Strain Fitness in Sphingobium sp. HT1-2 around GFF4557

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,548,408	+		GFF4556	0.51	-0.0
4,548,433	+		GFF4556	0.54	+0.6
4,548,440	+		GFF4556	0.54	+0.5
4,548,441	-		GFF4556	0.54	-0.3
4,548,458	-		GFF4556	0.56	-1.3
4,548,481	+		GFF4556	0.58	-1.6
4,548,484	+		GFF4556	0.59	-3.0
4,548,485	+		GFF4556	0.59	+0.6
4,548,486	+		GFF4556	0.59	-1.4
4,548,492	-		GFF4556	0.59	-0.5
4,548,525	-		GFF4556	0.63	-0.0
4,548,544	-		GFF4556	0.64	-1.1
4,548,545	-		GFF4556	0.65	-0.7
4,548,561	-		GFF4556	0.66	-0.9
4,548,561	-		GFF4556	0.66	-2.3
4,548,591	+		GFF4556	0.69	-0.3
4,548,604	-		GFF4556	0.70	-0.4
4,548,622	+		GFF4556	0.72	-1.9
4,548,622	+		GFF4556	0.72	-1.3
4,548,622	+		GFF4556	0.72	-0.1
4,548,628	+		GFF4556	0.73	+0.4
4,548,630	-		GFF4556	0.73	-1.9
4,548,656	+		GFF4556	0.76	-0.7
4,548,664	-		GFF4556	0.76	+0.4
4,548,666	+		GFF4556	0.77	+0.2
4,548,666	+		GFF4556	0.77	-0.8
4,548,674	-		GFF4556	0.77	-0.8
4,548,678	+		GFF4556	0.78	-1.1
4,548,683	-		GFF4556	0.78	+0.3
4,548,712	+		GFF4556	0.81	+0.3
4,548,723	+		GFF4556	0.82	-1.2
4,548,728	+		GFF4556	0.83	+0.0
4,548,728	+		GFF4556	0.83	+0.1
4,548,741	-		GFF4556	0.84	+0.3
4,548,743	+		GFF4556	0.84	-0.2
4,548,743	+		GFF4556	0.84	-1.1
4,548,743	+		GFF4556	0.84	-0.1
4,548,743	+		GFF4556	0.84	+0.5
4,548,743	+		GFF4556	0.84	+0.2
4,548,743	+		GFF4556	0.84	+0.3
4,548,743	+		GFF4556	0.84	-1.3
4,548,743	+		GFF4556	0.84	+0.0
4,548,743	+		GFF4556	0.84	+1.9
4,548,751	-		GFF4556	0.85	-1.3
4,548,751	-		GFF4556	0.85	-1.7
4,548,751	-		GFF4556	0.85	-1.3
4,548,751	-		GFF4556	0.85	+0.5
4,548,751	-		GFF4556	0.85	-0.6
4,548,763	+		GFF4556	0.86	-0.1
4,548,763	+		GFF4556	0.86	-0.2
4,548,763	+		GFF4556	0.86	-0.6
4,548,763	+		GFF4556	0.86	+0.6
4,548,763	+		GFF4556	0.86	+0.4
4,548,771	-		GFF4556	0.87	+2.1
4,548,771	-		GFF4556	0.87	-1.3
4,548,776	-		GFF4556	0.87	-2.5
4,548,791	+		GFF4556	0.89	-0.9
4,548,812	-				+0.0
4,548,823	-				+0.7
4,548,825	+				+0.2
4,548,825	+				+0.4
4,548,825	+				-1.5
4,548,825	+				-2.0
4,548,825	+				+0.4
4,548,825	+				-0.1
4,548,825	+				-2.3
4,548,827	+				-0.4
4,548,827	+				+0.2
4,548,827	+				-1.8
4,548,827	+				-0.9
4,548,827	+				-0.3
4,548,827	+				+0.4
4,548,827	+				-1.2
4,548,830	-				+0.3
4,548,833	-				-2.2
4,548,833	-				-0.4
4,548,833	-				-0.3
4,548,833	-				-2.1
4,548,833	-				-0.4
4,548,833	-				+0.2
4,548,833	-				-2.5
4,548,833	-				-0.0
4,548,835	-				-1.8
4,548,835	-				-0.5
4,548,848	+				+0.1
4,548,858	+				-1.4
4,548,860	+				-1.3
4,548,865	+				+0.7
