Strain Fitness in Sphingobium sp. HT1-2 around GFF4730

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,727,308	+		GFF4729	0.39	+0.8
4,727,313	+		GFF4729	0.39	+0.2
4,727,357	+		GFF4729	0.42	+0.6
4,727,366	-		GFF4729	0.43	+0.7
4,727,392	+		GFF4729	0.44	+1.2
4,727,400	+		GFF4729	0.45	-0.2
4,727,427	+		GFF4729	0.46	-1.1
4,727,465	+		GFF4729	0.49	-0.8
4,727,465	+		GFF4729	0.49	+0.1
4,727,465	+		GFF4729	0.49	-0.8
4,727,465	+		GFF4729	0.49	-0.4
4,727,473	-		GFF4729	0.49	-2.0
4,727,496	-		GFF4729	0.51	+1.0
4,727,496	-		GFF4729	0.51	+0.1
4,727,523	-		GFF4729	0.52	-0.1
4,727,537	+		GFF4729	0.53	-0.1
4,727,538	+		GFF4729	0.53	-2.1
4,727,543	+		GFF4729	0.54	+1.1
4,727,543	+		GFF4729	0.54	+0.3
4,727,546	-		GFF4729	0.54	-1.0
4,727,551	-		GFF4729	0.54	-1.3
4,727,575	-		GFF4729	0.56	-0.4
4,727,575	-		GFF4729	0.56	-1.0
4,727,575	-		GFF4729	0.56	-1.9
4,727,594	-		GFF4729	0.57	-1.4
4,727,594	-		GFF4729	0.57	+0.0
4,727,594	-		GFF4729	0.57	-0.2
4,727,596	-		GFF4729	0.57	-1.2
4,727,613	-		GFF4729	0.58	-0.2
4,727,623	-		GFF4729	0.59	-1.3
4,727,623	-		GFF4729	0.59	+0.0
4,727,690	-		GFF4729	0.63	-0.3
4,727,692	+		GFF4729	0.63	-0.9
4,727,692	+		GFF4729	0.63	+0.7
4,727,700	-		GFF4729	0.64	+1.1
4,727,700	-		GFF4729	0.64	-0.4
4,727,702	-		GFF4729	0.64	+1.0
4,727,702	-		GFF4729	0.64	-1.8
4,727,705	-		GFF4729	0.64	+1.3
4,727,730	-		GFF4729	0.66	+0.5
4,727,730	-		GFF4729	0.66	+0.6
4,727,732	+		GFF4729	0.66	-1.3
4,727,732	+		GFF4729	0.66	+1.1
4,727,732	+		GFF4729	0.66	+1.1
4,727,732	+		GFF4729	0.66	+1.8
4,727,740	-		GFF4729	0.66	-1.0
4,727,763	-		GFF4729	0.68	-0.4
4,727,781	+		GFF4729	0.69	+0.1
4,727,781	+		GFF4729	0.69	-1.0
4,727,781	+		GFF4729	0.69	-0.9
4,727,786	+		GFF4729	0.69	-0.1
4,727,789	-		GFF4729	0.69	-1.2
4,727,789	-		GFF4729	0.69	-0.6
4,727,789	-		GFF4729	0.69	-2.0
4,727,789	-		GFF4729	0.69	-1.4
4,727,795	-		GFF4729	0.70	-1.5
4,727,821	+		GFF4729	0.71	-1.6
4,727,829	-		GFF4729	0.72	+0.5
4,727,868	-		GFF4729	0.74	-1.0
4,727,924	+		GFF4729	0.78	-0.3
4,727,928	+		GFF4729	0.78	-1.6
4,727,930	+		GFF4729	0.78	-0.9
4,727,934	+		GFF4729	0.79	+0.1
4,727,934	+		GFF4729	0.79	-0.3
4,727,934	+		GFF4729	0.79	-0.2
4,727,934	+		GFF4729	0.79	-1.0
4,727,934	+		GFF4729	0.79	+0.1
4,727,942	-		GFF4729	0.79	+1.6
4,727,942	-		GFF4729	0.79	+0.7
4,727,942	-		GFF4729	0.79	+0.1
4,727,942	-		GFF4729	0.79	+0.6
4,727,942	-		GFF4729	0.79	-0.7
4,727,942	-		GFF4729	0.79	-2.3
4,727,942	-		GFF4729	0.79	+0.1
4,727,942	-		GFF4729	0.79	-0.9
4,727,942	-		GFF4729	0.79	+0.6
4,727,957	+		GFF4729	0.80	-1.6
4,727,959	+		GFF4729	0.80	-0.4
4,727,959	+		GFF4729	0.80	-1.3
4,727,967	-		GFF4729	0.81	-1.9
4,727,967	-		GFF4729	0.81	-1.1
