Strain Fitness in Sphingobium sp. HT1-2 around GFF4335

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,337,675	-				-1.8
4,337,702	+				+0.3
4,337,702	+				-0.3
4,337,702	+				+0.2
4,337,702	+				-0.7
4,337,702	+				-0.1
4,337,707	-				+0.5
4,337,710	-				-2.3
4,337,710	-				+0.1
4,337,710	-				-0.5
4,337,710	-				-0.9
4,337,712	+				+0.8
4,337,712	+				+0.9
4,337,720	-				+0.7
4,337,725	+				-1.8
4,337,725	+				+0.6
4,337,725	+				+0.1
4,337,732	+				-2.4
4,337,732	+				-0.5
4,337,733	-				-1.8
4,337,733	-				-0.4
4,337,733	-				-0.6
4,337,737	+				-0.0
4,337,740	-				+0.4
4,337,745	-				-0.7
4,337,781	+				-0.6
4,337,789	-				+0.9
4,337,814	-				-0.2
4,337,823	+		GFF4334	0.11	+0.6
4,337,823	+		GFF4334	0.11	+0.4
4,337,840	-		GFF4334	0.13	+1.1
4,337,841	-		GFF4334	0.13	-0.1
4,337,841	-		GFF4334	0.13	-1.4
4,337,843	-		GFF4334	0.13	+0.4
4,337,861	-		GFF4334	0.15	-0.5
4,337,882	+		GFF4334	0.17	-2.6
4,337,882	+		GFF4334	0.17	-0.3
4,337,888	+		GFF4334	0.18	-0.3
4,337,890	-		GFF4334	0.18	+0.5
4,337,898	+		GFF4334	0.19	+0.3
4,337,919	-		GFF4334	0.21	-0.8
4,337,920	-		GFF4334	0.21	-2.1
4,337,929	-		GFF4334	0.22	+1.0
4,337,972	+		GFF4334	0.26	-1.8
4,337,997	+		GFF4334	0.29	-0.1
4,337,999	+		GFF4334	0.29	-0.3
4,337,999	+		GFF4334	0.29	+0.3
4,337,999	+		GFF4334	0.29	-0.8
4,337,999	+		GFF4334	0.29	-0.3
4,337,999	+		GFF4334	0.29	-0.3
4,337,999	+		GFF4334	0.29	-0.8
4,337,999	+		GFF4334	0.29	-0.3
4,337,999	+		GFF4334	0.29	+0.4
4,337,999	+		GFF4334	0.29	+0.2
4,338,004	+		GFF4334	0.30	-0.4
4,338,006	-		GFF4334	0.30	-0.9
4,338,007	-		GFF4334	0.30	+0.2
4,338,007	-		GFF4334	0.30	-0.1
4,338,007	-		GFF4334	0.30	+0.2
4,338,007	-		GFF4334	0.30	+0.0
4,338,007	-		GFF4334	0.30	+0.1
4,338,007	-		GFF4334	0.30	-0.2
4,338,007	-		GFF4334	0.30	-0.1
4,338,007	-		GFF4334	0.30	-1.0
4,338,014	+		GFF4334	0.31	+0.5
4,338,014	+		GFF4334	0.31	-0.0
4,338,014	+		GFF4334	0.31	-0.3
4,338,014	+		GFF4334	0.31	-1.1
4,338,014	+		GFF4334	0.31	-1.5
4,338,014	+		GFF4334	0.31	-0.7
4,338,014	+		GFF4334	0.31	-0.4
4,338,014	-		GFF4334	0.31	+0.8
4,338,022	-		GFF4334	0.31	-0.9
4,338,022	-		GFF4334	0.31	-1.7
4,338,022	-		GFF4334	0.31	-1.2
4,338,022	-		GFF4334	0.31	+1.5
4,338,022	-		GFF4334	0.31	-0.1
4,338,022	-		GFF4334	0.31	-1.1
4,338,022	-		GFF4334	0.31	-1.0
4,338,026	+		GFF4334	0.32	-0.9
4,338,026	+		GFF4334	0.32	-0.1
4,338,034	-		GFF4334	0.33	-1.0
4,338,038	+		GFF4334	0.33	-1.3
4,338,045	+		GFF4334	0.34	-0.1
4,338,046	-		GFF4334	0.34	-0.7
4,338,053	-		GFF4334	0.35	-1.0
4,338,053	-		GFF4334	0.35	-0.4
4,338,058	+		GFF4334	0.35	-0.5
4,338,089	-		GFF4334	0.38	-1.2
4,338,116	+		GFF4334	0.41	-2.5
4,338,116	+		GFF4334	0.41	+0.4
