Strain Fitness in Sphingobium sp. HT1-2 around GFF4482

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,474,097	-				-0.8
4,474,097	-				+0.1
4,474,097	-				-0.5
4,474,097	-				+0.8
4,474,101	+				-1.0
4,474,108	+				+0.1
4,474,108	+				+0.1
4,474,108	+				+1.0
4,474,108	+				+0.2
4,474,108	+				+0.3
4,474,108	+				+0.2
4,474,116	-				+1.0
4,474,116	-				+0.5
4,474,126	+				-1.6
4,474,129	-				+0.1
4,474,134	+				-0.0
4,474,144	+				-0.2
4,474,144	+				-0.7
4,474,144	+				+0.3
4,474,144	+				+0.1
4,474,144	+				-1.6
4,474,144	+				+0.0
4,474,144	+				-0.1
4,474,152	-		GFF4480	0.11	+0.5
4,474,152	-		GFF4480	0.11	-0.1
4,474,152	-		GFF4480	0.11	+0.2
4,474,155	+		GFF4480	0.12	+0.8
4,474,161	+		GFF4480	0.13	+1.0
4,474,169	-		GFF4480	0.16	-0.5
4,474,169	-		GFF4480	0.16	-0.3
4,474,178	+		GFF4480	0.18	-0.5
4,474,178	+		GFF4480	0.18	-0.2
4,474,186	-		GFF4480	0.20	-0.2
4,474,199	+		GFF4480	0.24	+0.4
4,474,199	+		GFF4480	0.24	-0.9
4,474,204	+		GFF4480	0.25	+0.1
4,474,207	-		GFF4480	0.26	+0.2
4,474,207	-		GFF4480	0.26	-0.6
4,474,212	-		GFF4480	0.27	-0.1
4,474,222	-		GFF4480	0.30	+0.1
4,474,243	-		GFF4480	0.35	+1.0
4,474,256	-		GFF4480	0.39	+0.8
4,474,281	+		GFF4480	0.46	+0.5
4,474,283	+		GFF4480	0.46	+0.8
4,474,288	+		GFF4480	0.48	-0.2
4,474,293	+		GFF4480	0.49	-0.3
4,474,296	-		GFF4480	0.50	+0.2
4,474,301	-		GFF4480	0.51	+1.1
4,474,301	-		GFF4480	0.51	-0.2
4,474,353	+		GFF4480	0.65	-0.8
4,474,358	+		GFF4480	0.66	-0.5
4,474,358	+		GFF4480	0.66	-1.1
4,474,358	+		GFF4480	0.66	+0.3
4,474,358	+		GFF4480	0.66	+0.7
4,474,366	-		GFF4480	0.69	-1.5
4,474,383	-		GFF4480	0.73	+0.5
4,474,383	-		GFF4480	0.73	-0.3
4,474,402	+		GFF4480	0.78	-0.3
4,474,407	+		GFF4480	0.80	-0.3
4,474,409	+		GFF4480	0.80	+1.1
4,474,410	-		GFF4480	0.80	+0.2
4,474,415	-		GFF4480	0.82	-0.9
4,474,415	-		GFF4480	0.82	+0.2
4,474,415	-		GFF4480	0.82	+0.2
4,474,416	-		GFF4480	0.82	+0.6
4,474,417	-		GFF4480	0.82	-0.0
4,474,419	+		GFF4480	0.83	+0.6
4,474,427	-		GFF4480	0.85	+0.7
4,474,457	-				-0.2
4,474,491	+				+0.3
4,474,494	-				+0.6
4,474,514	+				+0.2
4,474,514	+				-2.5
4,474,576	+				+0.7
4,474,587	+				+0.8
4,474,587	+				-0.5
4,474,587	+				-1.3
4,474,595	-				+0.8
4,474,652	-		GFF4481	0.17	-0.4
4,474,667	+		GFF4481	0.20	+1.3
