Strain Fitness in Sphingobium sp. HT1-2 around GFF4354

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,353,704	+		GFF4352	0.80	-1.5
4,353,707	-		GFF4352	0.80	-1.7
4,353,709	+		GFF4352	0.80	+0.5
4,353,709	+		GFF4352	0.80	-1.7
4,353,709	+		GFF4352	0.80	-0.3
4,353,717	-		GFF4352	0.81	+0.5
4,353,717	-		GFF4352	0.81	+1.7
4,353,717	-		GFF4352	0.81	+0.0
4,353,719	-		GFF4352	0.81	+0.1
4,353,740	-		GFF4352	0.82	-0.2
4,353,759	+		GFF4352	0.83	-0.6
4,353,764	+		GFF4352	0.84	-0.4
4,353,772	-		GFF4352	0.84	-0.9
4,353,782	-		GFF4352	0.85	-0.0
4,353,784	+		GFF4352	0.85	+0.6
4,353,821	-		GFF4352	0.87	-0.2
4,353,821	-		GFF4352	0.87	-0.5
4,353,830	+		GFF4352	0.88	+0.6
4,353,836	+		GFF4352	0.88	-0.5
4,353,836	+		GFF4352	0.88	-0.5
4,353,836	+		GFF4352	0.88	-2.0
4,353,838	-		GFF4352	0.88	+0.0
4,353,844	-		GFF4352	0.89	+0.7
4,353,844	-		GFF4352	0.89	+1.5
4,353,844	-		GFF4352	0.89	+1.0
4,353,844	-		GFF4352	0.89	-0.1
4,353,844	-		GFF4352	0.89	+0.6
4,353,851	+		GFF4352	0.89	-1.7
4,353,851	+		GFF4352	0.89	-1.6
4,353,876	+				-1.6
4,353,876	+				-1.8
4,353,876	+				-1.2
4,353,876	+				-0.2
4,353,884	-				-0.5
4,353,884	-				-0.1
4,353,886	-				-0.3
4,353,906	+				+0.2
4,353,914	-				-0.8
4,353,914	-				-0.1
4,353,916	+				-2.1
4,353,916	+				-1.7
4,353,924	-				-1.4
4,353,926	+				+0.7
4,353,926	+				-0.6
4,353,934	-				+0.5
4,353,935	+				+1.1
4,353,935	+				+0.2
4,353,936	+				+0.6
4,353,943	-				-0.7
4,353,952	+				-0.9
4,353,971	+				+0.4
4,353,971	+				-0.9
4,353,972	+				+0.7
4,353,979	-				+0.1
4,353,985	-				-0.5
4,353,990	+				+0.8
4,353,996	+				+0.6
4,353,999	-				-1.1
4,354,004	-				-0.5
4,354,018	+				+0.6
4,354,025	+				+1.0
4,354,033	-				+0.5
4,354,046	-				-0.1
4,354,140	+				+0.1
4,354,163	+				+0.7
4,354,163	+				+0.2
4,354,171	-				-0.7
4,354,188	+				-0.0
4,354,189	-				-0.5
4,354,189	-				-0.2
4,354,196	-				+1.2
4,354,196	-				-0.5
4,354,198	+				+1.1
4,354,226	-		GFF4353	0.15	-0.3
4,354,255	+		GFF4353	0.21	-0.3
4,354,255	+		GFF4353	0.21	-1.4
4,354,255	+		GFF4353	0.21	+0.8
4,354,255	+		GFF4353	0.21	-0.5
4,354,255	+		GFF4353	0.21	+0.7
4,354,257	-		GFF4353	0.22	+1.8
4,354,263	-		GFF4353	0.23	+0.4
4,354,275	+		GFF4353	0.26	+1.0
4,354,277	+		GFF4353	0.26	+0.4
4,354,277	+		GFF4353	0.26	-1.2
4,354,277	+		GFF4353	0.26	+0.6
4,354,277	+		GFF4353	0.26	+0.1
4,354,277	+		GFF4353	0.26	+0.2
4,354,277	+		GFF4353	0.26	-0.7
4,354,277	+		GFF4353	0.26	+0.8
4,354,282	+		GFF4353	0.27	-0.6
4,354,285	-		GFF4353	0.28	-0.2
4,354,285	-		GFF4353	0.28	-0.2
4,354,285	-		GFF4353	0.28	+0.5
4,354,285	-		GFF4353	0.28	+0.4
4,354,285	-		GFF4353	0.28	+0.6
4,354,290	-		GFF4353	0.29	+0.7
4,354,309	+		GFF4353	0.33	+1.1
4,354,348	+		GFF4353	0.42	+1.1
4,354,356	-		GFF4353	0.44	+1.8
4,354,356	-		GFF4353	0.44	+0.0
4,354,365	+		GFF4353	0.46	+0.5
