Strain Fitness in Sphingobium sp. HT1-2 around GFF4424

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,419,220	-		GFF4422	0.78	+0.2
4,419,226	-		GFF4422	0.78	+0.1
4,419,230	+		GFF4422	0.78	+0.8
4,419,238	-		GFF4422	0.79	-2.7
4,419,260	-		GFF4422	0.80	+0.1
4,419,261	+		GFF4422	0.80	+1.1
4,419,261	+		GFF4422	0.80	-0.2
4,419,261	+		GFF4422	0.80	-0.0
4,419,261	+		GFF4422	0.80	-0.5
4,419,269	-		GFF4422	0.81	-1.1
4,419,269	-		GFF4422	0.81	+0.5
4,419,279	-		GFF4422	0.81	-2.7
4,419,286	+		GFF4422	0.81	-0.2
4,419,286	+		GFF4422	0.81	-0.1
4,419,296	-		GFF4422	0.82	-0.4
4,419,341	-		GFF4422	0.84	-0.7
4,419,342	+		GFF4422	0.85	-0.6
4,419,349	-		GFF4422	0.85	-1.1
4,419,350	-		GFF4422	0.85	-3.3
4,419,350	-		GFF4422	0.85	-0.5
4,419,350	-		GFF4422	0.85	+0.0
4,419,350	-		GFF4422	0.85	+0.7
4,419,352	+		GFF4422	0.85	-1.8
4,419,352	+		GFF4422	0.85	-0.9
4,419,359	+		GFF4422	0.85	-0.3
4,419,359	+		GFF4422	0.85	-1.5
4,419,367	+		GFF4422	0.86	+0.7
4,419,376	+		GFF4422	0.86	-0.1
4,419,381	+		GFF4422	0.87	-0.1
4,419,384	+		GFF4422	0.87	-0.4
4,419,384	+		GFF4422	0.87	-0.1
4,419,384	+		GFF4422	0.87	+0.4
4,419,384	-		GFF4422	0.87	+0.4
4,419,391	+		GFF4422	0.87	-0.9
4,419,392	-		GFF4422	0.87	-1.5
4,419,392	-		GFF4422	0.87	+0.4
4,419,399	-		GFF4422	0.88	+0.8
4,419,406	-		GFF4422	0.88	-2.1
4,419,409	-		GFF4422	0.88	-0.7
4,419,435	-		GFF4422	0.90	-1.2
4,419,469	-				-0.2
4,419,494	-				-0.5
4,419,494	-				-1.9
4,419,507	+				-0.7
4,419,512	+				-0.8
4,419,512	+				+0.2
4,419,512	+				+0.2
4,419,513	+				+0.1
4,419,515	-				-2.0
4,419,517	+				+0.9
4,419,520	-				-0.9
4,419,520	-				+0.7
4,419,520	-				-0.8
4,419,520	-				-1.0
4,419,529	-				+1.0
4,419,535	-				+0.1
4,419,535	-				-2.1
4,419,554	-				-1.5
4,419,567	+				-1.2
4,419,567	+				-0.3
4,419,573	-				+0.5
4,419,575	+				+0.5
4,419,575	-				+0.8
4,419,575	-				+0.2
4,419,575	-				-0.8
4,419,586	+				+1.1
4,419,586	+				+0.8
4,419,593	+				-0.6
4,419,593	+				+0.1
4,419,594	-				-0.1
4,419,599	-				-0.6
4,419,610	+				+0.2
4,419,615	+				-0.4
4,419,615	+				+0.4
4,419,615	+				+0.5
4,419,615	+				-0.1
4,419,615	+				-1.7
4,419,615	+				+0.4
4,419,615	+				-0.9
4,419,621	+				-0.9
4,419,622	+				+0.4
4,419,622	+				+0.2
4,419,623	-				-0.5
4,419,623	-				-0.9
4,419,623	-				+0.2
4,419,623	-				+0.5
4,419,623	-				+1.1
4,419,623	-				+0.0
4,419,623	-				-0.1
4,419,623	-				-1.4
4,419,623	-				-0.2
4,419,623	-				+1.0
4,419,629	-				-2.4
4,419,630	-				+0.1
4,419,630	-				-0.6
4,419,630	-				-1.2
4,419,631	+				-1.9
4,419,635	-				-0.9
4,419,649	-				+0.0
4,419,664	+		GFF4423	0.15	-1.1
4,419,669	+		GFF4423	0.17	-0.7
4,419,682	+		GFF4423	0.22	+0.2
4,419,682	+		GFF4423	0.22	-0.6
4,419,685	-		GFF4423	0.23	+0.4
4,419,690	-		GFF4423	0.25	-0.5
4,419,690	-		GFF4423	0.25	+0.1
4,419,692	+		GFF4423	0.26	-0.2
4,419,707	+		GFF4423	0.31	-0.6
