Strain Fitness in Sphingobium sp. HT1-2 around GFF4426

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,421,553	+		GFF4425	0.17	-1.5
4,421,558	+		GFF4425	0.17	-0.6
4,421,561	-		GFF4425	0.18	-1.6
4,421,561	-		GFF4425	0.18	-1.5
4,421,563	+		GFF4425	0.18	+0.4
4,421,563	+		GFF4425	0.18	-0.4
4,421,563	+		GFF4425	0.18	+0.1
4,421,563	+		GFF4425	0.18	-2.0
4,421,563	+		GFF4425	0.18	+0.2
4,421,563	+		GFF4425	0.18	+0.5
4,421,563	+		GFF4425	0.18	+0.2
4,421,566	-		GFF4425	0.18	-0.6
4,421,573	-		GFF4425	0.19	-0.6
4,421,584	+		GFF4425	0.20	-2.9
4,421,584	+		GFF4425	0.20	-0.2
4,421,611	+		GFF4425	0.23	-0.7
4,421,611	+		GFF4425	0.23	-1.3
4,421,623	+		GFF4425	0.25	-1.6
4,421,628	+		GFF4425	0.25	-0.1
4,421,633	-		GFF4425	0.26	+0.5
4,421,643	+		GFF4425	0.27	-1.9
4,421,653	-		GFF4425	0.28	+0.7
4,421,653	-		GFF4425	0.28	+0.8
4,421,693	+		GFF4425	0.32	-0.9
4,421,701	+		GFF4425	0.33	+0.4
4,421,701	+		GFF4425	0.33	-0.6
4,421,701	+		GFF4425	0.33	-0.9
4,421,701	+		GFF4425	0.33	+0.6
4,421,701	+		GFF4425	0.33	-0.6
4,421,701	+		GFF4425	0.33	-0.3
4,421,701	+		GFF4425	0.33	-1.5
4,421,701	+		GFF4425	0.33	-0.3
4,421,701	+		GFF4425	0.33	-0.1
4,421,701	+		GFF4425	0.33	-1.5
4,421,701	+		GFF4425	0.33	-0.4
4,421,701	+		GFF4425	0.33	-0.6
4,421,701	+		GFF4425	0.33	-0.1
4,421,701	+		GFF4425	0.33	+0.6
4,421,701	+		GFF4425	0.33	-0.2
4,421,701	+		GFF4425	0.33	+1.0
4,421,701	+		GFF4425	0.33	-1.5
4,421,701	+		GFF4425	0.33	+0.0
4,421,701	+		GFF4425	0.33	+0.5
4,421,701	+		GFF4425	0.33	+0.4
4,421,701	+		GFF4425	0.33	+1.0
4,421,701	+		GFF4425	0.33	-0.1
4,421,701	+		GFF4425	0.33	-0.5
4,421,701	+		GFF4425	0.33	-0.0
4,421,708	+		GFF4425	0.34	+1.0
4,421,708	+		GFF4425	0.34	+0.8
4,421,709	-		GFF4425	0.34	+0.5
4,421,709	-		GFF4425	0.34	+0.5
4,421,709	-		GFF4425	0.34	-0.8
4,421,709	-		GFF4425	0.34	-1.7
4,421,709	-		GFF4425	0.34	+0.0
4,421,709	-		GFF4425	0.34	-0.5
4,421,709	-		GFF4425	0.34	-1.2
4,421,709	-		GFF4425	0.34	-1.6
4,421,709	-		GFF4425	0.34	-0.5
4,421,709	-		GFF4425	0.34	-0.6
4,421,709	-		GFF4425	0.34	+0.0
4,421,709	-		GFF4425	0.34	+0.1
4,421,709	-		GFF4425	0.34	-0.2
4,421,709	-		GFF4425	0.34	-2.0
4,421,709	-		GFF4425	0.34	-0.1
4,421,709	-		GFF4425	0.34	-0.2
4,421,709	-		GFF4425	0.34	-0.3
4,421,709	-		GFF4425	0.34	-1.6
4,421,709	-		GFF4425	0.34	+0.2
4,421,713	+		GFF4425	0.35	-0.9
4,421,721	-		GFF4425	0.35	+0.8
4,421,721	-		GFF4425	0.35	-0.6