4,354,365	+		GFF4353	0.46	-0.5
4,354,373	-		GFF4353	0.48	-0.7
4,354,375	+		GFF4353	0.48	+0.6
4,354,399	-		GFF4353	0.53	+0.6
4,354,399	-		GFF4353	0.53	+0.3
4,354,404	-		GFF4353	0.55	-0.3
4,354,421	+		GFF4353	0.58	-0.3
4,354,440	+		GFF4353	0.63	+1.0
4,354,482	-		GFF4353	0.72	+0.0
4,354,505	+		GFF4353	0.77	+1.3
4,354,505	+		GFF4353	0.77	-0.4
4,354,514	-		GFF4353	0.79	+0.3
4,354,515	+		GFF4353	0.79	+0.0
4,354,515	+		GFF4353	0.79	-0.3
4,354,516	+		GFF4353	0.80	-0.4
4,354,523	-		GFF4353	0.81	+0.5
4,354,543	+		GFF4353	0.86	-1.5
4,354,543	+		GFF4353	0.86	-0.6
4,354,543	+		GFF4353	0.86	+0.4
4,354,543	+		GFF4353	0.86	+0.7
4,354,543	+		GFF4353	0.86	-0.5
4,354,543	+		GFF4353	0.86	-0.0
4,354,548	+		GFF4353	0.87	-0.4
4,354,551	-		GFF4353	0.87	-1.2
4,354,551	-		GFF4353	0.87	-1.5
4,354,551	-		GFF4353	0.87	-0.5
4,354,551	-		GFF4353	0.87	-0.0
4,354,558	+		GFF4353	0.89	+0.1
4,354,586	-				-2.2
4,354,640	+				-1.6
4,354,659	+				-0.5
4,354,659	-				-0.8
4,354,668	+				-0.2
4,354,669	-				-0.7
4,354,733	+		GFF4354	0.19	-0.6
4,354,757	+		GFF4354	0.34	-1.3
4,354,763	-		GFF4354	0.38	+0.5
4,354,765	-		GFF4354	0.39	-0.7
4,354,776	+		GFF4354	0.45	-0.0
4,354,784	-		GFF4354	0.50	+0.3
4,354,784	-		GFF4354	0.50	+0.6
4,354,798	+		GFF4354	0.59	-0.1
4,354,836	-		GFF4354	0.82	-1.1
4,354,846	+		GFF4354	0.88	+0.3
4,354,848	+		GFF4354	0.89	-0.8
4,354,865	+				-0.5
4,354,878	+				-1.3
4,354,886	+				+0.2
4,354,886	-				-1.7
4,354,889	-				-0.0
4,354,894	-				-1.5
4,354,901	+				-0.1
4,354,901	+				+0.0
4,354,901	+				-0.7
4,354,904	-				-3.0
4,354,909	-				-0.1
4,354,919	-				-0.6
4,354,928	+				+0.4
4,354,941	-				+0.3
4,354,941	-				-0.2
4,354,946	-				+0.9
4,354,947	-				+0.2
4,354,947	-				-0.0
4,354,952	+				-0.0
4,354,964	-				-0.0
4,354,966	+				+0.1
4,354,968	-				+0.0
4,354,969	-				+0.1
4,354,974	-				+1.3
4,354,974	-				-0.2
4,354,976	+				+0.3
4,354,976	+				-0.5
4,354,984	-				-0.5
4,354,984	-				+0.1
4,354,986	-				+0.2
4,354,991	+				-0.2
4,354,997	+				-0.5
4,354,998	+				+0.1
4,354,998	+				+0.2
4,354,998	+				-0.4
4,355,006	-				-0.9
4,355,006	-				-1.0
4,355,006	-				+0.1
4,355,045	-				-0.4
4,355,051	-				-0.6
4,355,051	-				-0.2
4,355,053	+				+0.2
4,355,109	+				-0.8
4,355,109	+				-0.2
4,355,109	+				+0.1
4,355,109	+				-0.1
4,355,109	+				-0.1
4,355,109	+				-1.7
4,355,109	+				-1.7
4,355,109	+				+0.2
4,355,109	+				+0.4
4,355,109	+				-0.0
4,355,114	+				-0.7
4,355,117	-				+0.7
4,355,117	-				-1.7
4,355,117	-				+0.5
4,355,117	-				-0.7
4,355,117	-				-1.3
4,355,117	-				-0.8
4,355,117	-				-0.6
4,355,124	+				-1.5
4,355,132	-				+0.1
4,355,145	+				+1.1
4,355,145	+				-0.0
4,355,145	+				+0.4
4,355,145	+				+1.2
4,355,145	+				-0.0
4,355,145	+				+1.1
4,355,145	+				+0.1
4,355,145	+				-0.5