4,419,714	-		GFF4423	0.34	-1.3
4,419,733	-		GFF4423	0.41	-2.1
4,419,735	+		GFF4423	0.42	+0.5
4,419,749	+		GFF4423	0.47	+0.6
4,419,749	+		GFF4423	0.47	-0.8
4,419,749	+		GFF4423	0.47	-0.0
4,419,754	+		GFF4423	0.49	+0.9
4,419,764	+		GFF4423	0.53	-2.0
4,419,764	+		GFF4423	0.53	-0.5
4,419,764	+		GFF4423	0.53	-2.3
4,419,764	+		GFF4423	0.53	+0.5
4,419,772	-		GFF4423	0.56	-0.5
4,419,772	-		GFF4423	0.56	-0.3
4,419,804	+		GFF4423	0.68	+0.5
4,419,821	-		GFF4423	0.75	-0.3
4,419,829	-		GFF4423	0.78	+1.3
4,419,901	-				-0.3
4,419,933	+				-1.6
4,419,933	+				+0.5
4,419,938	+				+0.6
4,419,938	+				-0.4
4,419,938	+				-0.8
4,419,938	+				-0.6
4,419,938	+				+0.4
4,419,938	+				-1.6
4,419,941	-				+0.7
4,419,946	+				+0.2
4,419,946	-				-0.2
4,419,946	-				+0.4
4,419,946	-				+0.2
4,419,946	-				-1.8
4,419,946	-				-0.3
4,419,954	-				-0.4
4,419,962	+				+0.4
4,419,969	+				-0.3
4,419,969	+				-0.3
4,419,972	-				+0.9
4,419,977	-				-1.8
4,419,990	-				+0.1
4,419,990	-				-0.4
4,420,005	+				-0.0
4,420,010	+				-2.0
4,420,010	+				+0.1
4,420,010	+				+0.4
4,420,010	+				-1.2
4,420,012	-				-1.5
4,420,013	-				+0.0
4,420,015	+				-0.3
4,420,015	+				-0.3
4,420,015	+				-0.4
4,420,017	+				+0.6
4,420,017	+				-1.5
4,420,018	-				-1.5
4,420,018	-				+0.4
4,420,023	-				-0.4
4,420,025	-				-0.6
4,420,033	+				-3.1
4,420,058	+				+0.1
4,420,058	+				-0.4
4,420,060	+				-0.6
4,420,066	-				-0.1
4,420,066	-				-0.6
4,420,066	-				-0.0
4,420,076	-				-0.3
4,420,083	-				-0.7
4,420,092	-				-1.0
4,420,094	-				+0.0
4,420,094	-				-0.1
4,420,106	+				-1.0
4,420,106	-				+0.0
4,420,114	-				-0.9
4,420,132	-				-1.6
4,420,140	-				-0.2
4,420,189	+				-0.5
4,420,210	-				-0.9
4,420,214	+				-1.4
4,420,230	+				+1.3
4,420,231	-				-0.4
4,420,250	+				-0.2
4,420,252	+				+0.2
4,420,252	+				-1.8
4,420,252	+				-0.1
4,420,258	-				-1.6
4,420,260	-				-0.1
4,420,262	-				-1.9
4,420,272	-				-1.2
4,420,279	-				-0.6
4,420,289	-				+1.0
4,420,295	-				-1.7
4,420,295	-				-0.6
4,420,299	+				-0.1
4,420,300	-				-0.6
4,420,306	-				+0.0
4,420,378	+		GFF4424	0.16	-2.6
4,420,379	+		GFF4424	0.16	+0.2
4,420,379	+		GFF4424	0.16	+0.1
4,420,379	+		GFF4424	0.16	+1.0
4,420,379	+		GFF4424	0.16	-0.4
4,420,379	+		GFF4424	0.16	-0.7
4,420,379	+		GFF4424	0.16	-1.5
4,420,379	+		GFF4424	0.16	+0.7
4,420,379	+		GFF4424	0.16	-1.3
4,420,379	+		GFF4424	0.16	+0.7
4,420,379	+		GFF4424	0.16	+0.2
4,420,379	+		GFF4424	0.16	+0.5
4,420,379	+		GFF4424	0.16	-1.6
4,420,379	+		GFF4424	0.16	-2.8
4,420,379	+		GFF4424	0.16	+0.3
4,420,379	+		GFF4424	0.16	+1.0
4,420,379	+		GFF4424	0.16	-3.0
4,420,379	+		GFF4424	0.16	+0.9
4,420,387	-		GFF4424	0.17	-0.5
4,420,387	-		GFF4424	0.17	-0.1
4,420,387	-		GFF4424	0.17	-0.1
4,420,387	-		GFF4424	0.17	-0.6
4,420,387	-		GFF4424	0.17	+0.0
4,420,387	-		GFF4424	0.17	-1.4