4,338,116	+		GFF4334	0.41	+0.1
4,338,116	+		GFF4334	0.41	+0.5
4,338,118	+		GFF4334	0.41	-0.4
4,338,118	+		GFF4334	0.41	-0.1
4,338,118	-		GFF4334	0.41	-2.1
4,338,123	-		GFF4334	0.42	-0.4
4,338,124	-		GFF4334	0.42	+0.1
4,338,124	-		GFF4334	0.42	-0.1
4,338,124	-		GFF4334	0.42	+0.0
4,338,124	-		GFF4334	0.42	-0.4
4,338,126	+		GFF4334	0.42	+0.7
4,338,126	+		GFF4334	0.42	-0.0
4,338,126	+		GFF4334	0.42	-0.8
4,338,131	+		GFF4334	0.43	+0.2
4,338,138	+		GFF4334	0.44	-2.0
4,338,138	+		GFF4334	0.44	+0.5
4,338,138	+		GFF4334	0.44	+0.6
4,338,146	-		GFF4334	0.44	+0.3
4,338,146	-		GFF4334	0.44	-1.2
4,338,146	-		GFF4334	0.44	-0.0
4,338,151	+		GFF4334	0.45	-1.4
4,338,151	+		GFF4334	0.45	-0.8
4,338,177	-		GFF4334	0.48	-0.8
4,338,188	+		GFF4334	0.49	-3.3
4,338,197	-		GFF4334	0.50	+0.5
4,338,198	+		GFF4334	0.50	-1.2
4,338,198	+		GFF4334	0.50	+0.2
4,338,198	+		GFF4334	0.50	-2.6
4,338,198	+		GFF4334	0.50	+0.2
4,338,198	+		GFF4334	0.50	+0.8
4,338,206	+		GFF4334	0.51	-0.9
4,338,206	+		GFF4334	0.51	-2.1
4,338,206	+		GFF4334	0.51	-0.6
4,338,206	+		GFF4334	0.51	+1.3
4,338,206	-		GFF4334	0.51	+0.4
4,338,211	+		GFF4334	0.51	+0.4
4,338,211	+		GFF4334	0.51	-0.7
4,338,211	+		GFF4334	0.51	-1.6
4,338,211	+		GFF4334	0.51	+0.7
4,338,214	-		GFF4334	0.51	-2.1
4,338,219	-		GFF4334	0.52	+0.0
4,338,219	-		GFF4334	0.52	+0.1
4,338,221	+		GFF4334	0.52	+0.6
4,338,229	-		GFF4334	0.53	+1.0
4,338,229	-		GFF4334	0.53	-0.7
4,338,238	-		GFF4334	0.54	+0.1
4,338,245	+		GFF4334	0.55	-0.0
4,338,253	-		GFF4334	0.55	-0.5
4,338,253	-		GFF4334	0.55	-0.4
4,338,253	-		GFF4334	0.55	-0.8
4,338,253	-		GFF4334	0.55	-0.0
4,338,262	+		GFF4334	0.56	-1.1
4,338,263	+		GFF4334	0.56	+0.4
4,338,275	+		GFF4334	0.58	-0.7
4,338,278	-		GFF4334	0.58	-0.1
4,338,280	+		GFF4334	0.58	+0.0
4,338,281	+		GFF4334	0.58	+0.1
4,338,283	-		GFF4334	0.59	+0.9
4,338,310	+		GFF4334	0.61	-1.3
4,338,315	-		GFF4334	0.62	-0.3
4,338,317	+		GFF4334	0.62	-0.6
4,338,318	-		GFF4334	0.62	-0.4
4,338,326	+		GFF4334	0.63	+0.2
4,338,326	+		GFF4334	0.63	+0.5
4,338,328	-		GFF4334	0.63	-2.1
4,338,334	-		GFF4334	0.64	-1.9
4,338,334	-		GFF4334	0.64	+0.5
4,338,334	-		GFF4334	0.64	+0.0
4,338,334	-		GFF4334	0.64	+0.3
4,338,336	-		GFF4334	0.64	-0.2
4,338,336	-		GFF4334	0.64	-0.3
4,338,347	+		GFF4334	0.65	-0.8
4,338,359	+		GFF4334	0.66	-1.4
4,338,403	-		GFF4334	0.71	-0.0
4,338,425	+		GFF4334	0.73	-0.7
4,338,425	+		GFF4334	0.73	-0.5
4,338,431	-		GFF4334	0.74	-1.7
4,338,460	+		GFF4334	0.77	-0.9
4,338,488	+		GFF4334	0.80	-0.6
4,338,506	+		GFF4334	0.82	-0.1
4,338,506	+		GFF4334	0.82	-0.4
4,338,514	-		GFF4334	0.83	+0.3
4,338,527	+		GFF4334	0.84	-1.3
4,338,527	+		GFF4334	0.84	-0.2
