Strain Fitness in Sphingobium sp. HT1-2 around GFF4648

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,646,298	-				-0.7
4,646,318	+				+0.4
4,646,318	+				-0.3
4,646,326	-		GFF4647	0.11	-0.8
4,646,342	-		GFF4647	0.12	+0.0
4,646,359	+		GFF4647	0.14	+0.4
4,646,359	+		GFF4647	0.14	+0.1
4,646,359	+		GFF4647	0.14	+1.0
4,646,359	+		GFF4647	0.14	+0.2
4,646,359	+		GFF4647	0.14	-0.2
4,646,359	+		GFF4647	0.14	-1.1
4,646,365	+		GFF4647	0.14	+1.3
4,646,365	+		GFF4647	0.14	+0.3
4,646,367	-		GFF4647	0.14	-1.0
4,646,367	-		GFF4647	0.14	-0.7
4,646,373	-		GFF4647	0.15	-0.7
4,646,405	+		GFF4647	0.18	+0.6
4,646,410	+		GFF4647	0.18	-0.4
4,646,410	+		GFF4647	0.18	-0.9
4,646,440	+		GFF4647	0.21	-0.4
4,646,448	-		GFF4647	0.22	-0.1
4,646,450	+		GFF4647	0.22	-2.9
4,646,453	-		GFF4647	0.22	+0.3
4,646,458	-		GFF4647	0.23	-0.6
4,646,458	-		GFF4647	0.23	+0.1
4,646,481	-		GFF4647	0.25	-0.8
4,646,490	+		GFF4647	0.26	-1.4
4,646,492	+		GFF4647	0.26	+0.5
4,646,496	-		GFF4647	0.26	-1.7
4,646,504	+		GFF4647	0.27	+0.7
4,646,504	+		GFF4647	0.27	-1.8
4,646,504	+		GFF4647	0.27	+0.4
4,646,505	-		GFF4647	0.27	-1.3
4,646,509	+		GFF4647	0.27	+1.7
4,646,512	-		GFF4647	0.28	+0.6
4,646,512	-		GFF4647	0.28	+0.0
4,646,512	-		GFF4647	0.28	-2.4
4,646,512	-		GFF4647	0.28	-0.7
4,646,512	-		GFF4647	0.28	-2.1
4,646,516	+		GFF4647	0.28	+0.0
4,646,523	+		GFF4647	0.29	-1.0
4,646,529	-		GFF4647	0.29	-0.1
4,646,579	-		GFF4647	0.34	-0.5
4,646,584	+		GFF4647	0.34	+1.0
4,646,584	+		GFF4647	0.34	+1.0
4,646,592	-		GFF4647	0.35	-1.3
4,646,592	-		GFF4647	0.35	-0.8
4,646,597	-		GFF4647	0.36	+0.8
4,646,610	+		GFF4647	0.37	+1.1
4,646,659	-		GFF4647	0.41	-1.7
4,646,709	-		GFF4647	0.46	-0.0
4,646,709	-		GFF4647	0.46	+1.1
4,646,716	+		GFF4647	0.47	+0.4
4,646,722	-		GFF4647	0.47	-0.1
4,646,757	-		GFF4647	0.50	+1.4
4,646,766	+		GFF4647	0.51	+0.1
4,646,779	-		GFF4647	0.52	-1.4
4,646,779	-		GFF4647	0.52	-0.9
4,646,782	+		GFF4647	0.53	-0.6
4,646,790	-		GFF4647	0.53	-0.5
4,646,792	+		GFF4647	0.53	-0.6
4,646,792	+		GFF4647	0.53	+0.2
4,646,792	+		GFF4647	0.53	-0.3
4,646,792	+		GFF4647	0.53	-0.1
4,646,792	+		GFF4647	0.53	-0.2
4,646,792	+		GFF4647	0.53	-2.4
4,646,792	+		GFF4647	0.53	-3.2
4,646,792	+		GFF4647	0.53	+0.1
4,646,792	+		GFF4647	0.53	-2.0
4,646,792	+		GFF4647	0.53	-1.0
4,646,792	+		GFF4647	0.53	+0.0
4,646,792	+		GFF4647	0.53	+0.0
4,646,800	+		GFF4647	0.54	-0.8
4,646,800	-		GFF4647	0.54	+0.3
4,646,800	-		GFF4647	0.54	-0.8
4,646,800	-		GFF4647	0.54	+0.2
4,646,800	-		GFF4647	0.54	+0.3
4,646,800	-		GFF4647	0.54	-1.1
4,646,800	-		GFF4647	0.54	+0.0
4,646,800	-		GFF4647	0.54	-0.8
4,646,805	-		GFF4647	0.55	-0.1
4,646,814	+		GFF4647	0.56	-0.5