4,727,992	+		GFF4729	0.82	-1.3
4,727,992	+		GFF4729	0.82	+0.1
4,727,992	+		GFF4729	0.82	-0.1
4,727,992	+		GFF4729	0.82	+0.6
4,727,992	+		GFF4729	0.82	-1.0
4,727,992	+		GFF4729	0.82	+0.5
4,727,999	+		GFF4729	0.83	+0.4
4,728,000	-		GFF4729	0.83	-0.8
4,728,000	-		GFF4729	0.83	-0.6
4,728,007	-		GFF4729	0.83	-0.3
4,728,007	-		GFF4729	0.83	-0.3
4,728,007	-		GFF4729	0.83	+0.5
4,728,007	-		GFF4729	0.83	-1.0
4,728,007	-		GFF4729	0.83	-1.9
4,728,007	-		GFF4729	0.83	-0.9
4,728,009	+		GFF4729	0.83	-0.9
4,728,018	+		GFF4729	0.84	-0.2
4,728,024	+		GFF4729	0.84	-2.0
4,728,068	+		GFF4729	0.87	+0.1
4,728,076	-		GFF4729	0.88	-0.4
4,728,076	-		GFF4729	0.88	-0.3
4,728,089	+		GFF4729	0.88	-0.2
4,728,155	+				-1.1
4,728,173	-				-0.9
4,728,175	+				-3.4
4,728,178	-				-0.4
4,728,193	+				-1.0
4,728,193	+				-1.5
4,728,206	-				+0.3
4,728,312	-				+0.0
4,728,329	-				-1.2
4,728,335	+				-0.9
4,728,349	-				+0.6
4,728,351	+				-2.1
4,728,364	+				+0.4
4,728,364	+				-0.4
4,728,364	+				-0.8
4,728,364	+				-2.1
4,728,364	+				+0.8
4,728,372	-				-0.6
4,728,375	-				+1.2
4,728,375	-				+0.2
4,728,420	-		GFF4730	0.10	-1.6
4,728,420	-		GFF4730	0.10	-1.4
4,728,454	+		GFF4730	0.12	+0.3
4,728,454	-		GFF4730	0.12	+0.1
4,728,463	+		GFF4730	0.13	-0.7
4,728,490	-		GFF4730	0.15	-0.7
4,728,490	-		GFF4730	0.15	+1.4
4,728,495	+		GFF4730	0.15	+1.4
4,728,498	-		GFF4730	0.15	-0.4
4,728,503	-		GFF4730	0.16	+0.2
4,728,505	+		GFF4730	0.16	-0.9
4,728,505	+		GFF4730	0.16	+1.1
4,728,513	-		GFF4730	0.16	-0.2
4,728,513	-		GFF4730	0.16	-0.3
4,728,520	+		GFF4730	0.17	+0.5
4,728,525	+		GFF4730	0.17	-1.2
4,728,526	+		GFF4730	0.17	-0.3
4,728,533	-		GFF4730	0.18	-1.5
4,728,536	+		GFF4730	0.18	+0.4
4,728,544	-		GFF4730	0.19	-0.3
4,728,553	+		GFF4730	0.19	-1.3
4,728,553	+		GFF4730	0.19	+0.7
4,728,559	-		GFF4730	0.20	-0.7
4,728,561	-		GFF4730	0.20	+0.7
4,728,569	-		GFF4730	0.20	+0.2
4,728,582	+		GFF4730	0.21	-0.7
4,728,592	+		GFF4730	0.22	+0.0
4,728,595	-		GFF4730	0.22	-1.3
4,728,595	-		GFF4730	0.22	-1.7
4,728,595	-		GFF4730	0.22	+1.0
4,728,616	-		GFF4730	0.24	-0.5
4,728,618	+		GFF4730	0.24	-0.5
4,728,625	+		GFF4730	0.24	-2.1
4,728,626	-		GFF4730	0.24	-1.1
4,728,633	-		GFF4730	0.25	-0.6
4,728,633	-		GFF4730	0.25	-1.4
4,728,633	-		GFF4730	0.25	-2.7
4,728,633	-		GFF4730	0.25	-1.1
4,728,657	+		GFF4730	0.27	-0.9
4,728,657	+		GFF4730	0.27	-0.1
4,728,657	-		GFF4730	0.27	-0.4
4,728,665	-		GFF4730	0.27	-1.2
4,728,673	+		GFF4730	0.28	+0.9
4,728,699	-		GFF4730	0.29	-0.9
4,728,701	+		GFF4730	0.30	+1.0
4,728,701	+		GFF4730	0.30	+0.8
4,728,708	+		GFF4730	0.30	-1.2
4,728,709	-		GFF4730	0.30	-0.1
4,728,721	-		GFF4730	0.31	+1.1