4,548,868	-				-0.4
4,548,868	-				-0.9
4,548,871	-				-0.9
4,548,888	+				-0.6
4,548,892	+				-1.8
4,548,892	+				+0.5
4,548,896	-				+0.4
4,548,896	-				-0.4
4,548,896	-				+0.5
4,548,900	-				+0.1
4,548,900	-				+0.1
4,548,900	-				-1.1
4,548,900	-				-0.0
4,548,900	-				-0.1
4,548,900	-				+0.2
4,548,911	+				+0.0
4,548,960	-				-1.5
4,548,974	-				+0.2
4,549,003	-				-1.0
4,549,003	-				-0.1
4,549,009	-				-0.3
4,549,073	+				-0.0
4,549,099	-				-1.3
4,549,099	-				+0.8
4,549,103	+				-0.1
4,549,104	-				-0.9
4,549,104	-				+0.7
4,549,112	-				-0.3
4,549,117	+				-1.4
4,549,117	+				+0.6
4,549,127	+				+1.0
4,549,127	+				+0.7
4,549,127	+				-0.6
4,549,127	+				-0.4
4,549,130	-				-0.7
4,549,132	+				+0.2
4,549,132	+				+0.1
4,549,135	-				-0.2
4,549,135	-				-0.0
4,549,149	-				-1.9
4,549,149	-				+0.3
4,549,149	-				+1.0
4,549,161	+				-0.8
4,549,161	+				-0.6
4,549,161	+				+0.4
4,549,161	+				-1.1
4,549,171	-				+0.9
4,549,204	+				-0.8
4,549,204	+				-2.3
4,549,204	+				+0.3
4,549,207	-				+0.8
4,549,212	-				-0.5
4,549,238	-				-2.7
4,549,242	+				+1.1
4,549,242	+				-1.0
4,549,245	-				+0.6
4,549,250	-				-1.3
4,549,250	-				-2.5
4,549,250	-				-1.0
4,549,258	+				+0.5
4,549,258	+				-0.1
4,549,258	+				-1.3
4,549,258	+				-1.8
4,549,258	+				-0.2
4,549,266	-				-0.4
4,549,273	+				-0.1
4,549,273	+				+0.6
4,549,273	+				-0.2
4,549,281	-				-2.0
4,549,297	-				-1.8
4,549,315	-				-0.6
4,549,324	+				+1.3
4,549,326	+				-0.0
4,549,331	+				-2.4
4,549,331	+				-1.3
4,549,331	+				-1.2
4,549,334	-				-0.1
4,549,334	-				+0.3
4,549,334	-				-1.1
4,549,334	-				-0.1
4,549,339	-				-2.1
4,549,342	+				+0.2
4,549,349	-				-1.7
4,549,369	+				-0.5
4,549,379	+				-0.6
4,549,379	+				-1.7
4,549,379	+				-0.9
4,549,379	-				-1.7
4,549,384	+				-0.2
4,549,384	+				-0.5
4,549,387	-				-1.9
4,549,387	-				-0.0
4,549,387	-				-0.6
4,549,387	-				-0.3
4,549,387	-				-1.2
4,549,391	+				-0.6
4,549,391	+				+1.1
4,549,391	+				+0.3
4,549,392	-				-1.4
4,549,392	-				+0.0
4,549,392	-				-0.5
4,549,397	+				-0.4
4,549,399	-				-1.3
4,549,409	+				-0.8
4,549,414	+				-1.2
4,549,414	+				-0.3
4,549,422	-				+0.1
4,549,422	-				-1.9
4,549,462	+				-0.1
4,549,462	+				-0.5
4,549,462	-				+0.2
4,549,467	-				-1.2
4,549,495	-		GFF4557	0.10	-0.5
4,549,497	+		GFF4557	0.10	+1.0
4,549,502	+		GFF4557	0.11	-0.6
4,549,502	+		GFF4557	0.11	-0.1
4,549,505	+		GFF4557	0.11	+0.6
4,549,510	-		GFF4557	0.11	-1.7
4,549,530	+		GFF4557	0.12	-0.3
4,549,530	+		GFF4557	0.12	-0.0