4,338,527	+		GFF4334	0.84	+0.1
4,338,527	+		GFF4334	0.84	+0.1
4,338,527	+		GFF4334	0.84	+0.2
4,338,527	+		GFF4334	0.84	-0.7
4,338,527	+		GFF4334	0.84	-0.1
4,338,527	+		GFF4334	0.84	+1.1
4,338,527	+		GFF4334	0.84	-1.1
4,338,527	+		GFF4334	0.84	+0.1
4,338,527	+		GFF4334	0.84	-0.7
4,338,527	+		GFF4334	0.84	+0.4
4,338,530	-		GFF4334	0.84	-1.0
4,338,532	-		GFF4334	0.84	+1.3
4,338,535	-		GFF4334	0.85	+0.3
4,338,535	-		GFF4334	0.85	-0.5
4,338,535	-		GFF4334	0.85	+0.0
4,338,535	-		GFF4334	0.85	-0.0
4,338,535	-		GFF4334	0.85	-0.7
4,338,535	-		GFF4334	0.85	+0.2
4,338,535	-		GFF4334	0.85	+0.1
4,338,535	-		GFF4334	0.85	+0.1
4,338,539	+		GFF4334	0.85	+1.0
4,338,539	+		GFF4334	0.85	-1.4
4,338,539	+		GFF4334	0.85	-0.3
4,338,545	-		GFF4334	0.86	-0.2
4,338,551	+		GFF4334	0.86	+0.9
4,338,551	+		GFF4334	0.86	+0.4
4,338,575	+		GFF4334	0.89	-2.2
4,338,575	-		GFF4334	0.89	+1.1
4,338,579	+		GFF4334	0.89	-0.3
4,338,579	+		GFF4334	0.89	-0.7
4,338,583	-		GFF4334	0.90	-2.6
4,338,592	+				+0.1
4,338,592	+				-1.7
4,338,594	+				-0.4
4,338,594	+				+0.5
4,338,594	+				+0.7
4,338,599	+				-0.6
4,338,602	-				-0.6
4,338,612	-				-0.1
4,338,612	-				-1.7
4,338,617	+				-0.8
4,338,619	-				-0.7
4,338,629	-				-1.0
4,338,658	-				-0.4
4,338,670	+				-2.3
4,338,677	+				+1.5
4,338,689	+				+0.6
4,338,702	-		GFF4335	0.18	-1.1
4,338,713	+		GFF4335	0.25	-0.6
4,338,713	+		GFF4335	0.25	+0.9
4,338,721	-		GFF4335	0.30	-0.2
4,338,726	-		GFF4335	0.33	+1.0
4,338,775	-		GFF4335	0.65	-1.7
4,338,787	+		GFF4335	0.72	-0.1
4,338,787	+		GFF4335	0.72	-0.1
4,338,787	+		GFF4335	0.72	+0.1
4,338,787	+		GFF4335	0.72	+0.6
4,338,795	-		GFF4335	0.78	-0.1
4,338,795	-		GFF4335	0.78	-0.1
4,338,819	+				-0.0
4,338,822	-				-1.3
4,338,846	-				-1.6
4,338,860	+				+1.0
4,338,860	+				-2.3
4,338,860	+				-1.1
4,338,868	-				-0.9
4,338,892	+				-1.3
4,338,900	-		GFF4336	0.10	+1.2
4,338,917	+		GFF4336	0.12	+0.2
4,338,956	-		GFF4336	0.18	-1.9
4,338,967	-		GFF4336	0.19	+1.0
4,338,967	-		GFF4336	0.19	-0.5
4,338,983	-		GFF4336	0.21	+0.4
4,339,008	-		GFF4336	0.25	-3.1
4,339,008	-		GFF4336	0.25	-1.1
4,339,009	-		GFF4336	0.25	-0.4
4,339,027	-		GFF4336	0.27	+0.8
4,339,038	-		GFF4336	0.29	-1.2
4,339,041	+		GFF4336	0.29	-0.2
4,339,042	-		GFF4336	0.29	+0.5
4,339,049	-		GFF4336	0.30	+0.0
4,339,061	+		GFF4336	0.32	+0.1
4,339,061	+		GFF4336	0.32	+0.2
4,339,061	+		GFF4336	0.32	-1.3
4,339,061	+		GFF4336	0.32	+0.3
4,339,061	+		GFF4336	0.32	-1.3
4,339,069	-		GFF4336	0.33	-0.6
4,339,069	-		GFF4336	0.33	+1.6
4,339,095	+		GFF4336	0.36	-0.7
4,339,102	+		GFF4336	0.37	-0.2
4,339,114	-		GFF4336	0.39	+0.3
4,339,114	-		GFF4336	0.39	+0.5
4,339,125	+		GFF4336	0.41	-0.4
