Strain Fitness in Sphingobium sp. HT1-2 around GFF4365

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,363,431	+				-0.6
4,363,431	+				+0.0
4,363,467	+				-1.0
4,363,485	+				+1.1
4,363,485	+				+0.2
4,363,485	+				-2.0
4,363,485	+				-2.0
4,363,485	+				+0.9
4,363,485	+				+1.1
4,363,485	+				-1.2
4,363,485	+				-1.9
4,363,485	+				+0.0
4,363,485	+				+0.8
4,363,485	+				-0.3
4,363,485	+				-1.9
4,363,485	+				+0.3
4,363,485	+				+0.6
4,363,490	+				-0.2
4,363,493	-				-0.3
4,363,493	-				-2.4
4,363,493	-				-0.9
4,363,493	-				+0.8
4,363,493	-				+0.7
4,363,493	-				-1.1
4,363,493	-				-0.9
4,363,493	-				+0.0
4,363,493	-				-0.8
4,363,493	-				+0.7
4,363,509	-				+0.3
4,363,513	-				-0.7
4,363,527	+				-1.0
4,363,527	+				-0.7
4,363,527	+				-1.9
4,363,527	+				+0.9
4,363,532	+				-0.1
4,363,535	+				-1.1
4,363,535	-				-0.9
4,363,535	-				+1.2
4,363,535	-				-0.6
4,363,535	-				-0.1
4,363,535	-				-0.4
4,363,535	-				-1.5
4,363,561	-				-1.0
4,363,561	-				-1.2
4,363,561	-				-0.5
4,363,561	-				+0.1
4,363,561	-				+0.1
4,363,563	+				+0.7
4,363,568	+				-0.1
4,363,570	+				-0.3
4,363,570	+				+0.8
4,363,571	-				-0.8
4,363,605	+				-0.5
4,363,605	-				-0.7
4,363,607	-				-0.4
4,363,609	+				+0.4
4,363,615	+				+0.1
4,363,615	+				-2.5
4,363,615	+				-0.3
4,363,615	+				-1.1
4,363,615	+				-0.8
4,363,615	+				-0.5
4,363,615	+				+0.0
4,363,615	+				+0.1
4,363,615	+				-0.8
4,363,615	+				-0.7
4,363,615	+				-2.3
4,363,615	+				-0.4
4,363,615	+				-1.2
4,363,615	+				-0.3
4,363,615	+				-2.1
4,363,622	-				-2.3
4,363,623	-				+0.4
4,363,623	-				-1.4
4,363,623	-				-1.0
4,363,623	-				+0.3
4,363,623	-				-0.2
4,363,623	-				+1.0
4,363,623	-				-1.8
4,363,623	-				-0.8
4,363,623	-				+0.0
4,363,623	-				-1.1
4,363,623	-				-0.3
4,363,623	-				-0.3
4,363,623	-				-0.1
4,363,623	-				+0.6
4,363,623	-				+0.5
4,363,623	-				-0.6
4,363,623	-				+0.6
4,363,627	+				-1.5
4,363,633	-				-0.6
4,363,640	+				-0.6
4,363,642	+				-0.6
4,363,642	+				-1.1
4,363,642	+				+0.8
4,363,642	+				-0.9
4,363,642	+				+0.5
4,363,642	+				+0.5
4,363,642	+				+0.2
4,363,642	+				+0.0
4,363,642	+				-1.4
4,363,648	+				-0.4
4,363,650	-				-0.6
4,363,650	-				+0.1
4,363,650	-				+0.1
4,363,650	-				-1.0
4,363,650	-				-1.5
4,363,650	-				+0.3
4,363,650	-				-0.4
4,363,653	+				+0.5
4,363,656	-				-0.9
4,363,670	-				+0.7
4,363,673	-				+0.7
4,363,678	+				+0.7
4,363,678	+				-0.0
4,363,686	-				+0.3
4,363,690	+				-1.8
4,363,698	-		GFF4364	0.10	+0.6
4,363,700	+		GFF4364	0.10	+0.4
4,363,700	+		GFF4364	0.10	-0.9
4,363,708	-		GFF4364	0.12	+1.2
4,363,724	+		GFF4364	0.15	-1.8
4,363,742	+		GFF4364	0.18	-1.8
