4,889,700	-				-1.6
4,889,717	-				-1.2
4,889,781	+				+0.3
4,889,781	+				-0.7
4,889,786	+				+0.3
4,889,789	-				+0.4
4,889,795	+				-0.1
4,889,826	+				-2.1
4,889,858	-				-0.9
4,889,890	+		GFF4896	0.12	-3.0
4,889,924	+		GFF4896	0.18	+0.4
4,889,943	+		GFF4896	0.21	+0.6
4,889,945	-		GFF4896	0.21	-0.5
4,889,945	-		GFF4896	0.21	-0.7
4,889,948	+		GFF4896	0.21	-1.5
4,889,958	+		GFF4896	0.23	-1.9
4,889,977	+		GFF4896	0.26	-0.4
4,889,985	+		GFF4896	0.27	-0.6
4,889,986	-		GFF4896	0.27	-1.4
4,889,987	+		GFF4896	0.27	-2.1
4,889,987	+		GFF4896	0.27	-0.0
4,889,993	-		GFF4896	0.28	-2.0
4,890,000	-		GFF4896	0.29	-0.5
4,890,028	+		GFF4896	0.34	-1.8
4,890,028	+		GFF4896	0.34	-0.6
4,890,028	+		GFF4896	0.34	+1.0
4,890,028	+		GFF4896	0.34	-1.6
4,890,028	+		GFF4896	0.34	-2.2
4,890,028	+		GFF4896	0.34	-0.3
4,890,028	+		GFF4896	0.34	-0.8
4,890,028	+		GFF4896	0.34	+0.6
4,890,028	+		GFF4896	0.34	-0.3
4,890,028	+		GFF4896	0.34	-1.7
4,890,036	-		GFF4896	0.35	+0.3
4,890,036	-		GFF4896	0.35	-0.7
4,890,036	-		GFF4896	0.35	-0.5
4,890,036	-		GFF4896	0.35	-3.4
4,890,036	-		GFF4896	0.35	+0.4
4,890,036	-		GFF4896	0.35	-1.3
4,890,036	-		GFF4896	0.35	+0.5
4,890,036	-		GFF4896	0.35	-1.6
4,890,036	-		GFF4896	0.35	-0.1
4,890,036	-		GFF4896	0.35	+0.4
4,890,036	-		GFF4896	0.35	-0.6
4,890,036	-		GFF4896	0.35	-0.3
4,890,036	-		GFF4896	0.35	-0.4
4,890,036	-		GFF4896	0.35	+0.0
4,890,036	-		GFF4896	0.35	+0.1
4,890,046	+		GFF4896	0.37	+0.7
4,890,051	+		GFF4896	0.37	+0.5
4,890,074	+		GFF4896	0.41	+0.1
4,890,082	-		GFF4896	0.42	-0.2
4,890,082	-		GFF4896	0.42	-1.1
4,890,082	-		GFF4896	0.42	-0.9
4,890,082	-		GFF4896	0.42	-0.9
4,890,082	-		GFF4896	0.42	+0.1
4,890,084	+		GFF4896	0.43	-0.9
4,890,084	+		GFF4896	0.43	+1.0
4,890,084	+		GFF4896	0.43	-0.8
4,890,084	+		GFF4896	0.43	+0.6
4,890,092	-		GFF4896	0.44	-1.1
4,890,092	-		GFF4896	0.44	+1.4
4,890,092	-		GFF4896	0.44	-0.4
4,890,097	+		GFF4896	0.45	-2.6
4,890,097	+		GFF4896	0.45	+0.2
4,890,118	-		GFF4896	0.48	-2.0
4,890,126	+		GFF4896	0.49	+0.9
4,890,132	+		GFF4896	0.50	-2.3
4,890,138	+		GFF4896	0.51	+0.5
4,890,143	+		GFF4896	0.52	-1.9
4,890,148	+		GFF4896	0.52	-0.4
4,890,166	-		GFF4896	0.55	+0.1
4,890,177	+		GFF4896	0.57	-2.0
4,890,177	+		GFF4896	0.57	-0.6
4,890,177	+		GFF4896	0.57	+1.1
4,890,177	+		GFF4896	0.57	-1.0
4,890,177	+		GFF4896	0.57	-0.1
4,890,185	-		GFF4896	0.58	-0.6
4,890,185	-		GFF4896	0.58	-0.3
4,890,185	-		GFF4896	0.58	-0.8
4,890,185	-		GFF4896	0.58	-1.8
4,890,185	-		GFF4896	0.58	+1.2
4,890,185	-		GFF4896	0.58	+0.1
4,890,188	+		GFF4896	0.59	-1.9
4,890,200	-		GFF4896	0.61	-1.1
4,890,228	-		GFF4896	0.65	+0.6
4,890,230	-		GFF4896	0.65	+0.8
4,890,240	-		GFF4896	0.67	-1.5
4,890,275	-		GFF4896	0.72	-1.1
4,890,275	-		GFF4896	0.72	+0.3
4,890,279	+		GFF4896	0.73	+0.7
4,890,280	-		GFF4896	0.73	-0.7
4,890,280	-		GFF4896	0.73	-0.6
4,890,280	-		GFF4896	0.73	+0.2
4,890,285	-		GFF4896	0.74	+0.3
4,890,311	+		GFF4896	0.78	-0.8
4,890,319	-		GFF4896	0.79	+0.3
4,890,319	-		GFF4896	0.79	-0.3
4,890,319	-		GFF4896	0.79	-0.6
4,890,321	+		GFF4896	0.79	-1.1
4,890,321	+		GFF4896	0.79	-2.1
4,890,321	+		GFF4896	0.79	-1.8
4,890,321	+		GFF4896	0.79	-0.8
4,890,329	-		GFF4896	0.81	-2.0
4,890,329	-		GFF4896	0.81	-0.9
4,890,329	-		GFF4896	0.81	-0.2
4,890,329	-		GFF4896	0.81	+0.2
4,890,333	+		GFF4896	0.81	-0.6
4,890,333	+		GFF4896	0.81	-1.6
4,890,339	-		GFF4896	0.82	-0.4
4,890,340	+		GFF4896	0.82	+0.1
4,890,366	+		GFF4896	0.86	-0.5
4,890,393	-				+0.7
4,890,410	+				-0.1
4,890,446	+				-0.6
4,890,446	+				-1.6
4,890,446	+				-0.5
4,890,446	+				-0.8
4,890,454	-				-1.7
4,890,473	-				-2.0
4,890,498	-				-2.0
4,890,498	-				+0.2
4,890,498	-				-0.1
4,890,503	-				-0.0
4,890,503	-				-2.0
4,890,601	+				-0.8
4,890,601	+				-1.8
4,890,633	-				-0.6
4,890,638	-		GFF4898	0.10	-1.7
4,890,641	+		GFF4898	0.11	-0.9
4,890,641	+		GFF4898	0.11	-0.1
4,890,642	+		GFF4898	0.11	+0.9
4,890,648	+		GFF4898	0.13	-0.6
4,890,648	+		GFF4898	0.13	-2.8
4,890,648	+		GFF4898	0.13	+0.3
4,890,650	-		GFF4898	0.13	-2.6
4,890,655	-		GFF4898	0.15	-0.3
4,890,656	-		GFF4898	0.15	-1.6
4,890,656	-		GFF4898	0.15	-3.0
4,890,661	-		GFF4898	0.16	-0.9
4,890,661	-		GFF4898	0.16	-1.5
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