4,339,126	+		GFF4336	0.41	-0.6
4,339,127	+		GFF4336	0.41	-2.3
4,339,127	+		GFF4336	0.41	-2.8
4,339,127	+		GFF4336	0.41	-0.2
4,339,127	+		GFF4336	0.41	+0.9
4,339,127	+		GFF4336	0.41	-0.2
4,339,133	-		GFF4336	0.42	-0.4
4,339,133	-		GFF4336	0.42	-0.7
4,339,133	-		GFF4336	0.42	-0.6
4,339,133	-		GFF4336	0.42	-1.1
4,339,135	-		GFF4336	0.42	-0.5
4,339,135	-		GFF4336	0.42	+0.3
4,339,135	-		GFF4336	0.42	-0.1
4,339,135	-		GFF4336	0.42	-1.9
4,339,135	-		GFF4336	0.42	-0.0
4,339,135	-		GFF4336	0.42	-1.8
4,339,135	-		GFF4336	0.42	-0.7
4,339,136	+		GFF4336	0.42	-0.6
4,339,136	+		GFF4336	0.42	-0.8
4,339,169	+		GFF4336	0.46	-0.9
4,339,169	+		GFF4336	0.46	-0.6
4,339,169	+		GFF4336	0.46	-0.2
4,339,169	+		GFF4336	0.46	-1.4
4,339,170	+		GFF4336	0.47	-2.8
4,339,177	+		GFF4336	0.48	+1.0
4,339,177	-		GFF4336	0.48	+0.5
4,339,185	-		GFF4336	0.49	-1.5
4,339,185	-		GFF4336	0.49	-0.3
4,339,194	+		GFF4336	0.50	+0.5
4,339,195	-		GFF4336	0.50	-0.8
4,339,202	-		GFF4336	0.51	-1.6
4,339,204	-		GFF4336	0.51	-1.8
4,339,229	+		GFF4336	0.55	-0.2
4,339,229	+		GFF4336	0.55	+0.2
4,339,233	-		GFF4336	0.55	-0.7
4,339,248	-		GFF4336	0.57	+0.6
4,339,248	-		GFF4336	0.57	-0.6
4,339,259	+		GFF4336	0.59	-2.4
4,339,286	+		GFF4336	0.62	-1.2
4,339,291	+		GFF4336	0.63	-1.2
4,339,294	-		GFF4336	0.63	+0.0
4,339,296	+		GFF4336	0.64	-1.9
4,339,296	-		GFF4336	0.64	+0.0
4,339,299	-		GFF4336	0.64	-0.4
4,339,303	+		GFF4336	0.65	-1.3
4,339,304	-		GFF4336	0.65	-0.7
4,339,333	-		GFF4336	0.69	-0.3
4,339,333	-		GFF4336	0.69	-0.5
4,339,340	-		GFF4336	0.70	-2.8
4,339,344	+		GFF4336	0.70	-0.9
4,339,349	+		GFF4336	0.71	-0.2
4,339,349	+		GFF4336	0.71	-0.7
4,339,349	+		GFF4336	0.71	-0.2
4,339,349	+		GFF4336	0.71	+0.8
4,339,349	+		GFF4336	0.71	-1.2
4,339,349	+		GFF4336	0.71	-0.5
4,339,349	+		GFF4336	0.71	+0.1
4,339,351	+		GFF4336	0.71	-0.2
4,339,351	+		GFF4336	0.71	-0.4
4,339,351	+		GFF4336	0.71	-0.0
4,339,351	+		GFF4336	0.71	-1.7
4,339,351	+		GFF4336	0.71	-0.9
4,339,357	+		GFF4336	0.72	+0.6
4,339,357	-		GFF4336	0.72	-0.4
4,339,357	-		GFF4336	0.72	+0.0
4,339,357	-		GFF4336	0.72	-2.9
4,339,357	-		GFF4336	0.72	-2.1
4,339,357	-		GFF4336	0.72	-1.7
4,339,357	-		GFF4336	0.72	+0.4
4,339,357	-		GFF4336	0.72	+1.3
4,339,357	-		GFF4336	0.72	+0.6
4,339,357	-		GFF4336	0.72	+1.5
4,339,357	-		GFF4336	0.72	-2.0
4,339,357	-		GFF4336	0.72	+1.1
4,339,357	-		GFF4336	0.72	-1.6
4,339,359	-		GFF4336	0.72	+0.3
4,339,359	-		GFF4336	0.72	+0.5
4,339,366	+		GFF4336	0.73	+0.1
4,339,368	+		GFF4336	0.73	+0.4
4,339,368	+		GFF4336	0.73	-0.2
4,339,376	-		GFF4336	0.75	+0.8
4,339,379	+		GFF4336	0.75	-0.4
4,339,397	-		GFF4336	0.77	+1.3
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