4,363,744	-		GFF4364	0.19	-1.9
4,363,750	-		GFF4364	0.20	+0.8
4,363,764	-		GFF4364	0.22	-0.1
4,363,766	-		GFF4364	0.23	+0.5
4,363,812	+		GFF4364	0.31	+0.9
4,363,812	+		GFF4364	0.31	+1.2
4,363,812	+		GFF4364	0.31	-1.6
4,363,824	+		GFF4364	0.33	-0.4
4,363,857	-		GFF4364	0.39	-2.5
4,363,880	+		GFF4364	0.44	-1.6
4,363,880	+		GFF4364	0.44	-0.9
4,363,881	+		GFF4364	0.44	-1.6
4,363,890	+		GFF4364	0.45	-2.3
4,363,890	+		GFF4364	0.45	-0.4
4,363,893	-		GFF4364	0.46	-0.3
4,363,896	+		GFF4364	0.47	+0.3
4,363,896	+		GFF4364	0.47	-0.7
4,363,898	-		GFF4364	0.47	+0.1
4,363,904	+		GFF4364	0.48	-0.7
4,363,909	+		GFF4364	0.49	+0.1
4,363,911	+		GFF4364	0.49	-0.1
4,363,917	-		GFF4364	0.50	+0.4
4,363,919	-		GFF4364	0.51	+0.0
4,363,919	-		GFF4364	0.51	-0.2
4,363,922	+		GFF4364	0.51	-2.1
4,363,940	-		GFF4364	0.55	-0.9
4,363,986	-		GFF4364	0.63	-0.3
4,363,994	-		GFF4364	0.65	+0.2
4,363,997	+		GFF4364	0.65	+0.6
4,363,997	+		GFF4364	0.65	-1.1
4,363,997	+		GFF4364	0.65	-1.7
4,364,000	-		GFF4364	0.66	+0.8
4,364,001	-		GFF4364	0.66	+0.1
4,364,003	+		GFF4364	0.66	-0.4
4,364,003	+		GFF4364	0.66	+0.6
4,364,003	+		GFF4364	0.66	-0.7
4,364,004	+		GFF4364	0.66	+0.1
4,364,004	+		GFF4364	0.66	-1.2
4,364,005	-		GFF4364	0.67	+0.7
4,364,005	-		GFF4364	0.67	-1.2
4,364,005	-		GFF4364	0.67	+0.1
4,364,005	-		GFF4364	0.67	+0.3
4,364,011	-		GFF4364	0.68	+0.6
4,364,011	-		GFF4364	0.68	-0.1
4,364,011	-		GFF4364	0.68	-0.1
4,364,011	-		GFF4364	0.68	+0.1
4,364,011	-		GFF4364	0.68	-0.9
4,364,011	-		GFF4364	0.68	-0.6
4,364,011	-		GFF4364	0.68	-0.2
4,364,011	-		GFF4364	0.68	-0.3
4,364,049	+		GFF4364	0.75	+0.9
4,364,072	+		GFF4364	0.79	+0.1
4,364,080	-		GFF4364	0.80	-1.7
4,364,084	+		GFF4364	0.81	-1.1
4,364,092	-		GFF4364	0.83	+0.7
4,364,092	-		GFF4364	0.83	+0.4
4,364,106	-		GFF4364	0.85	+0.2
4,364,127	+		GFF4364	0.89	+0.3
4,364,127	+		GFF4364	0.89	-0.5
4,364,127	+		GFF4364	0.89	+0.4
4,364,127	+		GFF4364	0.89	-0.8
4,364,127	+		GFF4364	0.89	-2.1
4,364,135	-				-0.1
4,364,135	-				+0.4
4,364,135	-				-0.9
4,364,137	+				+0.2
4,364,145	+				+0.7
4,364,150	+				-1.1
4,364,165	-				-0.1
4,364,180	+				+0.4
4,364,181	+				-1.5
4,364,188	-				+0.0
4,364,195	-				-1.1
4,364,226	+				+0.4
4,364,241	-				-0.1
4,364,243	+				+0.0
4,364,243	+				+0.2
4,364,251	-				-1.1
4,364,251	-				-0.8
4,364,251	-				+0.8
4,364,258	-				-0.1
4,364,260	+				+0.3
4,364,261	+				-0.7
4,364,263	-				+0.2
4,364,264	-				-1.1
4,364,264	-				-1.0
4,364,268	-				-1.8
4,364,288	-				-1.1
4,364,299	+				-0.2
4,364,299	+				-0.0
4,364,299	+				+0.9
4,364,299	+				+0.2
4,364,312	-				+0.4
4,364,365	-		GFF4365	0.16	-0.6
4,364,408	+		GFF4365	0.25	-2.1
4,364,423	-		GFF4365	0.28	-0.6
4,364,423	-		GFF4365	0.28	+0.4
