Strain Fitness in Sphingobium sp. HT1-2 around GFF4381

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,380,765	-		GFF4379	0.36	-1.0
4,380,790	+		GFF4379	0.41	-2.2
4,380,798	-		GFF4379	0.43	+0.3
4,380,798	-		GFF4379	0.43	+0.4
4,380,798	-		GFF4379	0.43	-0.7
4,380,798	-		GFF4379	0.43	-0.5
4,380,809	-		GFF4379	0.45	+0.2
4,380,817	-		GFF4379	0.46	-0.7
4,380,822	+		GFF4379	0.47	-0.8
4,380,828	+		GFF4379	0.48	-1.7
4,380,833	+		GFF4379	0.49	-0.6
4,380,836	-		GFF4379	0.50	+0.4
4,380,863	-		GFF4379	0.55	-0.5
4,380,879	+		GFF4379	0.58	+0.7
4,380,887	+		GFF4379	0.60	+0.7
4,380,895	-		GFF4379	0.61	-0.5
4,380,896	-		GFF4379	0.62	+1.2
4,380,906	-		GFF4379	0.64	+0.1
4,380,918	-		GFF4379	0.66	-0.7
4,380,920	+		GFF4379	0.66	+0.4
4,380,920	+		GFF4379	0.66	+0.5
4,380,921	+		GFF4379	0.66	-0.4
4,380,927	-		GFF4379	0.68	-0.3
4,380,928	-		GFF4379	0.68	+0.3
4,380,929	-		GFF4379	0.68	-0.7
4,380,939	+		GFF4379	0.70	-1.4
4,380,939	+		GFF4379	0.70	-3.2
4,380,944	+		GFF4379	0.71	+0.3
4,380,949	+		GFF4379	0.72	+1.4
4,380,952	-		GFF4379	0.72	-0.4
4,380,964	-		GFF4379	0.75	-0.3
4,380,978	+		GFF4379	0.78	+0.1
4,380,991	+		GFF4379	0.80	-2.0
4,380,992	-		GFF4379	0.80	-1.2
4,381,004	+		GFF4379	0.83	-0.9
4,381,031	+		GFF4379	0.88	-1.8
4,381,039	-		GFF4379	0.89	-0.2
4,381,062	+				-0.2
4,381,075	-				-0.9
4,381,082	+				-0.7
4,381,082	+				-0.5
4,381,090	-				+0.7
4,381,090	-				+0.9
4,381,090	-				+0.1
4,381,100	-				+0.1
4,381,102	-				-0.9
4,381,102	-				+0.1
4,381,102	-				+0.1
4,381,104	-				-1.8
4,381,112	-				-2.4
4,381,112	-				+0.5
4,381,127	+				+1.0
4,381,136	-				-0.7
4,381,153	-				-0.7
4,381,169	+				+0.4
4,381,177	-				-0.7
4,381,177	-				-2.5
4,381,193	-				-0.6
4,381,203	+				+0.8
4,381,234	-		GFF4380	0.14	-0.7
4,381,249	+		GFF4380	0.17	-1.2
4,381,250	-		GFF4380	0.18	+1.8
4,381,252	-		GFF4380	0.18	-0.2
4,381,257	-		GFF4380	0.19	-1.2
4,381,257	-		GFF4380	0.19	-1.0
4,381,262	+		GFF4380	0.20	+0.3
4,381,267	+		GFF4380	0.21	+0.6
4,381,277	-		GFF4380	0.23	-2.0
4,381,294	+		GFF4380	0.26	-2.1
4,381,302	-		GFF4380	0.27	-2.2
4,381,306	+		GFF4380	0.28	+0.7
4,381,335	-		GFF4380	0.34	+0.3
4,381,340	+		GFF4380	0.35	+0.1
4,381,375	+		GFF4380	0.41	+0.6
4,381,378	-		GFF4380	0.42	-1.5
4,381,383	-		GFF4380	0.43	+0.3
4,381,384	+		GFF4380	0.43	-0.5
4,381,384	+		GFF4380	0.43	-1.8
4,381,392	-		GFF4380	0.45	-0.0
4,381,402	-		GFF4380	0.46	-1.2