4,474,667	+		GFF4481	0.20	-2.8
4,474,689	+		GFF4481	0.25	-0.7
4,474,689	+		GFF4481	0.25	+0.4
4,474,689	+		GFF4481	0.25	-0.6
4,474,689	+		GFF4481	0.25	+0.6
4,474,689	+		GFF4481	0.25	+1.4
4,474,697	-		GFF4481	0.27	+0.4
4,474,697	-		GFF4481	0.27	-0.2
4,474,697	-		GFF4481	0.27	+0.4
4,474,723	+		GFF4481	0.33	+0.5
4,474,728	+		GFF4481	0.34	+0.1
4,474,728	+		GFF4481	0.34	-0.1
4,474,808	-		GFF4481	0.52	-1.5
4,474,816	+		GFF4481	0.54	-0.6
4,474,840	+		GFF4481	0.59	-0.5
4,474,847	-		GFF4481	0.61	+0.1
4,474,847	-		GFF4481	0.61	-0.6
4,474,847	-		GFF4481	0.61	-2.3
4,474,847	-		GFF4481	0.61	-0.4
4,474,868	-		GFF4481	0.65	-0.6
4,474,878	-		GFF4481	0.68	+1.2
4,474,890	-		GFF4481	0.70	+1.0
4,474,894	+		GFF4481	0.71	-0.5
4,474,915	-		GFF4481	0.76	+1.3
4,474,926	-		GFF4481	0.78	-0.5
4,474,935	+		GFF4481	0.80	-0.3
4,474,951	+		GFF4481	0.84	-0.5
4,474,973	-		GFF4481	0.89	-0.1
4,475,002	-				-1.5
4,475,032	-				-0.9
4,475,034	+				-0.1
4,475,034	+				-1.8
4,475,034	+				+1.0
4,475,034	+				-0.0
4,475,034	+				-0.6
4,475,034	+				-1.6
4,475,034	+				+1.4
4,475,042	-				+0.8
4,475,047	+				-0.5
4,475,055	-				-0.7
4,475,055	-				-2.6
4,475,065	+				+0.2
4,475,073	-				-1.5
4,475,205	-		GFF4482	0.23	+1.1
4,475,208	-		GFF4482	0.23	+1.5
4,475,254	+		GFF4482	0.31	+0.6
4,475,254	+		GFF4482	0.31	-0.1
4,475,254	+		GFF4482	0.31	-0.5
4,475,271	+		GFF4482	0.33	-2.4
4,475,274	-		GFF4482	0.34	+0.1
4,475,279	-		GFF4482	0.35	+1.9
4,475,279	-		GFF4482	0.35	-0.7
4,475,279	-		GFF4482	0.35	-2.2
4,475,281	+		GFF4482	0.35	-0.0
4,475,281	+		GFF4482	0.35	-1.5
4,475,284	-		GFF4482	0.35	+0.3
4,475,289	-		GFF4482	0.36	-0.2
4,475,316	-		GFF4482	0.41	+0.4
4,475,346	-		GFF4482	0.46	-1.4
4,475,358	+		GFF4482	0.48	+0.5
4,475,390	+		GFF4482	0.53	-1.5
4,475,392	-		GFF4482	0.53	+0.3
4,475,393	+		GFF4482	0.53	+1.1
4,475,398	+		GFF4482	0.54	+1.1
4,475,398	+		GFF4482	0.54	-0.8
4,475,398	+		GFF4482	0.54	-0.9
4,475,400	-		GFF4482	0.54	-0.1
4,475,424	+		GFF4482	0.58	+0.1
4,475,432	-		GFF4482	0.60	-0.2
4,475,436	+		GFF4482	0.60	+1.1
4,475,443	+		GFF4482	0.61	-0.0
4,475,458	-		GFF4482	0.64	+0.7
4,475,497	+		GFF4482	0.70	+0.8
4,475,497	+		GFF4482	0.70	-0.1
4,475,505	-		GFF4482	0.72	+0.8
4,475,505	-		GFF4482	0.72	+0.8
4,475,505	-		GFF4482	0.72	+1.7
