Strain Fitness in Sphingobium sp. HT1-2 around GFF4306

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,313,798	+		GFF4304	0.33	-1.5
4,313,820	+		GFF4304	0.35	-2.7
4,313,828	+		GFF4304	0.36	+0.0
4,313,828	+		GFF4304	0.36	-0.8
4,313,828	-		GFF4304	0.36	-1.6
4,313,845	+		GFF4304	0.37	+0.2
4,313,900	+		GFF4304	0.43	-0.0
4,313,903	-		GFF4304	0.43	+0.3
4,313,906	-		GFF4304	0.43	-0.7
4,313,906	-		GFF4304	0.43	-0.4
4,313,906	-		GFF4304	0.43	-0.2
4,313,906	-		GFF4304	0.43	-1.5
4,313,919	+		GFF4304	0.45	-0.2
4,313,927	-		GFF4304	0.46	-0.8
4,313,927	-		GFF4304	0.46	-0.5
4,313,927	-		GFF4304	0.46	-0.1
4,313,927	-		GFF4304	0.46	-0.0
4,313,938	+		GFF4304	0.47	+0.3
4,313,938	+		GFF4304	0.47	-1.0
4,313,938	+		GFF4304	0.47	-0.6
4,313,941	-		GFF4304	0.47	-0.0
4,313,941	-		GFF4304	0.47	+0.4
4,313,946	+		GFF4304	0.47	+0.2
4,313,956	-		GFF4304	0.48	-1.6
4,313,963	+		GFF4304	0.49	+0.2
4,313,971	-		GFF4304	0.50	-1.4
4,313,972	+		GFF4304	0.50	-0.1
4,313,976	-		GFF4304	0.50	-1.5
4,313,991	-		GFF4304	0.52	+0.3
4,313,993	+		GFF4304	0.52	-0.6
4,313,996	-		GFF4304	0.52	-2.2
4,313,996	-		GFF4304	0.52	+0.6
4,313,998	+		GFF4304	0.53	+0.1
4,314,001	-		GFF4304	0.53	+0.3
4,314,003	+		GFF4304	0.53	+0.2
4,314,006	-		GFF4304	0.53	-0.3
4,314,006	-		GFF4304	0.53	-1.0
4,314,006	-		GFF4304	0.53	-1.7
4,314,028	+		GFF4304	0.56	-1.5
4,314,028	+		GFF4304	0.56	-0.4
4,314,033	+		GFF4304	0.56	+0.1
4,314,033	+		GFF4304	0.56	+0.1
4,314,038	-		GFF4304	0.57	+1.0
4,314,041	-		GFF4304	0.57	-0.1
4,314,041	-		GFF4304	0.57	-0.7
4,314,041	-		GFF4304	0.57	-0.2
4,314,080	+		GFF4304	0.61	-0.9
4,314,080	+		GFF4304	0.61	+0.3
4,314,080	+		GFF4304	0.61	+1.0
4,314,080	+		GFF4304	0.61	-0.3
4,314,080	+		GFF4304	0.61	-1.0
4,314,080	+		GFF4304	0.61	-0.5
4,314,080	+		GFF4304	0.61	-1.4
4,314,080	+		GFF4304	0.61	-1.2
4,314,080	+		GFF4304	0.61	-0.5
4,314,080	+		GFF4304	0.61	+0.8
4,314,080	+		GFF4304	0.61	-1.7
4,314,080	+		GFF4304	0.61	+0.3
4,314,088	-		GFF4304	0.61	-0.7
4,314,088	-		GFF4304	0.61	+1.0
4,314,088	-		GFF4304	0.61	-0.9
4,314,088	-		GFF4304	0.61	-0.5
4,314,088	-		GFF4304	0.61	-0.0
4,314,088	-		GFF4304	0.61	-0.2
4,314,088	-		GFF4304	0.61	-0.2
4,314,104	-		GFF4304	0.63	+0.8
4,314,109	-		GFF4304	0.64	-0.6
4,314,116	+		GFF4304	0.64	-0.0
4,314,116	+		GFF4304	0.64	-0.6
4,314,116	+		GFF4304	0.64	-0.3
4,314,117	-		GFF4304	0.64	-0.2
4,314,119	-		GFF4304	0.64	-0.2
4,314,122	+		GFF4304	0.65	-2.7
4,314,124	-		GFF4304	0.65	+0.0
4,314,124	-		GFF4304	0.65	+0.1
4,314,124	-		GFF4304	0.65	-0.5
4,314,124	-		GFF4304	0.65	-0.7