4,381,427	+		GFF4380	0.51	+0.5
4,381,431	-		GFF4380	0.52	+0.0
4,381,457	+		GFF4380	0.57	-0.5
4,381,459	+		GFF4380	0.57	-0.8
4,381,466	-		GFF4380	0.59	-0.5
4,381,467	-		GFF4380	0.59	-0.5
4,381,467	-		GFF4380	0.59	-0.7
4,381,467	-		GFF4380	0.59	+0.5
4,381,468	+		GFF4380	0.59	+0.5
4,381,478	+		GFF4380	0.61	-0.1
4,381,478	+		GFF4380	0.61	-0.4
4,381,483	+		GFF4380	0.62	-0.7
4,381,486	-		GFF4380	0.62	+0.7
4,381,502	-		GFF4380	0.66	-1.4
4,381,505	+		GFF4380	0.66	+0.7
4,381,556	+		GFF4380	0.76	-0.8
4,381,594	-		GFF4380	0.83	+0.8
4,381,601	-		GFF4380	0.84	-1.3
4,381,637	+				-1.8
4,381,734	+				+0.3
4,381,734	+				-1.2
4,381,746	+				+0.5
4,381,756	-				-2.5
4,381,762	+				+0.2
4,381,762	+				-0.1
4,381,762	+				+0.3
4,381,770	-				-0.7
4,381,770	-				-0.7
4,381,770	-				+0.1
4,381,770	-				-0.7
4,381,779	+				-1.2
4,381,796	+				-0.9
4,381,801	+				-2.5
4,381,804	-				-0.1
4,381,807	+				-1.2
4,381,807	+				-0.2
4,381,812	+				-1.5
4,381,815	-				-0.6
4,381,825	-				+0.5
4,381,827	+				-0.6
4,381,835	-				-0.5
4,381,846	-				-0.1
4,381,846	-				+0.7
4,381,846	-				-0.7
4,381,846	-				+0.0
4,381,854	+				+1.3
4,381,878	+				-1.9
4,381,881	+				+0.0
4,381,906	+		GFF4381	0.11	-0.6
4,381,913	+		GFF4381	0.12	+0.0
4,381,931	-		GFF4381	0.13	-2.2
4,381,931	-		GFF4381	0.13	+0.1
4,381,933	+		GFF4381	0.13	+0.8
4,381,933	+		GFF4381	0.13	+0.8
4,381,933	+		GFF4381	0.13	+0.2
4,381,933	+		GFF4381	0.13	+0.9
4,381,933	+		GFF4381	0.13	+0.4
4,381,933	+		GFF4381	0.13	+0.8
4,381,941	-		GFF4381	0.14	-0.8
4,381,941	-		GFF4381	0.14	-0.1
4,381,941	-		GFF4381	0.14	-1.9
4,381,941	-		GFF4381	0.14	-1.7
4,381,941	-		GFF4381	0.14	-2.0
4,381,941	-		GFF4381	0.14	-1.0
4,381,941	-		GFF4381	0.14	-0.5
4,381,941	-		GFF4381	0.14	-0.4
4,381,961	+		GFF4381	0.16	+0.5
4,381,961	+		GFF4381	0.16	+0.1
4,381,961	+		GFF4381	0.16	-1.3
4,381,969	-		GFF4381	0.16	-0.5
4,381,969	-		GFF4381	0.16	-0.5
4,381,969	-		GFF4381	0.16	-1.5
4,381,969	-		GFF4381	0.16	+0.3
4,381,969	-		GFF4381	0.16	+1.1
4,381,993	+		GFF4381	0.18	+0.2
4,381,993	+		GFF4381	0.18	+1.4
4,381,993	+		GFF4381	0.18	-0.1
4,381,993	+		GFF4381	0.18	-0.3
4,381,993	+		GFF4381	0.18	-1.7
4,381,993	+		GFF4381	0.18	-0.4
4,381,993	+		GFF4381	0.18	+0.8
4,381,993	+		GFF4381	0.18	-1.8
4,382,001	-		GFF4381	0.19	-2.0
4,382,001	-		GFF4381	0.19	-1.5
4,382,001	-		GFF4381	0.19	-0.0
4,382,001	-		GFF4381	0.19	+0.7
4,382,001	-		GFF4381	0.19	-2.1