4,475,520	+		GFF4482	0.74	+1.1
4,475,536	-		GFF4482	0.77	+1.6
4,475,543	-		GFF4482	0.78	+1.7
4,475,543	-		GFF4482	0.78	-0.5
4,475,545	+		GFF4482	0.78	-0.5
4,475,554	+		GFF4482	0.80	+0.8
4,475,554	+		GFF4482	0.80	-1.3
4,475,554	+		GFF4482	0.80	-0.9
4,475,554	+		GFF4482	0.80	+0.5
4,475,554	+		GFF4482	0.80	-0.2
4,475,554	+		GFF4482	0.80	-0.6
4,475,554	+		GFF4482	0.80	+0.5
4,475,554	+		GFF4482	0.80	+1.5
4,475,554	+		GFF4482	0.80	+0.5
4,475,562	-		GFF4482	0.81	+0.1
4,475,562	-		GFF4482	0.81	+0.6
4,475,562	-		GFF4482	0.81	-1.0
4,475,562	-		GFF4482	0.81	-0.5
4,475,562	-		GFF4482	0.81	-0.8
4,475,562	-		GFF4482	0.81	+0.7
4,475,562	-		GFF4482	0.81	-0.5
4,475,562	-		GFF4482	0.81	-1.7
4,475,562	-		GFF4482	0.81	-0.1
4,475,562	-		GFF4482	0.81	+0.1
4,475,562	-		GFF4482	0.81	-2.1
4,475,562	-		GFF4482	0.81	+0.6
4,475,562	-		GFF4482	0.81	-0.6
4,475,573	+		GFF4482	0.83	-0.1
4,475,580	+		GFF4482	0.84	-0.0
4,475,580	+		GFF4482	0.84	+0.4
4,475,580	+		GFF4482	0.84	-1.4
4,475,580	+		GFF4482	0.84	-1.1
4,475,588	-		GFF4482	0.85	-1.5
4,475,588	-		GFF4482	0.85	+0.6
4,475,588	-		GFF4482	0.85	+1.3
4,475,588	-		GFF4482	0.85	+0.4
4,475,588	-		GFF4482	0.85	-0.8
4,475,588	-		GFF4482	0.85	+0.5
4,475,588	-		GFF4482	0.85	+0.5
4,475,588	-		GFF4482	0.85	+1.1
4,475,588	-		GFF4482	0.85	-1.0
4,475,588	-		GFF4482	0.85	+0.9
4,475,614	-		GFF4482	0.89	-0.8
4,475,647	-				-0.4
4,475,684	-				-0.0
4,475,686	-				+0.2
4,475,686	-				-2.2
4,475,686	-				+1.1
4,475,703	-				+1.7
4,475,708	+				-2.4
4,475,708	+				-1.6
4,475,716	+				+1.5
4,475,716	+				-0.2
4,475,716	+				-0.4
4,475,724	-				+1.0
4,475,724	-				+1.2
4,475,724	-				-0.6
4,475,724	-				-0.7
4,475,726	+				+0.3
4,475,734	-				+0.7
4,475,734	-				-0.6
4,475,741	-				-0.7
4,475,781	+				+0.5
4,475,789	-				+1.1
4,475,789	-				-1.5
4,475,792	+				-1.8
4,475,800	-				+0.2
4,475,820	+				+0.1
4,475,820	+				-1.2
4,475,831	+				-0.5
4,475,831	+				+0.9
4,475,831	+				-0.4
4,475,843	-				+1.0
4,475,925	+		GFF4483	0.11	+0.6
4,475,961	+		GFF4483	0.14	+0.2
4,476,006	-		GFF4483	0.18	+0.6
4,476,030	-		GFF4483	0.20	+0.9
4,476,046	+		GFF4483	0.21	-0.2
4,476,046	+		GFF4483	0.21	-0.7
4,476,046	+		GFF4483	0.21	-0.8
4,476,046	+		GFF4483	0.21	-0.3
4,476,054	-		GFF4483	0.21	-0.0
4,476,054	-		GFF4483	0.21	+0.3