4,421,721	-		GFF4425	0.35	-0.6
4,421,724	+		GFF4425	0.36	-0.6
4,421,744	-		GFF4425	0.38	-2.1
4,421,749	-		GFF4425	0.39	+0.3
4,421,754	-		GFF4425	0.39	-0.6
4,421,765	+		GFF4425	0.40	-0.8
4,421,775	+		GFF4425	0.41	-0.3
4,421,793	-		GFF4425	0.43	+1.6
4,421,830	-		GFF4425	0.47	+0.7
4,421,830	-		GFF4425	0.47	+1.2
4,421,830	-		GFF4425	0.47	-0.9
4,421,834	+		GFF4425	0.48	-0.1
4,421,837	-		GFF4425	0.48	+0.4
4,421,847	-		GFF4425	0.49	+0.5
4,421,894	+		GFF4425	0.55	-0.6
4,421,894	+		GFF4425	0.55	+0.2
4,421,894	+		GFF4425	0.55	-0.4
4,421,894	+		GFF4425	0.55	-2.5
4,421,911	+		GFF4425	0.56	-0.3
4,421,916	+		GFF4425	0.57	+0.3
4,421,919	-		GFF4425	0.57	+0.6
4,421,923	+		GFF4425	0.58	-0.5
4,421,923	+		GFF4425	0.58	-1.0
4,421,923	+		GFF4425	0.58	+1.2
4,421,923	+		GFF4425	0.58	+0.7
4,421,924	-		GFF4425	0.58	+0.1
4,421,931	-		GFF4425	0.59	+0.2
4,421,931	-		GFF4425	0.59	-0.9
4,421,931	-		GFF4425	0.59	+0.3
4,421,931	-		GFF4425	0.59	+1.1
4,421,935	+		GFF4425	0.59	-0.2
4,421,935	+		GFF4425	0.59	-0.4
4,421,935	+		GFF4425	0.59	+0.6
4,421,943	-		GFF4425	0.60	+0.9
4,421,943	-		GFF4425	0.60	-0.1
4,421,957	+		GFF4425	0.61	-1.1
4,421,957	+		GFF4425	0.61	-0.8
4,421,957	+		GFF4425	0.61	+0.5
4,421,957	+		GFF4425	0.61	-1.9
4,421,957	+		GFF4425	0.61	+0.8
4,421,965	-		GFF4425	0.62	-1.1
4,421,965	-		GFF4425	0.62	+0.8
4,421,965	-		GFF4425	0.62	-0.4
4,421,965	-		GFF4425	0.62	-2.1
4,421,972	+		GFF4425	0.63	+0.4
4,421,973	+		GFF4425	0.63	+0.8
4,421,973	+		GFF4425	0.63	-0.6
4,421,980	+		GFF4425	0.64	-2.7
4,421,980	-		GFF4425	0.64	-0.2
4,421,980	-		GFF4425	0.64	+0.3
4,421,999	-		GFF4425	0.66	+0.7
4,422,033	-		GFF4425	0.70	-1.8
4,422,055	+		GFF4425	0.72	+1.4
4,422,062	-		GFF4425	0.73	+0.8
4,422,069	+		GFF4425	0.74	-0.4
4,422,069	+		GFF4425	0.74	-0.0
4,422,069	+		GFF4425	0.74	+0.4
4,422,069	+		GFF4425	0.74	-0.0
4,422,077	-		GFF4425	0.75	-1.2
4,422,077	-		GFF4425	0.75	-0.9
4,422,103	+		GFF4425	0.78	-1.0
4,422,121	-		GFF4425	0.80	-2.5
4,422,127	-		GFF4425	0.80	+0.5
4,422,129	+		GFF4425	0.80	+1.8
4,422,129	+		GFF4425	0.80	-2.2
4,422,129	+		GFF4425	0.80	-0.9
4,422,129	+		GFF4425	0.80	-0.9
4,422,129	+		GFF4425	0.80	-1.1
4,422,137	-		GFF4425	0.81	-0.4
4,422,144	+		GFF4425	0.82	-0.6
4,422,144	+		GFF4425	0.82	-0.2
4,422,165	+		GFF4425	0.84	-1.2
4,422,173	-		GFF4425	0.85	-0.3
4,422,179	-		GFF4425	0.86	-1.0
4,422,180	+		GFF4425	0.86	+0.1