4,382,007	+		GFF4381	0.19	-0.3
4,382,015	-		GFF4381	0.20	+0.5
4,382,017	+		GFF4381	0.20	-1.8
4,382,017	+		GFF4381	0.20	+0.1
4,382,025	-		GFF4381	0.20	+1.1
4,382,040	-		GFF4381	0.22	-0.3
4,382,072	+		GFF4381	0.24	+0.6
4,382,103	+		GFF4381	0.26	-1.3
4,382,103	+		GFF4381	0.26	-1.1
4,382,124	-		GFF4381	0.28	+1.2
4,382,125	+		GFF4381	0.28	-0.9
4,382,125	+		GFF4381	0.28	+0.3
4,382,133	-		GFF4381	0.29	-0.2
4,382,135	+		GFF4381	0.29	-0.7
4,382,143	-		GFF4381	0.29	+1.3
4,382,146	-		GFF4381	0.30	+0.1
4,382,150	+		GFF4381	0.30	+0.8
4,382,151	+		GFF4381	0.30	+1.4
4,382,177	+		GFF4381	0.32	+0.7
4,382,177	+		GFF4381	0.32	+0.3
4,382,180	-		GFF4381	0.32	-0.5
4,382,185	-		GFF4381	0.33	+0.1
4,382,185	-		GFF4381	0.33	-2.4
4,382,185	-		GFF4381	0.33	-2.2
4,382,185	-		GFF4381	0.33	-0.4
4,382,185	-		GFF4381	0.33	-0.8
4,382,185	-		GFF4381	0.33	+0.6
4,382,224	+		GFF4381	0.36	-0.3
4,382,224	+		GFF4381	0.36	-1.9
4,382,225	+		GFF4381	0.36	-0.1
4,382,227	-		GFF4381	0.36	+1.2
4,382,232	-		GFF4381	0.36	-0.5
4,382,270	+		GFF4381	0.39	-0.6
4,382,270	+		GFF4381	0.39	-0.4
4,382,270	+		GFF4381	0.39	-0.8
4,382,270	+		GFF4381	0.39	-0.4
4,382,270	+		GFF4381	0.39	-0.8
4,382,270	+		GFF4381	0.39	-1.2
4,382,270	+		GFF4381	0.39	+1.7
4,382,278	-		GFF4381	0.40	-1.2
4,382,278	-		GFF4381	0.40	-1.0
4,382,278	-		GFF4381	0.40	+0.6
4,382,278	-		GFF4381	0.40	-2.7
4,382,278	-		GFF4381	0.40	+0.3
4,382,302	-		GFF4381	0.42	-0.5
4,382,303	+		GFF4381	0.42	+0.6
4,382,304	+		GFF4381	0.42	-0.4
4,382,304	+		GFF4381	0.42	+0.2
4,382,311	-		GFF4381	0.42	-1.4
4,382,312	-		GFF4381	0.42	-0.0
4,382,345	-		GFF4381	0.45	+1.7
4,382,351	+		GFF4381	0.45	-0.4
4,382,355	-		GFF4381	0.46	-1.9
4,382,360	+		GFF4381	0.46	+0.7
4,382,370	+		GFF4381	0.47	+0.3
4,382,370	+		GFF4381	0.47	-1.1
4,382,389	+		GFF4381	0.48	+0.2
4,382,397	+		GFF4381	0.49	+0.3
4,382,397	+		GFF4381	0.49	-0.3
4,382,397	+		GFF4381	0.49	-0.7
4,382,397	+		GFF4381	0.49	-0.8
4,382,397	+		GFF4381	0.49	-0.7
4,382,405	-		GFF4381	0.49	+0.4
4,382,405	-		GFF4381	0.49	-0.4
4,382,405	-		GFF4381	0.49	-0.5
4,382,405	-		GFF4381	0.49	+0.0
4,382,405	-		GFF4381	0.49	+0.8
4,382,405	-		GFF4381	0.49	+0.7
4,382,405	-		GFF4381	0.49	-0.1
4,382,405	-		GFF4381	0.49	-1.1
4,382,405	-		GFF4381	0.49	+1.6
4,382,405	-		GFF4381	0.49	-0.5
4,382,413	+		GFF4381	0.50	+0.6
4,382,413	+		GFF4381	0.50	-1.4
4,382,415	+		GFF4381	0.50	+0.3