4,355,145	+				+0.0
4,355,145	+				+0.3
4,355,145	+				-0.3
4,355,145	+				-0.6
4,355,145	+				+0.0
4,355,151	+				-2.0
4,355,151	+				-1.3
4,355,151	+				+0.8
4,355,153	-				+0.0
4,355,153	-				+0.8
4,355,153	-				+0.2
4,355,153	-				-0.4
4,355,153	-				-0.9
4,355,153	-				-0.3
4,355,153	-				-1.5
4,355,153	-				+0.2
4,355,153	-				-0.5
4,355,153	-				-0.8
4,355,153	-				-1.0
4,355,153	-				+0.3
4,355,153	-				-2.3
4,355,153	-				-1.2
4,355,153	-				+1.0
4,355,153	-				+1.1
4,355,153	-				-0.6
4,355,153	-				-0.7
4,355,153	-				+0.8
4,355,153	-				-0.6
4,355,153	-				-1.0
4,355,172	+		GFF4355	0.14	+1.2
4,355,180	-		GFF4355	0.16	-0.1
4,355,191	+		GFF4355	0.19	-1.2
4,355,197	+		GFF4355	0.21	+0.8
4,355,236	+		GFF4355	0.31	-0.3
4,355,241	+		GFF4355	0.33	-1.0
4,355,241	+		GFF4355	0.33	-1.6
4,355,241	+		GFF4355	0.33	-1.1
4,355,241	+		GFF4355	0.33	+1.2
4,355,241	+		GFF4355	0.33	+1.3
4,355,241	+		GFF4355	0.33	-0.1
4,355,249	-		GFF4355	0.35	+0.8
4,355,249	-		GFF4355	0.35	+1.3
4,355,249	-		GFF4355	0.35	-0.1
4,355,249	-		GFF4355	0.35	-0.0
4,355,249	-		GFF4355	0.35	-0.1
4,355,249	-		GFF4355	0.35	-0.2
4,355,264	+		GFF4355	0.39	+0.9
4,355,272	-		GFF4355	0.41	+0.0
4,355,275	+		GFF4355	0.42	-0.6
4,355,308	-		GFF4355	0.50	+0.7
4,355,323	-		GFF4355	0.54	-0.9
4,355,342	-		GFF4355	0.59	-1.0
4,355,349	+		GFF4355	0.61	-2.9
4,355,357	+		GFF4355	0.63	-0.0
4,355,357	+		GFF4355	0.63	-0.6
4,355,357	+		GFF4355	0.63	-0.5
4,355,357	-		GFF4355	0.63	+0.1
4,355,359	-		GFF4355	0.64	-2.3
4,355,365	-		GFF4355	0.66	+0.4
4,355,382	-		GFF4355	0.70	+1.4
4,355,402	+		GFF4355	0.75	+0.6
4,355,429	-		GFF4355	0.83	-1.7
4,355,437	+		GFF4355	0.85	+0.6
4,355,442	+		GFF4355	0.86	+0.4
4,355,442	+		GFF4355	0.86	-0.7
4,355,442	+		GFF4355	0.86	-0.5
4,355,445	-		GFF4355	0.87	-0.6
4,355,445	-		GFF4355	0.87	-0.8
4,355,450	-		GFF4355	0.88	-0.1
4,355,462	-				-1.2
4,355,462	-				+0.2
4,355,505	+				-0.3
4,355,505	+				-1.9
4,355,505	+				-0.9
4,355,505	+				-0.7
4,355,506	-				-1.2
4,355,513	-				-1.0
4,355,513	-				-1.0
4,355,543	+				+0.0
4,355,569	-				-0.3
4,355,571	+				+1.5
4,355,576	+				-1.9
4,355,579	-				-1.1
4,355,584	-				-1.0
4,355,584	-				-0.5
4,355,587	+				-1.0
4,355,624	-				-0.0
4,355,631	+				+1.4
4,355,631	+				+0.1
4,355,631	+				-0.6
4,355,631	+				+0.2
4,355,639	-				+0.9
4,355,639	-				-2.0
4,355,639	-				-0.5
4,355,647	-				-0.4
4,355,654	-				-1.7
4,355,656	-				-1.1
4,355,691	-				-0.7
4,355,691	-				-1.3
4,355,726	-				-0.5
4,355,733	+				-0.8
4,355,738	+				-1.0
4,355,741	-				+0.4
4,355,748	-				-0.7
4,355,754	+				+0.5
4,355,776	+		GFF4356	0.10	+0.9
4,355,791	+		GFF4356	0.11	-0.1
4,355,791	+		GFF4356	0.11	-0.5
4,355,797	-		GFF4356	0.12	-0.3
4,355,799	-		GFF4356	0.12	+0.5
4,355,799	-		GFF4356	0.12	+0.1
4,355,799	-		GFF4356	0.12	-1.9