4,420,387	-		GFF4424	0.17	-0.2
4,420,387	-		GFF4424	0.17	-0.1
4,420,387	-		GFF4424	0.17	-0.1
4,420,387	-		GFF4424	0.17	-0.8
4,420,387	-		GFF4424	0.17	-0.6
4,420,387	-		GFF4424	0.17	-0.6
4,420,387	-		GFF4424	0.17	+1.1
4,420,397	-		GFF4424	0.18	+0.7
4,420,419	-		GFF4424	0.19	-0.5
4,420,419	-		GFF4424	0.19	+0.6
4,420,437	+		GFF4424	0.21	-0.5
4,420,437	+		GFF4424	0.21	+0.5
4,420,445	-		GFF4424	0.22	-1.1
4,420,460	+		GFF4424	0.23	+0.1
4,420,462	+		GFF4424	0.23	+1.1
4,420,462	+		GFF4424	0.23	+0.6
4,420,474	-		GFF4424	0.24	-0.3
4,420,481	+		GFF4424	0.25	+0.4
4,420,481	+		GFF4424	0.25	+0.4
4,420,481	+		GFF4424	0.25	-1.2
4,420,489	-		GFF4424	0.26	-0.6
4,420,489	-		GFF4424	0.26	-0.5
4,420,490	-		GFF4424	0.26	+0.6
4,420,494	-		GFF4424	0.26	-1.8
4,420,508	+		GFF4424	0.27	+0.4
4,420,508	+		GFF4424	0.27	-0.6
4,420,513	+		GFF4424	0.28	-0.6
4,420,529	+		GFF4424	0.29	+0.6
4,420,537	-		GFF4424	0.30	+0.4
4,420,539	+		GFF4424	0.30	-1.0
4,420,540	+		GFF4424	0.30	-0.2
4,420,540	+		GFF4424	0.30	-0.9
4,420,540	+		GFF4424	0.30	-0.5
4,420,548	-		GFF4424	0.31	+1.2
4,420,550	+		GFF4424	0.31	+0.5
4,420,558	-		GFF4424	0.32	+1.0
4,420,558	-		GFF4424	0.32	-0.3
4,420,572	-		GFF4424	0.33	+0.3
4,420,587	+		GFF4424	0.34	+0.4
4,420,587	+		GFF4424	0.34	+0.1
4,420,587	+		GFF4424	0.34	-0.8
4,420,595	-		GFF4424	0.35	+0.7
4,420,597	+		GFF4424	0.35	-1.2
4,420,607	+		GFF4424	0.36	+0.6
4,420,607	+		GFF4424	0.36	-2.4
4,420,607	+		GFF4424	0.36	-2.7
4,420,610	-		GFF4424	0.36	-0.4
4,420,625	+		GFF4424	0.38	-2.6
4,420,625	+		GFF4424	0.38	-0.8
4,420,625	+		GFF4424	0.38	-0.4
4,420,625	+		GFF4424	0.38	-1.6
4,420,625	+		GFF4424	0.38	-0.4
4,420,625	+		GFF4424	0.38	+0.6
4,420,633	-		GFF4424	0.38	-1.2
4,420,633	-		GFF4424	0.38	+1.4
4,420,633	-		GFF4424	0.38	+1.3
4,420,633	-		GFF4424	0.38	-0.3
4,420,633	-		GFF4424	0.38	-0.1
4,420,633	-		GFF4424	0.38	-0.8
4,420,633	-		GFF4424	0.38	-2.1
4,420,633	-		GFF4424	0.38	-0.8
4,420,633	-		GFF4424	0.38	-1.4
4,420,635	+		GFF4424	0.38	-0.2
4,420,635	+		GFF4424	0.38	+0.1
4,420,635	+		GFF4424	0.38	-0.6
4,420,635	+		GFF4424	0.38	+0.4
4,420,635	+		GFF4424	0.38	-0.2
4,420,635	+		GFF4424	0.38	-1.6
4,420,635	+		GFF4424	0.38	-0.5
4,420,643	-		GFF4424	0.39	+1.2
4,420,643	-		GFF4424	0.39	-0.4
4,420,643	-		GFF4424	0.39	-0.4
4,420,643	-		GFF4424	0.39	-0.7
4,420,643	-		GFF4424	0.39	+1.1
4,420,643	-		GFF4424	0.39	-0.7
4,420,643	-		GFF4424	0.39	-0.1
4,420,643	-		GFF4424	0.39	+0.4
4,420,646	+		GFF4424	0.39	+0.8
4,420,646	+		GFF4424	0.39	+1.6
4,420,646	+		GFF4424	0.39	+0.7
4,420,646	+		GFF4424	0.39	-0.8
4,420,651	+		GFF4424	0.40	-0.6
4,420,651	+		GFF4424	0.40	-0.5
4,420,654	-		GFF4424	0.40	-0.2
4,420,654	-		GFF4424	0.40	-0.7
4,420,654	-		GFF4424	0.40	-0.2
4,420,654	-		GFF4424	0.40	-0.5
4,420,659	-		GFF4424	0.41	-2.0
4,420,659	-		GFF4424	0.41	-2.0
4,420,701	-		GFF4424	0.44	-0.6