4,364,435	+		GFF4365	0.30	-1.1
4,364,442	-		GFF4365	0.32	+1.2
4,364,449	+		GFF4365	0.33	+0.7
4,364,452	-		GFF4365	0.34	+0.4
4,364,487	-		GFF4365	0.41	+0.8
4,364,495	+		GFF4365	0.43	-0.7
4,364,503	-		GFF4365	0.45	-2.6
4,364,509	+		GFF4365	0.46	+1.5
4,364,525	+		GFF4365	0.49	-2.9
4,364,525	+		GFF4365	0.49	+0.4
4,364,530	+		GFF4365	0.50	-0.8
4,364,535	+		GFF4365	0.51	+0.2
4,364,543	-		GFF4365	0.53	-1.5
4,364,558	-		GFF4365	0.56	+0.6
4,364,573	+		GFF4365	0.59	-0.7
4,364,578	+		GFF4365	0.60	-1.2
4,364,587	+		GFF4365	0.62	+0.3
4,364,590	-		GFF4365	0.63	-1.5
4,364,592	+		GFF4365	0.63	-0.1
4,364,600	-		GFF4365	0.65	+1.0
4,364,602	-		GFF4365	0.65	+0.6
4,364,605	+		GFF4365	0.66	+0.2
4,364,627	+		GFF4365	0.71	-2.1
4,364,627	+		GFF4365	0.71	-0.3
4,364,635	-		GFF4365	0.72	-0.6
4,364,678	+		GFF4365	0.81	+1.2
4,364,678	+		GFF4365	0.81	-0.6
4,364,678	+		GFF4365	0.81	-0.4
4,364,680	+		GFF4365	0.82	+0.8
4,364,686	-		GFF4365	0.83	-0.1
4,364,686	-		GFF4365	0.83	+0.1
4,364,688	+		GFF4365	0.83	+0.1
4,364,688	+		GFF4365	0.83	+0.9
4,364,696	-		GFF4365	0.85	-0.9
4,364,702	+		GFF4365	0.86	-0.3
4,364,709	-		GFF4365	0.88	+0.1
4,364,720	-				+0.1
4,364,730	+				+0.5
4,364,731	-				+1.4
4,364,737	-				-2.4
4,364,748	+				-0.4
4,364,761	-				-1.0
4,364,761	-				-1.0
4,364,779	-				-2.3
4,364,784	-				-0.1
4,364,788	+				+0.5
4,364,791	-				-0.3
4,364,791	-				-0.4
4,364,791	-				-1.0
4,364,793	+				+0.3
4,364,796	-				-1.4
4,364,796	-				+0.4
4,364,807	-				-0.5
4,364,814	+				+0.8
4,364,814	+				-0.3
4,364,814	+				-0.6
4,364,814	+				+1.1
4,364,820	+				-0.3
4,364,820	+				-0.7
4,364,822	-				-1.9
4,364,822	-				-0.2
4,364,822	-				+0.2
4,364,822	-				-1.7
4,364,829	-				+0.4
4,364,861	-				-1.8
4,364,866	-				-0.8
4,364,866	-				-0.6
4,364,876	+				-0.2
4,364,876	+				+0.4
4,364,884	-				-0.3
4,364,884	-				-0.5
4,364,884	-				+0.6
4,364,894	+				-0.7
4,364,894	+				+1.2
4,364,894	+				-0.6
4,364,897	-				-1.5
4,364,899	+				+0.3
4,364,899	+				+0.6
4,364,900	+				-0.2
4,364,900	+				+0.2
4,364,900	+				-0.7
4,364,900	+				-0.6
4,364,902	-				-1.1
4,364,902	-				+0.0
4,364,902	-				-0.3
4,364,907	-				-0.4
4,364,908	-				-1.0
4,364,908	-				-0.0
4,364,927	+				-1.4
4,364,927	+				-0.6
4,364,927	+				-0.5
4,364,927	+				-0.2
4,364,931	-				+0.4
4,364,935	-				+1.1
4,364,935	-				-0.7
4,364,946	+				-1.3
4,364,946	+				+0.4
4,364,946	+				+0.0
4,364,976	+				-0.3
4,364,983	+				+0.5
4,364,984	+				+0.9
4,364,984	-				-1.1
4,364,984	-				+1.5
4,365,024	+				-2.3
4,365,024	+				+0.6
4,365,024	+				-0.3
4,365,024	+				+0.3
4,365,024	+				+0.2
4,365,024	+				+0.2
4,365,024	+				+0.0
4,365,024	+				+0.1
4,365,024	+				+1.4