4,422,180	-		GFF4425	0.86	+1.3
4,422,187	-		GFF4425	0.87	+0.1
4,422,198	+		GFF4425	0.88	+0.4
4,422,198	+		GFF4425	0.88	-0.0
4,422,198	+		GFF4425	0.88	+0.1
4,422,213	-		GFF4425	0.90	+2.2
4,422,216	+				-2.0
4,422,247	+				+0.3
4,422,247	+				-0.3
4,422,254	-				-0.1
4,422,277	-				-0.6
4,422,321	-				-0.2
4,422,348	+				-1.8
4,422,348	+				-1.0
4,422,356	-				-0.6
4,422,356	-				+0.3
4,422,356	-				-2.0
4,422,358	+				-1.8
4,422,358	-				-0.5
4,422,384	+				-0.6
4,422,385	+				-0.5
4,422,394	+				-0.8
4,422,403	+				+0.9
4,422,403	-				+0.9
4,422,403	-				-0.8
4,422,413	+				-1.4
4,422,416	-				-1.5
4,422,418	+				-1.3
4,422,440	-				-0.6
4,422,449	-				-0.7
4,422,450	-				+0.2
4,422,451	+				-0.4
4,422,470	+				-0.9
4,422,509	+				-0.5
4,422,509	+				+0.2
4,422,509	+				+0.2
4,422,511	+				-2.4
4,422,517	-				-0.7
4,422,517	-				-1.8
4,422,517	-				+0.0
4,422,517	-				-0.7
4,422,526	-				-1.1
4,422,533	+				+0.8
4,422,548	+				-0.8
4,422,551	-				-1.9
4,422,556	-				-0.7
4,422,562	-		GFF4426	0.12	-1.4
4,422,562	-		GFF4426	0.12	-0.2
4,422,587	+		GFF4426	0.26	-0.2
4,422,587	+		GFF4426	0.26	-0.3
4,422,587	+		GFF4426	0.26	+0.2
4,422,595	-		GFF4426	0.31	+0.0
4,422,595	-		GFF4426	0.31	+0.9
4,422,599	+		GFF4426	0.33	+0.7
4,422,599	+		GFF4426	0.33	-1.0
4,422,604	+		GFF4426	0.36	-0.1
4,422,609	+		GFF4426	0.39	+0.2
4,422,609	+		GFF4426	0.39	-2.9
4,422,609	+		GFF4426	0.39	+1.3
4,422,609	+		GFF4426	0.39	+0.1
4,422,609	+		GFF4426	0.39	+1.1
4,422,609	+		GFF4426	0.39	-0.8
4,422,609	+		GFF4426	0.39	-0.5
4,422,617	-		GFF4426	0.44	+1.0
4,422,617	-		GFF4426	0.44	-1.5
4,422,617	-		GFF4426	0.44	+0.3
4,422,617	-		GFF4426	0.44	+0.5
4,422,617	-		GFF4426	0.44	-2.0
4,422,617	-		GFF4426	0.44	-1.5
4,422,617	-		GFF4426	0.44	-0.2
4,422,617	-		GFF4426	0.44	-0.2
4,422,619	+		GFF4426	0.45	+0.2
4,422,619	+		GFF4426	0.45	-0.8
4,422,619	+		GFF4426	0.45	+0.1
4,422,619	+		GFF4426	0.45	-1.0
4,422,619	+		GFF4426	0.45	-0.1
4,422,619	+		GFF4426	0.45	+0.9
4,422,621	+		GFF4426	0.46	+0.5
4,422,621	+		GFF4426	0.46	-0.5
4,422,621	+		GFF4426	0.46	+1.2
4,422,621	+		GFF4426	0.46	+0.2
4,422,621	+		GFF4426	0.46	-0.1
4,422,621	+		GFF4426	0.46	-1.1
4,422,621	+		GFF4426	0.46	-2.3
4,422,621	+		GFF4426	0.46	+0.4
4,422,621	+		GFF4426	0.46	+1.7
4,422,621	+		GFF4426	0.46	-1.0
4,422,621	+		GFF4426	0.46	-1.2
4,422,627	-		GFF4426	0.49	+0.7