4,646,838	+		GFF4647	0.58	-0.4
4,646,842	+		GFF4647	0.58	-0.1
4,646,844	+		GFF4647	0.58	-0.9
4,646,854	+		GFF4647	0.59	-0.8
4,646,854	-		GFF4647	0.59	+0.1
4,646,854	-		GFF4647	0.59	-0.0
4,646,862	-		GFF4647	0.60	+0.2
4,646,923	+		GFF4647	0.66	-0.5
4,646,952	+		GFF4647	0.68	-0.1
4,646,960	-		GFF4647	0.69	-1.4
4,646,965	-		GFF4647	0.69	-0.6
4,646,965	-		GFF4647	0.69	-0.6
4,646,970	-		GFF4647	0.70	+0.0
4,646,972	+		GFF4647	0.70	+0.3
4,646,980	-		GFF4647	0.71	-0.9
4,646,984	+		GFF4647	0.71	+0.2
4,647,018	+		GFF4647	0.74	-1.7
4,647,026	-		GFF4647	0.75	-1.4
4,647,049	-		GFF4647	0.77	-1.4
4,647,067	-		GFF4647	0.79	+0.8
4,647,077	-		GFF4647	0.80	+0.6
4,647,098	-		GFF4647	0.82	+1.1
4,647,098	-		GFF4647	0.82	+0.4
4,647,112	+		GFF4647	0.83	+0.8
4,647,114	+		GFF4647	0.83	-1.1
4,647,114	+		GFF4647	0.83	-0.8
4,647,129	+		GFF4647	0.85	-0.2
4,647,131	+		GFF4647	0.85	-0.6
4,647,131	+		GFF4647	0.85	-1.9
4,647,133	+		GFF4647	0.85	-1.2
4,647,139	-		GFF4647	0.85	-1.0
4,647,141	-		GFF4647	0.86	-0.7
4,647,141	-		GFF4647	0.86	+0.6
4,647,152	+		GFF4647	0.87	-2.3
4,647,152	+		GFF4647	0.87	-0.7
4,647,152	+		GFF4647	0.87	+0.4
4,647,152	+		GFF4647	0.87	-0.5
4,647,152	+		GFF4647	0.87	-1.0
4,647,152	+		GFF4647	0.87	+0.1
4,647,152	+		GFF4647	0.87	-0.6
4,647,152	+		GFF4647	0.87	-0.4
4,647,152	+		GFF4647	0.87	+0.3
4,647,158	+		GFF4647	0.87	-0.9
4,647,160	-		GFF4647	0.87	+0.2
4,647,160	-		GFF4647	0.87	-0.7
4,647,160	-		GFF4647	0.87	-0.3
4,647,160	-		GFF4647	0.87	-0.4
4,647,160	-		GFF4647	0.87	-1.4
4,647,160	-		GFF4647	0.87	-1.7
4,647,160	-		GFF4647	0.87	-0.2
4,647,169	+		GFF4647	0.88	-0.3
4,647,171	-		GFF4647	0.88	+1.9
4,647,177	-		GFF4647	0.89	-2.3
4,647,177	-		GFF4647	0.89	-1.5
4,647,179	+		GFF4647	0.89	-0.0
4,647,185	+		GFF4647	0.90	-1.3
4,647,187	-		GFF4647	0.90	-1.0
4,647,192	+				-0.2
4,647,192	+				+0.0
4,647,192	+				+0.5
4,647,192	+				+0.4
4,647,192	+				-0.1
4,647,192	+				+0.1
4,647,200	-				-0.8
4,647,200	-				-0.0
4,647,200	-				-0.2
4,647,217	+				+0.3
4,647,225	-				-1.6
4,647,251	-				+0.8
4,647,251	-				+0.7
4,647,252	-				+0.1
4,647,252	-				-0.7
4,647,367	-		GFF4648	0.11	-0.5
4,647,374	+		GFF4648	0.13	-1.4
4,647,397	+		GFF4648	0.16	-0.4
4,647,403	-		GFF4648	0.17	+0.4
4,647,412	-		GFF4648	0.18	-0.6
4,647,445	-		GFF4648	0.24	+0.8
4,647,451	-		GFF4648	0.24	-0.2
4,647,453	+		GFF4648	0.25	-1.2
4,647,456	-		GFF4648	0.25	-1.8
4,647,458	+		GFF4648	0.26	+0.2
4,647,458	+		GFF4648	0.26	-2.1
4,647,458	+		GFF4648	0.26	+0.0
4,647,458	+		GFF4648	0.26	+0.0
4,647,466	+		GFF4648	0.27	+0.7
4,647,495	-		GFF4648	0.31	-1.3
4,647,557	+		GFF4648	0.41	-2.3
4,647,565	+		GFF4648	0.42	+0.9