4,549,530	+		GFF4557	0.12	-2.1
4,549,538	-		GFF4557	0.13	-0.4
4,549,538	-		GFF4557	0.13	-0.4
4,549,538	-		GFF4557	0.13	+0.4
4,549,549	-		GFF4557	0.14	-1.2
4,549,561	-		GFF4557	0.14	+0.3
4,549,586	-		GFF4557	0.16	+0.8
4,549,638	+		GFF4557	0.19	-0.3
4,549,679	+		GFF4557	0.21	+0.7
4,549,679	+		GFF4557	0.21	-2.8
4,549,687	-		GFF4557	0.22	-2.2
4,549,687	-		GFF4557	0.22	-1.7
4,549,715	+		GFF4557	0.24	-0.6
4,549,725	-		GFF4557	0.24	-0.5
4,549,742	-		GFF4557	0.25	+0.5
4,549,752	+		GFF4557	0.26	+0.2
4,549,754	+		GFF4557	0.26	-2.4
4,549,759	+		GFF4557	0.26	-2.6
4,549,759	+		GFF4557	0.26	-0.1
4,549,759	+		GFF4557	0.26	-0.8
4,549,759	+		GFF4557	0.26	-1.0
4,549,759	+		GFF4557	0.26	-0.3
4,549,794	+		GFF4557	0.28	-1.1
4,549,802	+		GFF4557	0.29	-0.5
4,549,802	+		GFF4557	0.29	-0.3
4,549,802	-		GFF4557	0.29	-0.4
4,549,810	-		GFF4557	0.29	-0.5
4,549,815	-		GFF4557	0.30	+0.7
4,549,833	+		GFF4557	0.31	-0.7
4,549,841	-		GFF4557	0.31	-0.0
4,549,841	-		GFF4557	0.31	+0.5
4,549,841	-		GFF4557	0.31	-0.8
4,549,848	+		GFF4557	0.32	+0.2
4,549,848	+		GFF4557	0.32	+0.1
4,549,851	-		GFF4557	0.32	-0.7
4,549,853	+		GFF4557	0.32	+0.2
4,549,853	+		GFF4557	0.32	-1.6
4,549,856	-		GFF4557	0.32	-0.8
4,549,856	-		GFF4557	0.32	-1.5
4,549,861	-		GFF4557	0.32	+1.5
4,549,862	+		GFF4557	0.32	-0.7
4,549,862	+		GFF4557	0.32	-0.4
4,549,862	+		GFF4557	0.32	-0.2
4,549,870	-		GFF4557	0.33	-0.8
4,549,904	+		GFF4557	0.35	-0.3
4,549,904	+		GFF4557	0.35	-0.8
4,549,909	+		GFF4557	0.35	-0.5
4,549,909	+		GFF4557	0.35	-0.7
4,549,909	+		GFF4557	0.35	-1.3
4,549,909	+		GFF4557	0.35	-0.4
4,549,909	+		GFF4557	0.35	-0.9
4,549,909	+		GFF4557	0.35	+0.4
4,549,909	+		GFF4557	0.35	+1.3
4,549,912	-		GFF4557	0.36	-1.8
4,549,912	-		GFF4557	0.36	-0.8
4,549,912	-		GFF4557	0.36	-0.0
4,549,916	+		GFF4557	0.36	-0.3
4,549,916	+		GFF4557	0.36	-0.1
4,549,917	-		GFF4557	0.36	+1.4
4,549,917	-		GFF4557	0.36	+0.1
4,549,924	-		GFF4557	0.36	-0.8
4,549,924	-		GFF4557	0.36	-0.5
4,549,935	+		GFF4557	0.37	+0.7
4,549,937	+		GFF4557	0.37	-0.2
4,549,943	-		GFF4557	0.37	-0.2
4,549,958	+		GFF4557	0.38	-1.7
4,549,958	+		GFF4557	0.38	-1.5
4,549,958	+		GFF4557	0.38	+1.4
4,549,958	+		GFF4557	0.38	-1.9
4,549,958	+		GFF4557	0.38	-0.4
4,549,997	+		GFF4557	0.41	-0.5
4,549,997	+		GFF4557	0.41	-0.4
4,549,997	+		GFF4557	0.41	-0.3
4,549,998	+		GFF4557	0.41	-0.8
4,550,000	-		GFF4557	0.41	-0.3
4,550,005	-		GFF4557	0.41	+0.4
4,550,007	+		GFF4557	0.41	-0.2
4,550,018	+		GFF4557	0.42	-0.7
4,550,018	+		GFF4557	0.42	-0.5
4,550,018	+		GFF4557	0.42	+0.0
4,550,020	+		GFF4557	0.42	+0.1