4,422,627	-		GFF4426	0.49	-2.5
4,422,627	-		GFF4426	0.49	-0.1
4,422,627	-		GFF4426	0.49	+0.2
4,422,629	-		GFF4426	0.51	-0.9
4,422,629	-		GFF4426	0.51	+0.6
4,422,629	-		GFF4426	0.51	+0.1
4,422,629	-		GFF4426	0.51	-1.1
4,422,629	-		GFF4426	0.51	+0.4
4,422,629	-		GFF4426	0.51	-2.3
4,422,629	-		GFF4426	0.51	+0.2
4,422,629	-		GFF4426	0.51	-0.6
4,422,629	-		GFF4426	0.51	-0.3
4,422,629	-		GFF4426	0.51	+0.5
4,422,629	-		GFF4426	0.51	+0.5
4,422,629	-		GFF4426	0.51	+1.5
4,422,661	-		GFF4426	0.69	+0.1
4,422,662	-		GFF4426	0.70	-0.8
4,422,662	-		GFF4426	0.70	+0.9
4,422,662	-		GFF4426	0.70	+0.6
4,422,665	+		GFF4426	0.71	-0.3
4,422,698	+				+0.4
4,422,706	-				+0.5
4,422,707	-				+0.7
4,422,722	+				-0.5
4,422,725	+				-0.4
4,422,725	+				+0.1
4,422,730	-				-0.7
4,422,730	-				-1.5
4,422,730	-				-0.3
4,422,730	-				-0.8
4,422,730	-				-0.5
4,422,733	-				-0.7
4,422,738	-				-1.2
4,422,742	-				-0.1
4,422,799	+		GFF4427	0.11	-0.1
4,422,824	+		GFF4427	0.15	-0.3
4,422,836	-		GFF4427	0.16	-0.7
4,422,836	-		GFF4427	0.16	+0.2
4,422,855	+		GFF4427	0.19	+0.6
4,422,855	+		GFF4427	0.19	-0.1
4,422,863	-		GFF4427	0.20	-1.3
4,422,863	-		GFF4427	0.20	-1.9
4,422,863	-		GFF4427	0.20	-1.4
4,422,873	-		GFF4427	0.21	+0.1
4,422,877	+		GFF4427	0.22	-0.4
4,422,883	-		GFF4427	0.23	-0.6
4,422,899	+		GFF4427	0.25	-1.3
4,422,909	+		GFF4427	0.26	+0.4
4,422,909	-		GFF4427	0.26	-0.3
4,422,919	-		GFF4427	0.28	-2.0
4,422,919	-		GFF4427	0.28	+0.6
4,422,921	+		GFF4427	0.28	+0.1
4,422,936	+		GFF4427	0.30	+1.0
4,422,936	+		GFF4427	0.30	-0.4
4,422,943	+		GFF4427	0.31	-1.3
4,422,943	+		GFF4427	0.31	-3.1
4,422,944	-		GFF4427	0.31	-0.4
4,422,948	+		GFF4427	0.32	-1.1
4,422,951	-		GFF4427	0.32	-1.1
4,422,951	-		GFF4427	0.32	-2.3
4,422,956	-		GFF4427	0.33	-0.9
4,422,966	-		GFF4427	0.34	-2.1
4,422,977	+		GFF4427	0.36	-1.9
4,422,980	+		GFF4427	0.36	-0.6
4,422,987	+		GFF4427	0.37	+0.2
4,422,987	+		GFF4427	0.37	-0.1
4,422,987	+		GFF4427	0.37	-1.0
4,422,995	-		GFF4427	0.38	-1.2
4,422,995	-		GFF4427	0.38	+0.0
4,422,995	-		GFF4427	0.38	-0.1
4,422,995	-		GFF4427	0.38	-1.1
4,423,000	-		GFF4427	0.39	-0.0
4,423,022	+		GFF4427	0.42	-0.3
4,423,023	+		GFF4427	0.42	+0.4
4,423,023	+		GFF4427	0.42	+1.4
4,423,023	+		GFF4427	0.42	-0.5
4,423,031	-		GFF4427	0.43	-0.8
4,423,031	-		GFF4427	0.43	-2.1
4,423,031	-		GFF4427	0.43	-1.9
4,423,031	-		GFF4427	0.43	+0.2