4,728,724	-		GFF4730	0.31	-1.2
4,728,752	+		GFF4730	0.33	-0.9
4,728,778	+		GFF4730	0.35	+1.1
4,728,793	-		GFF4730	0.36	-1.1
4,728,817	+		GFF4730	0.38	-0.7
4,728,822	+		GFF4730	0.38	-1.4
4,728,837	+		GFF4730	0.39	-0.5
4,728,838	+		GFF4730	0.39	+0.0
4,728,845	+		GFF4730	0.40	+0.4
4,728,847	-		GFF4730	0.40	-0.4
4,728,853	-		GFF4730	0.40	-0.1
4,728,921	-		GFF4730	0.45	+0.3
4,728,924	+		GFF4730	0.45	-1.3
4,728,937	-		GFF4730	0.46	-1.4
4,728,942	-		GFF4730	0.46	-0.1
4,728,952	-		GFF4730	0.47	+0.8
4,728,999	-		GFF4730	0.50	+0.0
4,729,001	+		GFF4730	0.51	-0.9
4,729,010	+		GFF4730	0.51	-1.9
4,729,013	-		GFF4730	0.51	-0.9
4,729,018	-		GFF4730	0.52	-0.4
4,729,018	-		GFF4730	0.52	+0.4
4,729,038	+		GFF4730	0.53	-0.2
4,729,048	+		GFF4730	0.54	-0.4
4,729,056	-		GFF4730	0.54	+0.5
4,729,057	+		GFF4730	0.55	-1.2
4,729,072	+		GFF4730	0.56	-0.0
4,729,080	-		GFF4730	0.56	+1.1
4,729,082	+		GFF4730	0.56	-0.3
4,729,089	+		GFF4730	0.57	+0.5
4,729,097	-		GFF4730	0.57	+0.8
4,729,118	+		GFF4730	0.59	-0.5
4,729,131	-		GFF4730	0.60	-1.2
4,729,133	+		GFF4730	0.60	-0.6
4,729,137	+		GFF4730	0.60	+0.1
4,729,139	+		GFF4730	0.60	-0.4
4,729,139	+		GFF4730	0.60	+1.1
4,729,141	-		GFF4730	0.60	+0.3
4,729,147	-		GFF4730	0.61	+0.3
4,729,155	-		GFF4730	0.61	-0.8
4,729,178	-		GFF4730	0.63	+0.1
4,729,232	+		GFF4730	0.67	+0.6
4,729,232	-		GFF4730	0.67	-0.7
4,729,232	-		GFF4730	0.67	-0.2
4,729,247	+		GFF4730	0.68	-0.7
4,729,247	+		GFF4730	0.68	-0.4
4,729,249	+		GFF4730	0.68	-2.4
4,729,249	+		GFF4730	0.68	-0.9
4,729,249	+		GFF4730	0.68	-0.5
4,729,249	+		GFF4730	0.68	-1.2
4,729,249	+		GFF4730	0.68	-0.1
4,729,249	+		GFF4730	0.68	-1.5
4,729,249	+		GFF4730	0.68	-0.2
4,729,249	+		GFF4730	0.68	+0.2
4,729,249	+		GFF4730	0.68	-0.1
4,729,249	+		GFF4730	0.68	-1.3
4,729,254	+		GFF4730	0.68	+0.1
4,729,255	-		GFF4730	0.68	-1.8
4,729,255	-		GFF4730	0.68	-0.3
4,729,255	-		GFF4730	0.68	-0.2
4,729,255	-		GFF4730	0.68	-0.3
4,729,257	-		GFF4730	0.68	+0.0
4,729,257	-		GFF4730	0.68	-1.4
4,729,257	-		GFF4730	0.68	+0.5
4,729,257	-		GFF4730	0.68	+0.2
4,729,257	-		GFF4730	0.68	+0.3
4,729,257	-		GFF4730	0.68	-1.2
4,729,257	-		GFF4730	0.68	-1.2
4,729,262	-		GFF4730	0.69	+1.0
4,729,262	-		GFF4730	0.69	+0.3
4,729,262	-		GFF4730	0.69	-0.1
4,729,262	-		GFF4730	0.69	-0.7
4,729,272	-		GFF4730	0.70	+0.3
4,729,280	-		GFF4730	0.70	+1.5
4,729,282	+		GFF4730	0.70	+1.3
4,729,285	-		GFF4730	0.70	+0.2
4,729,287	-		GFF4730	0.71	-1.7
4,729,290	-		GFF4730	0.71	-1.9
4,729,290	-		GFF4730	0.71	-0.7
4,729,293	+		GFF4730	0.71	-0.7
4,729,293	+		GFF4730	0.71	-0.9
4,729,295	-		GFF4730	0.71	+0.2
4,729,301	-		GFF4730	0.72	+0.3
4,729,301	-		GFF4730	0.72	+0.6
4,729,319	+		GFF4730	0.73	-0.6