4,550,023	+		GFF4557	0.42	-2.0
4,550,026	-		GFF4557	0.42	-1.6
4,550,026	-		GFF4557	0.42	-0.7
4,550,028	+		GFF4557	0.43	-0.9
4,550,028	+		GFF4557	0.43	-0.1
4,550,028	+		GFF4557	0.43	-0.5
4,550,028	+		GFF4557	0.43	+0.7
4,550,028	+		GFF4557	0.43	+0.1
4,550,028	+		GFF4557	0.43	-0.3
4,550,028	+		GFF4557	0.43	+0.4
4,550,028	+		GFF4557	0.43	+0.5
4,550,028	+		GFF4557	0.43	+0.3
4,550,028	+		GFF4557	0.43	-0.6
4,550,028	-		GFF4557	0.43	+1.2
4,550,034	+		GFF4557	0.43	+0.5
4,550,036	-		GFF4557	0.43	-0.1
4,550,036	-		GFF4557	0.43	-0.5
4,550,043	+		GFF4557	0.43	+0.5
4,550,043	+		GFF4557	0.43	-0.4
4,550,043	+		GFF4557	0.43	+0.4
4,550,051	-		GFF4557	0.44	-1.7
4,550,051	-		GFF4557	0.44	-1.1
4,550,051	-		GFF4557	0.44	-1.6
4,550,051	-		GFF4557	0.44	-0.2
4,550,051	-		GFF4557	0.44	-0.5
4,550,051	-		GFF4557	0.44	-0.4
4,550,060	+		GFF4557	0.44	+0.6
4,550,060	+		GFF4557	0.44	+0.1
4,550,075	+		GFF4557	0.45	-0.1
4,550,091	-		GFF4557	0.46	-1.3
4,550,097	+		GFF4557	0.47	-2.3
4,550,105	-		GFF4557	0.47	+0.3
4,550,107	+		GFF4557	0.47	-0.8
4,550,111	+		GFF4557	0.48	-1.3
4,550,114	+		GFF4557	0.48	+0.1
4,550,114	+		GFF4557	0.48	+0.1
4,550,114	+		GFF4557	0.48	-0.7
4,550,115	-		GFF4557	0.48	+0.2
4,550,122	-		GFF4557	0.48	+0.3
4,550,127	-		GFF4557	0.48	-1.0
4,550,127	-		GFF4557	0.48	-0.8
4,550,127	-		GFF4557	0.48	+0.9
4,550,133	-		GFF4557	0.49	-0.9
4,550,137	+		GFF4557	0.49	+1.1
4,550,145	-		GFF4557	0.50	+1.3
4,550,152	+		GFF4557	0.50	+0.9
4,550,160	+		GFF4557	0.50	-0.2
4,550,179	+		GFF4557	0.52	+1.8
4,550,179	+		GFF4557	0.52	-1.3
4,550,182	+		GFF4557	0.52	-0.5
4,550,208	+		GFF4557	0.53	-2.1
4,550,217	+		GFF4557	0.54	+1.5
4,550,229	-		GFF4557	0.55	+0.1
4,550,229	-		GFF4557	0.55	-0.2
4,550,247	+		GFF4557	0.56	+0.1
4,550,252	+		GFF4557	0.56	-0.4
4,550,252	+		GFF4557	0.56	+0.4
4,550,265	-		GFF4557	0.57	-0.4
4,550,278	+		GFF4557	0.58	+0.8
4,550,278	+		GFF4557	0.58	-0.0
4,550,278	+		GFF4557	0.58	+0.5
4,550,278	+		GFF4557	0.58	+0.8
4,550,278	+		GFF4557	0.58	-0.7
4,550,278	+		GFF4557	0.58	-0.6
4,550,286	-		GFF4557	0.58	-1.3
4,550,286	-		GFF4557	0.58	-2.8
4,550,291	+		GFF4557	0.58	-1.5
4,550,329	-		GFF4557	0.61	-0.4
4,550,329	-		GFF4557	0.61	-1.8
4,550,346	+		GFF4557	0.62	-1.5
4,550,362	+		GFF4557	0.63	-1.8
4,550,365	+		GFF4557	0.63	-0.0
4,550,402	+		GFF4557	0.65	-2.3
4,550,402	+		GFF4557	0.65	-0.8
4,550,410	-		GFF4557	0.66	+0.5
4,550,412	+		GFF4557	0.66	-0.7
4,550,412	+		GFF4557	0.66	+0.8
4,550,420	-		GFF4557	0.66	-1.2
4,550,420	-		GFF4557	0.66	+0.1
4,550,420	-		GFF4557	0.66	-0.1