4,647,565	+		GFF4648	0.42	-0.9
4,647,565	+		GFF4648	0.42	-0.6
4,647,565	+		GFF4648	0.42	-0.7
4,647,565	-		GFF4648	0.42	+0.5
4,647,566	-		GFF4648	0.42	-1.8
4,647,570	-		GFF4648	0.43	+0.7
4,647,573	-		GFF4648	0.43	-0.1
4,647,573	-		GFF4648	0.43	-0.4
4,647,573	-		GFF4648	0.43	+0.7
4,647,578	-		GFF4648	0.44	+0.3
4,647,578	-		GFF4648	0.44	-0.9
4,647,580	-		GFF4648	0.44	+0.2
4,647,580	-		GFF4648	0.44	-0.5
4,647,584	+		GFF4648	0.45	-1.1
4,647,585	+		GFF4648	0.45	+0.8
4,647,585	+		GFF4648	0.45	-0.1
4,647,614	+		GFF4648	0.50	-1.8
4,647,620	-		GFF4648	0.51	-0.6
4,647,629	+		GFF4648	0.52	-0.2
4,647,637	-		GFF4648	0.53	-0.2
4,647,642	+		GFF4648	0.54	+0.9
4,647,691	+		GFF4648	0.62	-0.5
4,647,691	+		GFF4648	0.62	-0.6
4,647,692	-		GFF4648	0.62	-0.7
4,647,692	-		GFF4648	0.62	+0.4
4,647,701	+		GFF4648	0.63	+0.2
4,647,704	+		GFF4648	0.64	-1.1
4,647,704	+		GFF4648	0.64	+0.4
4,647,704	+		GFF4648	0.64	-0.8
4,647,706	+		GFF4648	0.64	-1.3
4,647,706	+		GFF4648	0.64	+0.1
4,647,712	-		GFF4648	0.65	-0.5
4,647,714	+		GFF4648	0.65	-0.2
4,647,714	-		GFF4648	0.65	-0.8
4,647,714	-		GFF4648	0.65	-2.1
4,647,731	+		GFF4648	0.68	-1.6
4,647,731	+		GFF4648	0.68	+1.4
4,647,731	+		GFF4648	0.68	-1.6
4,647,739	-		GFF4648	0.69	-0.2
4,647,758	-		GFF4648	0.72	+1.1
4,647,759	-		GFF4648	0.72	+1.1
4,647,763	+		GFF4648	0.73	+0.7
4,647,773	+		GFF4648	0.74	-1.8
4,647,777	+		GFF4648	0.75	-0.6
4,647,781	-		GFF4648	0.76	-0.0
4,647,804	-		GFF4648	0.79	+0.7
4,647,806	+		GFF4648	0.80	-0.3
4,647,806	+		GFF4648	0.80	-0.4
4,647,806	+		GFF4648	0.80	-0.8
4,647,806	+		GFF4648	0.80	-1.4
4,647,814	-		GFF4648	0.81	+0.1
4,647,829	-		GFF4648	0.83	-0.5
4,647,832	+		GFF4648	0.84	-0.6
4,647,833	+		GFF4648	0.84	-0.2
4,647,833	+		GFF4648	0.84	-1.4
4,647,840	-		GFF4648	0.85	-0.7
4,647,857	+		GFF4648	0.87	-0.6
4,647,865	-		GFF4648	0.89	+1.1
4,647,891	-				+0.6
4,647,925	-				-0.2
4,647,935	-				-0.5
4,647,935	-				+0.9
4,647,940	-				+0.2
4,647,943	+				-2.1
4,647,979	+				+0.0
4,647,984	+				+1.0
4,648,030	+				-0.4
4,648,036	-				-1.1
4,648,040	+				+0.1
4,648,040	+				+0.2
4,648,040	+				-1.4
4,648,040	+				-1.7
4,648,056	+				+0.4
4,648,057	-				-0.9
4,648,062	-				-0.7
4,648,076	-				-1.8
4,648,081	-		GFF4649	0.11	-0.8
4,648,083	+		GFF4649	0.12	-1.9
4,648,119	-		GFF4649	0.23	-0.1
4,648,131	+		GFF4649	0.27	+0.0
4,648,131	+		GFF4649	0.27	+0.4
4,648,134	-		GFF4649	0.27	-0.5
4,648,140	+		GFF4649	0.29	+0.3
4,648,141	-		GFF4649	0.30	+0.8
4,648,147	-		GFF4649	0.31	-0.6
4,648,176	+		GFF4649	0.40	-0.7
4,648,179	-		GFF4649	0.41	+0.0
4,648,184	-		GFF4649	0.43	+1.4
4,648,209	+		GFF4649	0.51	-0.0
4,648,209	+		GFF4649	0.51	+0.0
4,648,209	+		GFF4649	0.51	-0.6