4,476,054	-		GFF4483	0.21	+0.4
4,476,057	+		GFF4483	0.22	+1.3
4,476,065	-		GFF4483	0.22	+0.3
4,476,095	+		GFF4483	0.25	-0.3
4,476,103	-		GFF4483	0.25	-0.5
4,476,136	+		GFF4483	0.28	-0.0
4,476,141	+		GFF4483	0.28	+0.1
4,476,142	-		GFF4483	0.28	+1.1
4,476,144	-		GFF4483	0.29	-0.0
4,476,144	-		GFF4483	0.29	-0.9
4,476,149	-		GFF4483	0.29	-0.2
4,476,167	-		GFF4483	0.30	+1.0
4,476,167	-		GFF4483	0.30	+0.4
4,476,206	-		GFF4483	0.33	+0.7
4,476,206	-		GFF4483	0.33	+1.1
4,476,217	+		GFF4483	0.34	-0.5
4,476,223	+		GFF4483	0.35	-0.1
4,476,223	+		GFF4483	0.35	+1.3
4,476,223	+		GFF4483	0.35	+0.1
4,476,228	+		GFF4483	0.35	-0.0
4,476,230	+		GFF4483	0.35	+0.1
4,476,230	+		GFF4483	0.35	+0.1
4,476,230	+		GFF4483	0.35	-2.1
4,476,230	+		GFF4483	0.35	+0.8
4,476,231	-		GFF4483	0.35	+0.3
4,476,236	-		GFF4483	0.36	+1.4
4,476,238	-		GFF4483	0.36	+0.4
4,476,238	-		GFF4483	0.36	+1.5
4,476,238	-		GFF4483	0.36	+0.5
4,476,238	-		GFF4483	0.36	-1.2
4,476,238	-		GFF4483	0.36	+0.7
4,476,257	+		GFF4483	0.37	-0.0
4,476,267	-		GFF4483	0.38	-0.8
4,476,291	+		GFF4483	0.40	+0.3
4,476,291	+		GFF4483	0.40	-0.3
4,476,299	-		GFF4483	0.41	-0.3
4,476,299	-		GFF4483	0.41	-0.2
4,476,299	-		GFF4483	0.41	-0.2
4,476,303	+		GFF4483	0.41	-0.5
4,476,303	+		GFF4483	0.41	-0.7
4,476,303	+		GFF4483	0.41	-0.9
4,476,303	+		GFF4483	0.41	-3.0
4,476,303	+		GFF4483	0.41	+0.5
4,476,303	+		GFF4483	0.41	-0.1
4,476,305	-		GFF4483	0.41	-1.2
4,476,306	-		GFF4483	0.41	+0.6
4,476,311	-		GFF4483	0.42	-0.0
4,476,311	-		GFF4483	0.42	-0.3
4,476,311	-		GFF4483	0.42	+0.7
4,476,311	-		GFF4483	0.42	-0.2
4,476,311	-		GFF4483	0.42	-1.6
4,476,328	-		GFF4483	0.43	+0.2
4,476,364	-		GFF4483	0.46	+0.5
4,476,375	+		GFF4483	0.47	-0.0
4,476,443	-		GFF4483	0.52	-0.5
4,476,459	+		GFF4483	0.53	+1.2
4,476,492	+		GFF4483	0.56	-0.1
4,476,505	-		GFF4483	0.57	-0.8
4,476,517	+		GFF4483	0.58	-0.0
4,476,517	-		GFF4483	0.58	-0.5
4,476,535	+		GFF4483	0.59	+0.4
4,476,535	+		GFF4483	0.59	+0.8
4,476,543	-		GFF4483	0.60	+1.3
4,476,545	+		GFF4483	0.60	-0.1
4,476,550	+		GFF4483	0.61	+0.8
4,476,563	-		GFF4483	0.62	-1.8
4,476,572	+		GFF4483	0.62	-0.5
4,476,578	+		GFF4483	0.63	+0.1
4,476,586	-		GFF4483	0.63	+1.6
4,476,611	+		GFF4483	0.65	+0.1
4,476,642	+		GFF4483	0.68	-1.0
4,476,646	+		GFF4483	0.68	-0.1