4,365,024	+				-1.6
4,365,024	+				-0.5
4,365,024	+				-1.4
4,365,024	+				-0.3
4,365,024	+				-0.4
4,365,029	+				-1.6
4,365,029	+				+0.5
4,365,029	+				+0.2
4,365,029	+				+0.4
4,365,029	+				+0.6
4,365,029	+				+0.8
4,365,029	+				-1.5
4,365,029	+				-0.3
4,365,029	+				-1.6
4,365,032	-				-0.4
4,365,032	-				-0.1
4,365,032	-				+0.2
4,365,032	-				-2.8
4,365,032	-				+0.7
4,365,032	-				-0.3
4,365,032	-				-0.3
4,365,032	-				+0.0
4,365,032	-				-1.0
4,365,032	-				-2.5
4,365,032	-				-0.6
4,365,032	-				+0.1
4,365,032	-				-1.5
4,365,032	-				-0.2
4,365,032	-				-0.8
4,365,032	-				+1.1
4,365,034	+				-0.2
4,365,037	-				-1.3
4,365,037	-				+0.6
4,365,037	-				-1.1
4,365,037	-				-1.5
4,365,037	-				-0.9
4,365,037	-				+0.7
4,365,037	-				+0.0
4,365,037	-				-1.1
4,365,039	+				+0.0
4,365,039	+				-0.8
4,365,041	+				+1.1
4,365,042	-				-0.8
4,365,047	-				-0.4
4,365,049	-				+0.6
4,365,056	+				+0.4
4,365,059	-				-0.8
4,365,066	+				+0.4
4,365,076	+		GFF4366	0.11	+0.2
4,365,081	+		GFF4366	0.12	+0.6
4,365,084	+		GFF4366	0.12	-0.1
4,365,093	+		GFF4366	0.13	-2.0
4,365,098	+		GFF4366	0.13	+1.8
4,365,098	+		GFF4366	0.13	+1.3
4,365,099	+		GFF4366	0.14	+0.6
4,365,099	+		GFF4366	0.14	+0.7
4,365,099	+		GFF4366	0.14	-0.4
4,365,101	-		GFF4366	0.14	-0.1
4,365,101	-		GFF4366	0.14	+1.0
4,365,101	-		GFF4366	0.14	-2.2
4,365,101	-		GFF4366	0.14	-1.2
4,365,105	+		GFF4366	0.14	-0.6
4,365,105	+		GFF4366	0.14	-0.6
4,365,105	+		GFF4366	0.14	-1.6
4,365,106	-		GFF4366	0.14	-1.0
4,365,106	-		GFF4366	0.14	+0.1
4,365,106	-		GFF4366	0.14	+0.7
4,365,106	-		GFF4366	0.14	+0.6
4,365,106	-		GFF4366	0.14	+1.1
4,365,107	-		GFF4366	0.14	-0.6
4,365,107	-		GFF4366	0.14	-1.1
4,365,107	-		GFF4366	0.14	-0.9
4,365,107	-		GFF4366	0.14	+0.2
4,365,113	-		GFF4366	0.15	+0.4
4,365,113	-		GFF4366	0.15	+0.2
4,365,113	-		GFF4366	0.15	+0.7
4,365,123	+		GFF4366	0.16	+0.1
4,365,123	+		GFF4366	0.16	+0.9
4,365,153	+		GFF4366	0.19	-1.2
4,365,156	-		GFF4366	0.20	-1.5
4,365,156	-		GFF4366	0.20	-1.8
4,365,184	-		GFF4366	0.23	-0.8
4,365,186	+		GFF4366	0.23	+0.0
4,365,194	-		GFF4366	0.24	-1.6
4,365,194	-		GFF4366	0.24	-0.6
4,365,194	-		GFF4366	0.24	+1.7
4,365,194	-		GFF4366	0.24	-0.6
4,365,194	-		GFF4366	0.24	+0.2
4,365,194	-		GFF4366	0.24	-0.9
4,365,194	-		GFF4366	0.24	-1.9
4,365,194	-		GFF4366	0.24	-0.2
4,365,207	+		GFF4366	0.25	-0.1
4,365,208	+		GFF4366	0.25	-0.2
4,365,224	-		GFF4366	0.27	-0.4
4,365,224	-		GFF4366	0.27	-0.7
4,365,224	-		GFF4366	0.27	+0.3
4,365,224	-		GFF4366	0.27	-0.6
4,365,226	+		GFF4366	0.27	+0.5
4,365,227	+		GFF4366	0.27	-0.1
4,365,227	+		GFF4366	0.27	-0.5
4,365,232	+		GFF4366	0.28	-0.3
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