4,423,031	-		GFF4427	0.43	-0.7
4,423,055	+		GFF4427	0.46	-2.3
4,423,058	-		GFF4427	0.47	-0.4
4,423,060	+		GFF4427	0.47	+0.5
4,423,060	+		GFF4427	0.47	-0.3
4,423,063	-		GFF4427	0.47	+0.2
4,423,065	+		GFF4427	0.48	-1.8
4,423,065	+		GFF4427	0.48	-1.7
4,423,065	+		GFF4427	0.48	-0.8
4,423,068	-		GFF4427	0.48	+0.5
4,423,068	-		GFF4427	0.48	+1.3
4,423,068	-		GFF4427	0.48	+0.7
4,423,073	-		GFF4427	0.49	+0.6
4,423,073	-		GFF4427	0.49	+1.0
4,423,073	-		GFF4427	0.49	+1.4
4,423,078	-		GFF4427	0.50	-0.2
4,423,085	+		GFF4427	0.50	-0.1
4,423,085	-		GFF4427	0.50	+0.1
4,423,091	-		GFF4427	0.51	-0.2
4,423,091	-		GFF4427	0.51	-1.6
4,423,107	-		GFF4427	0.53	-2.1
4,423,127	+		GFF4427	0.56	-2.5
4,423,127	+		GFF4427	0.56	+0.4
4,423,135	-		GFF4427	0.57	-0.4
4,423,138	-		GFF4427	0.58	+1.7
4,423,140	-		GFF4427	0.58	-1.1
4,423,141	+		GFF4427	0.58	-1.5
4,423,141	+		GFF4427	0.58	-1.3
4,423,148	-		GFF4427	0.59	-1.2
4,423,149	-		GFF4427	0.59	-1.0
4,423,165	-		GFF4427	0.61	-0.5
4,423,179	+		GFF4427	0.63	-0.6
4,423,179	+		GFF4427	0.63	-3.2
4,423,184	+		GFF4427	0.64	-0.5
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4,423,198	+		GFF4427	0.66	-0.6
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4,423,289	+		GFF4427	0.78	-0.8
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4,423,299	-		GFF4427	0.80	-1.0
4,423,326	-		GFF4427	0.84	-2.1
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4,423,343	-		GFF4427	0.86	+0.2
4,423,364	-		GFF4427	0.89	+0.0
4,423,366	+		GFF4427	0.89	+0.4
4,423,381	+				-1.9
4,423,381	+				-0.5
4,423,381	+				-0.8
4,423,389	-				-0.4
4,423,389	-				-0.5
4,423,389	-				+0.7
4,423,420	+				+0.1
4,423,428	-				+1.7
4,423,428	-				+0.7
4,423,450	+				-1.9
4,423,450	+				-1.1
4,423,450	+				+0.1
4,423,458	-				+0.3
4,423,458	-				-0.2
4,423,458	-				+0.7
4,423,458	-				+0.6
4,423,458	-				-2.1
4,423,467	+				-0.1
4,423,467	+				+0.3
4,423,470	-				-1.9
4,423,470	-				-0.3
4,423,470	-				-1.1
4,423,470	-				-0.2
4,423,472	+				-0.6
4,423,510	+		GFF4428	0.24	+0.4
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4,423,650	+		GFF4428	0.77	-1.9
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4,423,654	+		GFF4428	0.79	-0.8
4,423,654	+		GFF4428	0.79	-0.1
4,423,662	-		GFF4428	0.82	-0.9
4,423,665	+		GFF4428	0.83	-0.4
4,423,697	+				+0.3
4,423,705	-				-1.4
4,423,707	+				-1.6