4,420,706	+		GFF4424	0.45	-0.8
4,420,710	+		GFF4424	0.45	-0.7
4,420,714	+		GFF4424	0.45	-0.3
4,420,722	-		GFF4424	0.46	-0.6
4,420,722	-		GFF4424	0.46	+0.4
4,420,722	-		GFF4424	0.46	-1.1
4,420,734	-		GFF4424	0.47	-1.1
4,420,738	+		GFF4424	0.47	+1.2
4,420,739	+		GFF4424	0.48	+1.0
4,420,743	+		GFF4424	0.48	-0.1
4,420,751	-		GFF4424	0.49	-1.4
4,420,822	-		GFF4424	0.55	-0.6
4,420,828	+		GFF4424	0.55	-0.3
4,420,833	+		GFF4424	0.56	-2.0
4,420,835	-		GFF4424	0.56	-0.6
4,420,841	-		GFF4424	0.57	+0.7
4,420,875	+		GFF4424	0.60	-1.6
4,420,896	+		GFF4424	0.61	-1.2
4,420,905	-		GFF4424	0.62	+0.1
4,420,910	-		GFF4424	0.63	-0.6
4,420,920	-		GFF4424	0.64	-1.6
4,420,924	-		GFF4424	0.64	-0.9
4,420,956	-		GFF4424	0.67	-0.1
4,420,957	+		GFF4424	0.67	-0.6
4,420,975	-		GFF4424	0.68	-0.9
4,420,984	+		GFF4424	0.69	+0.4
4,420,992	-		GFF4424	0.70	+0.4
4,420,994	-		GFF4424	0.70	-0.3
4,421,012	+		GFF4424	0.72	+0.6
4,421,020	-		GFF4424	0.72	+0.6
4,421,049	+		GFF4424	0.75	-1.2
4,421,082	+		GFF4424	0.78	-0.6
4,421,086	+		GFF4424	0.78	-1.0
4,421,087	+		GFF4424	0.78	-0.2
4,421,088	+		GFF4424	0.78	-1.7
4,421,095	+		GFF4424	0.79	-1.3
4,421,104	-		GFF4424	0.80	-0.9
4,421,117	-		GFF4424	0.81	-0.4
4,421,119	+		GFF4424	0.81	+0.4
4,421,129	+		GFF4424	0.82	+0.9
4,421,129	+		GFF4424	0.82	+0.5
4,421,129	+		GFF4424	0.82	+0.4
4,421,129	+		GFF4424	0.82	+0.5
4,421,129	+		GFF4424	0.82	-0.2
4,421,134	+		GFF4424	0.82	-0.9
4,421,134	+		GFF4424	0.82	+0.9
4,421,134	+		GFF4424	0.82	+0.4
4,421,137	-		GFF4424	0.83	-0.3
4,421,137	-		GFF4424	0.83	+0.8
4,421,137	-		GFF4424	0.83	-0.8
4,421,137	-		GFF4424	0.83	-0.5
4,421,142	-		GFF4424	0.83	+0.5
4,421,142	-		GFF4424	0.83	+0.3
4,421,150	+		GFF4424	0.84	+0.0
4,421,150	+		GFF4424	0.84	-1.4
4,421,152	-		GFF4424	0.84	-0.5
4,421,155	+		GFF4424	0.84	-0.1
4,421,158	-		GFF4424	0.84	+0.2
4,421,168	-		GFF4424	0.85	-0.3
4,421,168	-		GFF4424	0.85	+1.2
4,421,171	+		GFF4424	0.86	-0.9
4,421,179	-		GFF4424	0.86	-1.3
4,421,181	+		GFF4424	0.86	-2.0
4,421,189	-		GFF4424	0.87	-0.9
4,421,189	-		GFF4424	0.87	+0.8
4,421,191	-		GFF4424	0.87	+1.8
4,421,206	+		GFF4424	0.89	-2.2
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4,421,214	-		GFF4424	0.89	-1.1
4,421,224	-				-1.1
4,421,273	-				-0.6
4,421,335	-				-2.1
4,421,337	+				+0.1
4,421,361	+				-0.9
4,421,369	-				+0.3
4,421,369	-				+0.5
4,421,369	-				-1.8
4,421,401	+				+0.1
4,421,415	-				-0.3
4,421,435	-				+0.2
4,421,435	-				-2.3
4,421,437	+				-0.9
4,421,437	+				-1.6
4,421,437	+				+0.6
4,421,442	+				-0.3
4,421,453	+				-1.4
4,421,455	-				-0.3
4,421,466	+				-0.3
4,421,466	+				+1.3
4,421,471	+				+0.4
4,421,471	+				+0.7
4,421,471	+				-1.1
4,421,471	+				-1.1
4,421,471	+				+0.9
4,421,471	+				-0.2
4,421,471	+				-2.1
4,421,474	-				-1.5
4,421,479	-				+0.5
4,421,479	-				+0.7
4,421,479	-				-2.3
4,421,479	-				-0.7