4,382,416	+		GFF4381	0.50	-1.8
4,382,416	-		GFF4381	0.50	-0.1
4,382,417	+		GFF4381	0.50	-1.7
4,382,421	-		GFF4381	0.51	-0.3
4,382,484	+		GFF4381	0.56	-2.0
4,382,489	+		GFF4381	0.56	-0.1
4,382,529	+		GFF4381	0.59	-2.7
4,382,529	+		GFF4381	0.59	-0.8
4,382,529	+		GFF4381	0.59	+1.1
4,382,529	+		GFF4381	0.59	+1.1
4,382,529	+		GFF4381	0.59	+0.6
4,382,529	+		GFF4381	0.59	-0.7
4,382,529	+		GFF4381	0.59	-0.3
4,382,529	+		GFF4381	0.59	+1.8
4,382,529	+		GFF4381	0.59	+0.2
4,382,529	+		GFF4381	0.59	-0.7
4,382,529	+		GFF4381	0.59	+0.0
4,382,529	+		GFF4381	0.59	-1.9
4,382,536	+		GFF4381	0.59	-0.9
4,382,536	+		GFF4381	0.59	-2.2
4,382,536	+		GFF4381	0.59	-0.1
4,382,536	+		GFF4381	0.59	+0.4
4,382,536	+		GFF4381	0.59	-0.1
4,382,536	+		GFF4381	0.59	-2.8
4,382,536	+		GFF4381	0.59	-1.4
4,382,536	+		GFF4381	0.59	-0.5
4,382,536	+		GFF4381	0.59	-0.2
4,382,537	-		GFF4381	0.60	+1.4
4,382,537	-		GFF4381	0.60	-0.5
4,382,537	-		GFF4381	0.60	+0.1
4,382,537	-		GFF4381	0.60	+1.1
4,382,537	-		GFF4381	0.60	-1.1
4,382,537	-		GFF4381	0.60	-0.4
4,382,537	-		GFF4381	0.60	-1.2
4,382,537	-		GFF4381	0.60	-0.7
4,382,537	-		GFF4381	0.60	-0.8
4,382,537	-		GFF4381	0.60	-1.8
4,382,537	-		GFF4381	0.60	+0.1
4,382,537	-		GFF4381	0.60	+0.4
4,382,544	-		GFF4381	0.60	+0.9
4,382,544	-		GFF4381	0.60	-0.4
4,382,544	-		GFF4381	0.60	-1.2
4,382,544	-		GFF4381	0.60	-1.5
4,382,544	-		GFF4381	0.60	-0.4
4,382,544	-		GFF4381	0.60	-0.5
4,382,544	-		GFF4381	0.60	-0.5
4,382,544	-		GFF4381	0.60	+0.5
4,382,544	-		GFF4381	0.60	+0.5
4,382,546	+		GFF4381	0.60	-0.7
4,382,556	-		GFF4381	0.61	+0.1
4,382,562	+		GFF4381	0.61	+0.1
4,382,562	+		GFF4381	0.61	-0.9
4,382,562	+		GFF4381	0.61	+1.1
4,382,562	+		GFF4381	0.61	-1.0
4,382,570	-		GFF4381	0.62	+0.4
4,382,570	-		GFF4381	0.62	-1.3
4,382,570	-		GFF4381	0.62	-0.7
4,382,587	+		GFF4381	0.63	-1.9
4,382,587	+		GFF4381	0.63	+1.3
4,382,587	+		GFF4381	0.63	+1.0
4,382,595	-		GFF4381	0.64	-1.8
4,382,597	+		GFF4381	0.64	+0.1
4,382,600	-		GFF4381	0.64	-1.1
4,382,605	-		GFF4381	0.65	+1.2
4,382,607	+		GFF4381	0.65	-0.4
4,382,607	+		GFF4381	0.65	-2.2
4,382,610	-		GFF4381	0.65	+0.3
4,382,617	+		GFF4381	0.66	-0.1
4,382,620	-		GFF4381	0.66	+0.1
4,382,620	-		GFF4381	0.66	+0.3
4,382,625	-		GFF4381	0.66	-0.3
4,382,625	-		GFF4381	0.66	-0.1
4,382,657	+		GFF4381	0.69	-0.4
4,382,657	+		GFF4381	0.69	-0.4
4,382,657	+		GFF4381	0.69	+0.1
4,382,670	-		GFF4381	0.70	-0.3