4,648,209	+		GFF4649	0.51	-0.4
4,648,209	+		GFF4649	0.51	+1.2
4,648,209	+		GFF4649	0.51	+0.4
4,648,209	+		GFF4649	0.51	-0.2
4,648,209	+		GFF4649	0.51	+0.1
4,648,209	+		GFF4649	0.51	-0.4
4,648,209	+		GFF4649	0.51	-0.5
4,648,217	-		GFF4649	0.53	+0.6
4,648,217	-		GFF4649	0.53	-1.6
4,648,217	-		GFF4649	0.53	+0.7
4,648,217	-		GFF4649	0.53	-0.8
4,648,217	-		GFF4649	0.53	-0.7
4,648,217	-		GFF4649	0.53	+0.6
4,648,217	-		GFF4649	0.53	-1.6
4,648,217	-		GFF4649	0.53	+0.2
4,648,217	-		GFF4649	0.53	+0.4
4,648,217	-		GFF4649	0.53	+0.6
4,648,232	+		GFF4649	0.58	+1.0
4,648,235	-		GFF4649	0.59	-2.5
4,648,235	-		GFF4649	0.59	-2.1
4,648,240	-		GFF4649	0.60	-0.3
4,648,240	-		GFF4649	0.60	+0.1
4,648,240	-		GFF4649	0.60	-2.0
4,648,240	-		GFF4649	0.60	+1.2
4,648,246	+		GFF4649	0.62	+1.4
4,648,282	+		GFF4649	0.73	+0.0
4,648,292	+		GFF4649	0.76	+0.4
4,648,308	+		GFF4649	0.81	+0.6
4,648,317	-		GFF4649	0.84	-0.4
4,648,338	+				-0.0
4,648,362	+				+0.7
4,648,362	+				+1.2
4,648,362	+				-0.2
4,648,362	+				-0.6
4,648,362	+				+1.2
4,648,362	+				+0.0
4,648,362	+				-3.4
4,648,362	+				+1.0
4,648,365	-				-2.1
4,648,370	-				-1.7
4,648,370	-				+0.1
4,648,370	-				-2.1
4,648,370	-				-0.2
4,648,370	-				+0.4
4,648,370	-				+0.6
4,648,370	-				+0.4
4,648,370	-				+0.4
4,648,370	-				-1.1
4,648,370	-				-1.3
4,648,379	+				-0.7
4,648,398	-				-0.4
4,648,404	+				-1.4
4,648,404	-				-0.6
4,648,420	+				-0.8
4,648,438	-				+0.0
4,648,455	-				-0.6
4,648,485	+				-0.5
4,648,493	-				-0.8
4,648,529	+		GFF4650	0.12	+0.2
4,648,535	-		GFF4650	0.13	-1.4
4,648,535	-		GFF4650	0.13	-1.0
4,648,535	-		GFF4650	0.13	-1.4
4,648,537	+		GFF4650	0.13	-0.1
4,648,537	-		GFF4650	0.13	+0.5
4,648,545	-		GFF4650	0.14	-1.5
4,648,565	+		GFF4650	0.15	-2.2
4,648,572	-		GFF4650	0.16	-0.1
4,648,573	-		GFF4650	0.16	+0.0
4,648,573	-		GFF4650	0.16	+0.8
4,648,573	-		GFF4650	0.16	+0.9
4,648,576	+		GFF4650	0.16	+0.0
4,648,609	-		GFF4650	0.19	+1.7
4,648,639	-		GFF4650	0.21	+0.2
4,648,640	+		GFF4650	0.21	+0.2
4,648,640	-		GFF4650	0.21	+0.0
4,648,693	-		GFF4650	0.26	-1.4
4,648,748	-		GFF4650	0.30	-2.1
4,648,757	+		GFF4650	0.31	-1.6
4,648,764	+		GFF4650	0.31	-0.6
4,648,765	-		GFF4650	0.32	-0.4
4,648,788	+		GFF4650	0.33	+0.5
4,648,801	-		GFF4650	0.34	-1.0
4,648,844	-		GFF4650	0.38	+0.2
4,648,859	-		GFF4650	0.39	-1.7
4,648,859	-		GFF4650	0.39	+0.5
4,648,874	+		GFF4650	0.40	+0.5
4,648,875	-		GFF4650	0.41	-0.7
4,648,877	+		GFF4650	0.41	+0.8
4,648,886	+		GFF4650	0.41	-0.4
4,648,892	+		GFF4650	0.42	+0.3
4,648,914	-		GFF4650	0.44	-0.6
4,648,927	+		GFF4650	0.45	+0.6
4,648,931	+		GFF4650	0.45	+0.4
4,648,934	-		GFF4650	0.45	+0.6