4,421,479	-				-1.5
4,421,479	-				+0.3
4,421,479	-				-0.8
4,421,479	-				-1.5
4,421,479	-				-0.3
4,421,479	-				+0.1
4,421,479	-				-1.3
4,421,479	-				+0.3
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4,421,491	-		GFF4425	0.10	-0.5
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4,421,523	-		GFF4425	0.14	-1.0
4,421,525	-		GFF4425	0.14	+1.0
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4,421,528	+		GFF4425	0.14	-1.5
4,421,528	+		GFF4425	0.14	-0.1
4,421,528	+		GFF4425	0.14	+1.0
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4,421,533	+		GFF4425	0.15	+0.1
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4,421,536	-		GFF4425	0.15	+0.1
4,421,536	-		GFF4425	0.15	+0.3
4,421,536	-		GFF4425	0.15	-0.5
4,421,536	-		GFF4425	0.15	+0.3
4,421,536	-		GFF4425	0.15	-0.1
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4,421,561	-		GFF4425	0.18	-1.5
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4,421,563	+		GFF4425	0.18	-0.4
4,421,563	+		GFF4425	0.18	+0.1
4,421,563	+		GFF4425	0.18	-2.0
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4,421,563	+		GFF4425	0.18	+0.5
4,421,563	+		GFF4425	0.18	+0.2
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4,421,584	+		GFF4425	0.20	-2.9
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4,421,611	+		GFF4425	0.23	-1.3
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4,421,628	+		GFF4425	0.25	-0.1
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4,421,653	-		GFF4425	0.28	+0.8
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4,421,701	+		GFF4425	0.33	-0.3
4,421,701	+		GFF4425	0.33	-0.1
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4,421,701	+		GFF4425	0.33	+1.0
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4,421,701	+		GFF4425	0.33	+1.0
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4,421,701	+		GFF4425	0.33	-0.0
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4,421,709	-		GFF4425	0.34	-2.0
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4,421,709	-		GFF4425	0.34	-0.3
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4,421,931	-		GFF4425	0.59	+1.1
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4,421,957	+		GFF4425	0.61	-1.9
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4,421,965	-		GFF4425	0.62	-2.1
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4,422,069	+		GFF4425	0.74	-0.0
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4,422,129	+		GFF4425	0.80	-0.9
4,422,129	+		GFF4425	0.80	-1.1
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4,422,198	+		GFF4425	0.88	-0.0
4,422,198	+		GFF4425	0.88	+0.1
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4,422,216	+				-2.0
4,422,247	+				+0.3
4,422,247	+				-0.3
4,422,254	-				-0.1
4,422,277	-				-0.6
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