4,382,672	-		GFF4381	0.70	+0.3
4,382,681	+		GFF4381	0.71	-0.1
4,382,683	-		GFF4381	0.71	-0.7
4,382,710	+		GFF4381	0.73	+0.3
4,382,718	+		GFF4381	0.73	-1.2
4,382,720	+		GFF4381	0.74	+1.9
4,382,725	+		GFF4381	0.74	+0.2
4,382,725	+		GFF4381	0.74	-0.3
4,382,725	+		GFF4381	0.74	-1.4
4,382,725	+		GFF4381	0.74	+0.2
4,382,726	-		GFF4381	0.74	-2.3
4,382,733	-		GFF4381	0.75	-1.7
4,382,733	-		GFF4381	0.75	-0.9
4,382,733	-		GFF4381	0.75	+0.1
4,382,733	-		GFF4381	0.75	+0.1
4,382,735	+		GFF4381	0.75	-2.8
4,382,743	-		GFF4381	0.75	-1.1
4,382,743	-		GFF4381	0.75	-0.9
4,382,764	-		GFF4381	0.77	-1.2
4,382,801	+		GFF4381	0.80	-0.8
4,382,822	-		GFF4381	0.81	-1.2
4,382,822	-		GFF4381	0.81	-1.1
4,382,838	+		GFF4381	0.83	-0.1
4,382,846	-		GFF4381	0.83	-0.4
4,382,868	+		GFF4381	0.85	+0.6
4,382,885	-		GFF4381	0.86	-0.1
4,382,892	+		GFF4381	0.87	-0.9
4,382,892	-		GFF4381	0.87	+0.2
4,382,893	-		GFF4381	0.87	+0.1
4,382,928	+		GFF4381	0.89	+0.6
4,382,944	+				-0.2
4,382,944	+				+1.2
4,382,944	+				+1.1
4,382,944	+				-1.7
4,382,944	+				-0.3
4,382,944	+				-0.6
4,382,944	+				+0.7
4,382,946	-				+0.9
4,382,947	-				-0.4
4,382,952	-				-0.2
4,382,952	-				-1.5
4,382,952	-				+0.7
4,382,954	+				+0.3
4,382,962	-				-2.4
4,382,972	+				+0.3
4,382,980	-				-1.0
4,382,985	-				+1.7
4,382,988	+				-0.1
4,382,994	+				-0.9
4,382,996	+				-0.7
4,383,001	+				+1.5
4,383,009	-				-0.3
4,383,009	-				-0.9
4,383,020	-				+0.9
4,383,020	-				+0.5
4,383,020	-				+0.7
4,383,040	+				-0.2
4,383,040	+				-0.2
4,383,048	-				+0.5
4,383,050	+				+1.2
4,383,058	-				+0.4
4,383,070	+				-0.4
4,383,072	+				+0.3
4,383,078	+				-0.7
4,383,079	+				+1.0
4,383,082	-				+0.3
4,383,087	-				-0.1
4,383,113	-				-0.8
4,383,113	-				-0.5
4,383,115	+				-1.5
4,383,120	+				+0.3
4,383,123	-				-0.5
4,383,132	-				-0.1
4,383,134	+				-0.5
4,383,144	+				-2.4
4,383,164	+				-1.1
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4,383,167	-				-1.2
4,383,170	-				+0.4
4,383,172	-				+0.3
4,383,177	+				+0.7
4,383,185	-				+0.8
4,383,196	+				+0.3
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4,383,218	+				-1.4
4,383,218	+				-0.4
4,383,219	+				-1.2
4,383,222	-				-1.9
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4,383,229	+				-0.6
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4,383,717	-		GFF4382	0.81	-0.5
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4,383,750	+		GFF4382	0.86	-1.5