4,550,442	+		GFF4557	0.68	-2.1
4,550,447	+		GFF4557	0.68	+0.5
4,550,450	-		GFF4557	0.68	-0.1
4,550,450	-		GFF4557	0.68	-1.5
4,550,461	-		GFF4557	0.69	-0.6
4,550,489	+		GFF4557	0.70	-1.7
4,550,489	+		GFF4557	0.70	-0.3
4,550,497	-		GFF4557	0.71	-2.3
4,550,497	-		GFF4557	0.71	-0.3
4,550,497	-		GFF4557	0.71	-0.6
4,550,497	-		GFF4557	0.71	-1.3
4,550,506	-		GFF4557	0.71	-0.8
4,550,514	+		GFF4557	0.72	-0.7
4,550,548	+		GFF4557	0.74	+0.2
4,550,555	-		GFF4557	0.74	-1.0
4,550,558	+		GFF4557	0.75	-0.3
4,550,560	-		GFF4557	0.75	-0.0
4,550,575	-		GFF4557	0.76	-0.5
4,550,575	-		GFF4557	0.76	+0.9
4,550,578	+		GFF4557	0.76	-1.7
4,550,579	+		GFF4557	0.76	+0.9
4,550,579	+		GFF4557	0.76	-0.1
4,550,579	+		GFF4557	0.76	-0.7
4,550,586	-		GFF4557	0.76	-0.1
4,550,587	-		GFF4557	0.76	+0.6
4,550,588	-		GFF4557	0.76	-0.8
4,550,610	-		GFF4557	0.78	-2.2
4,550,623	-		GFF4557	0.78	-0.1
4,550,637	-		GFF4557	0.79	+0.7
4,550,668	+		GFF4557	0.81	-1.3
4,550,671	-		GFF4557	0.81	-1.1
4,550,671	-		GFF4557	0.81	+0.5
4,550,672	+		GFF4557	0.81	-1.2
4,550,676	+		GFF4557	0.82	+0.5
4,550,676	+		GFF4557	0.82	-0.2
4,550,684	-		GFF4557	0.82	-1.1
4,550,740	+		GFF4557	0.86	+0.6
4,550,748	-		GFF4557	0.86	-1.8
4,550,783	-		GFF4557	0.88	-0.9
4,550,783	-		GFF4557	0.88	+0.1
4,550,790	+		GFF4557	0.89	-0.8
4,550,794	+		GFF4557	0.89	-0.0
4,550,794	+		GFF4557	0.89	-0.7
4,550,794	+		GFF4557	0.89	+0.2
4,550,794	+		GFF4557	0.89	+0.3
4,550,795	+		GFF4557	0.89	-1.9
4,550,798	-		GFF4557	0.89	-0.5
4,550,802	-		GFF4557	0.89	-2.1
4,550,802	-		GFF4557	0.89	+1.1
4,550,802	-		GFF4557	0.89	-0.1
4,550,839	+				-0.9
4,550,839	+				-0.7
4,550,839	+				+0.7
4,550,839	+				-1.0
4,550,839	+				-0.4
4,550,842	-				+0.2
4,550,844	+				-0.2
4,550,844	+				-0.7
4,550,844	+				+1.0
4,550,846	-				+0.6
4,550,847	-				+0.5
4,550,849	+				+1.1
4,550,852	-				-1.2
4,550,852	-				-0.5
4,550,852	-				-1.3
4,550,852	-				-0.9
4,550,852	-				-2.1
4,550,854	+				-0.3
4,550,857	-				+0.2
4,550,857	-				-0.8
4,550,857	-				+1.0
4,550,862	-				-1.0
4,550,872	+				-1.8
4,550,879	+				+0.2
4,550,886	-				+0.4
4,550,900	+				+0.1
4,550,909	-				-0.2
4,550,928	+				-0.3
4,550,936	-				-1.8
4,550,942	-				-2.9
4,550,947	-				+0.5
4,550,947	-				+0.6
4,550,965	+				-0.3
4,550,965	+				-1.5
4,551,004	-				-1.6
4,551,030	-				-0.6
4,551,039	+				-1.5
4,551,047	-				-1.3
4,551,063	-				+0.4
4,551,069	+				+0.5
4,551,084	-				+0.1
4,551,084	-				+0.5
4,551,106	-				+1.0
4,551,125	+				-1.8
4,551,133	-		GFF4558	0.13	-1.0
4,551,134	-		GFF4558	0.13	-0.8