4,729,321	-		GFF4730	0.73	-0.9
4,729,338	+		GFF4730	0.74	-2.1
4,729,338	+		GFF4730	0.74	-0.5
4,729,339	-		GFF4730	0.74	-1.6
4,729,346	-		GFF4730	0.75	+1.4
4,729,346	-		GFF4730	0.75	-0.8
4,729,346	-		GFF4730	0.75	+0.1
4,729,366	+		GFF4730	0.76	-1.4
4,729,374	-		GFF4730	0.77	-0.3
4,729,402	+		GFF4730	0.79	+0.6
4,729,402	+		GFF4730	0.79	-0.3
4,729,402	+		GFF4730	0.79	+1.4
4,729,402	+		GFF4730	0.79	+0.1
4,729,407	+		GFF4730	0.79	-1.0
4,729,410	-		GFF4730	0.79	-1.0
4,729,410	-		GFF4730	0.79	+0.3
4,729,410	-		GFF4730	0.79	-1.0
4,729,410	-		GFF4730	0.79	-0.9
4,729,501	-		GFF4730	0.86	+0.1
4,729,501	-		GFF4730	0.86	-0.3
4,729,504	+		GFF4730	0.86	+0.1
4,729,530	-		GFF4730	0.88	-1.9
4,729,539	-		GFF4730	0.88	-0.2
4,729,546	+		GFF4730	0.89	+0.6
4,729,567	-				+0.6
4,729,578	-				-0.2
4,729,585	+				+0.2
4,729,593	-				+1.0
4,729,593	-				-1.0
4,729,596	+				-0.3
4,729,596	+				-1.4
4,729,596	+				-2.4
4,729,603	-				-2.4
4,729,604	-				+1.0
4,729,604	-				-1.7
4,729,604	-				+1.2
4,729,604	-				-0.3
4,729,604	-				-2.2
4,729,623	+				+0.6
4,729,640	+				-2.8
4,729,640	+				-0.9
4,729,640	+				+0.4
4,729,648	-				-0.6
4,729,672	+				-0.3
4,729,740	+				-0.7
4,729,740	+				-0.8
4,729,740	+				-1.0
4,729,740	+				+0.0
4,729,740	+				+0.4
4,729,748	-				-0.3
4,729,748	-				+0.3
4,729,748	-				-1.3
4,729,748	-				+0.5
4,729,748	-				-0.8
4,729,766	+				+1.9
4,729,800	+				+0.4
4,729,808	-				-0.1
4,729,817	+				+0.2
4,729,817	+				-2.4
4,729,825	-				+0.2
4,729,825	-				-0.8
4,729,825	-				-0.9
4,729,827	+				-2.2
4,729,827	+				-0.2
4,729,835	-				-2.2
4,729,849	+				-1.4
4,729,861	+				-1.2
4,729,863	+				-0.1
4,729,878	+				+0.8
4,729,887	+				-1.7
4,729,897	+				-1.4
4,729,897	+				+0.6
4,729,905	-				-1.0
4,729,905	-				-0.1
4,729,905	-				-0.2
4,729,905	-				+0.7
4,729,934	+				+0.1
4,729,942	-				-1.9
4,729,942	-				+1.2
4,730,009	-				-0.7
4,730,039	-		GFF4731	0.10	+0.7
4,730,055	-		GFF4731	0.11	-1.0
4,730,077	+		GFF4731	0.13	-0.4
4,730,077	+		GFF4731	0.13	-0.3
4,730,077	+		GFF4731	0.13	+0.2
4,730,082	+		GFF4731	0.13	-1.7
4,730,082	+		GFF4731	0.13	+0.9
4,730,082	+		GFF4731	0.13	-1.9
4,730,082	+		GFF4731	0.13	+0.0
4,730,085	-		GFF4731	0.13	-0.4
4,730,087	+		GFF4731	0.13	-1.1
4,730,090	-		GFF4731	0.13	+0.2
4,730,090	-		GFF4731	0.13	-0.5
4,730,090	-		GFF4731	0.13	+0.4
4,730,090	-		GFF4731	0.13	-0.4
4,730,092	+		GFF4731	0.13	+0.1
4,730,101	-		GFF4731	0.14	-0.2
4,730,157	-		GFF4731	0.17	-2.2
4,730,187	+		GFF4731	0.19	-0.4
4,730,195	+		GFF4731	0.19	-1.4
4,730,195	+		GFF4731	0.19	+0.1
4,730,195	+		GFF4731	0.19	-1.2
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