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4,383,758	-		GFF4382	0.88	-0.2
4,383,758	-		GFF4382	0.88	-0.1
4,383,774	+				+0.3
4,383,774	+				-3.8
4,383,774	+				-0.4
4,383,782	-				-2.2
4,383,787	-				+0.5
4,383,797	+				-0.4
4,383,805	-				-1.1
4,383,805	-				-0.8
4,383,805	-				+0.7
4,383,805	-				-0.9
4,383,816	+				+1.0
4,383,817	-				-0.7
4,383,823	+				-0.5
4,383,823	+				-1.4
4,383,824	-				-0.3
4,383,824	-				+0.0
4,383,824	-				-0.7
4,383,827	-				-1.0
4,383,831	-				-0.2
4,383,831	-				+0.8
4,383,831	-				-0.4
4,383,835	+				+0.2
4,383,848	+				-0.8
4,383,849	+				-0.8
4,383,856	-				+0.4
4,383,857	+				-0.5
4,383,858	-				-1.9
4,383,870	+				+0.2
4,383,880	-				-0.5
4,383,884	+				-0.4
4,383,884	+				-0.7
4,383,892	-				+0.8
4,383,892	-				-0.9
4,383,892	-				+0.7
4,383,892	-				-0.2
4,383,892	-				-1.7
4,383,892	-				+0.3
4,383,897	-				-0.9
4,383,903	+				+0.1
4,383,911	-		GFF4383	0.10	-1.5
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4,383,924	+		GFF4383	0.13	-1.0
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4,383,939	+		GFF4383	0.15	-0.6
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4,383,941	+		GFF4383	0.16	-2.7
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4,383,959	-		GFF4383	0.19	-1.5
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4,383,959	-		GFF4383	0.19	-0.3
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4,383,960	+		GFF4383	0.19	-2.2
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4,383,960	+		GFF4383	0.19	-2.3
4,383,960	+		GFF4383	0.19	-2.2
4,383,960	+		GFF4383	0.19	-0.8
4,383,960	+		GFF4383	0.19	+0.1
4,383,960	+		GFF4383	0.19	+0.3
4,383,960	+		GFF4383	0.19	+0.1
4,383,960	+		GFF4383	0.19	-1.0
4,383,960	+		GFF4383	0.19	+0.1
4,383,960	+		GFF4383	0.19	-2.2
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4,383,968	-		GFF4383	0.20	+0.3
4,383,968	-		GFF4383	0.20	-0.3
4,383,968	-		GFF4383	0.20	-1.5
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4,383,968	-		GFF4383	0.20	+0.1
4,383,968	-		GFF4383	0.20	-2.8
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4,383,988	-		GFF4383	0.24	-0.2
4,383,990	+		GFF4383	0.24	-0.7
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4,384,039	+		GFF4383	0.33	-1.2
4,384,057	+		GFF4383	0.36	-0.7
4,384,062	+		GFF4383	0.37	+0.3
4,384,065	-		GFF4383	0.37	-1.3