4,314,124	-		GFF4304	0.65	+0.3
4,314,127	+		GFF4304	0.65	-0.6
4,314,144	+		GFF4304	0.67	-0.5
4,314,159	+		GFF4304	0.68	-1.3
4,314,164	+		GFF4304	0.69	+0.4
4,314,165	-		GFF4304	0.69	+1.0
4,314,166	+		GFF4304	0.69	-0.6
4,314,174	-		GFF4304	0.70	-0.7
4,314,174	-		GFF4304	0.70	-0.2
4,314,177	+		GFF4304	0.70	+0.6
4,314,177	+		GFF4304	0.70	-0.8
4,314,182	+		GFF4304	0.71	-1.7
4,314,182	+		GFF4304	0.71	-1.4
4,314,182	+		GFF4304	0.71	-1.7
4,314,182	+		GFF4304	0.71	+0.3
4,314,184	-		GFF4304	0.71	-0.0
4,314,190	-		GFF4304	0.71	-0.9
4,314,190	-		GFF4304	0.71	+0.2
4,314,275	-		GFF4304	0.80	-0.4
4,314,314	+		GFF4304	0.84	+0.1
4,314,314	+		GFF4304	0.84	+0.5
4,314,314	+		GFF4304	0.84	-0.5
4,314,322	-		GFF4304	0.85	+0.6
4,314,322	-		GFF4304	0.85	-2.0
4,314,322	-		GFF4304	0.85	+0.4
4,314,322	-		GFF4304	0.85	-0.4
4,314,322	-		GFF4304	0.85	-0.3
4,314,322	-		GFF4304	0.85	-0.3
4,314,346	+		GFF4304	0.87	-1.5
4,314,346	+		GFF4304	0.87	-2.1
4,314,346	+		GFF4304	0.87	+0.4
4,314,351	+		GFF4304	0.87	-1.2
4,314,354	-		GFF4304	0.88	+0.1
4,314,354	-		GFF4304	0.88	+0.8
4,314,354	-		GFF4304	0.88	-0.5
4,314,359	-		GFF4304	0.88	+0.2
4,314,359	-		GFF4304	0.88	+0.1
4,314,359	-		GFF4304	0.88	-0.5
4,314,364	-		GFF4304	0.89	-0.1
4,314,372	+		GFF4304	0.89	+0.3
4,314,372	+		GFF4304	0.89	+0.7
4,314,372	+		GFF4304	0.89	+0.6
4,314,374	+		GFF4304	0.90	+0.3
4,314,393	-				+0.1
4,314,406	+				-0.8
4,314,416	-				-0.3
4,314,417	+				-2.1
4,314,417	+				-0.6
4,314,423	+				+0.9
4,314,449	-				-0.6
4,314,466	-				+0.6
4,314,466	-				-0.5
4,314,486	+				+0.8
4,314,486	+				-1.6
4,314,487	+				+0.8
4,314,487	+				+1.3
4,314,494	+				-1.0
4,314,494	+				-0.1
4,314,536	+		GFF4305	0.21	-3.1
4,314,554	+		GFF4305	0.27	-1.6
4,314,554	+		GFF4305	0.27	-1.7
4,314,554	+		GFF4305	0.27	-1.0
4,314,554	+		GFF4305	0.27	+0.6
4,314,554	+		GFF4305	0.27	-1.8
4,314,554	+		GFF4305	0.27	-0.7
4,314,562	-		GFF4305	0.30	-1.9
4,314,562	-		GFF4305	0.30	-0.2
4,314,562	-		GFF4305	0.30	-0.7
4,314,562	-		GFF4305	0.30	+0.5
4,314,562	-		GFF4305	0.30	+1.2
4,314,562	-		GFF4305	0.30	-1.3
4,314,562	-		GFF4305	0.30	-0.8
4,314,562	-		GFF4305	0.30	-0.7
4,314,562	-		GFF4305	0.30	+0.1
4,314,562	-		GFF4305	0.30	-0.3
4,314,564	+		GFF4305	0.31	-1.6
4,314,569	+		GFF4305	0.33	-0.4
4,314,569	+		GFF4305	0.33	+0.0
4,314,571	+		GFF4305	0.33	-0.9
4,314,571	+		GFF4305	0.33	+1.0
4,314,571	+		GFF4305	0.33	+0.7
4,314,571	+		GFF4305	0.33	-2.2
4,314,577	-		GFF4305	0.35	-1.9
4,314,579	-		GFF4305	0.36	+0.4
4,314,598	-		GFF4305	0.43	-2.1
4,314,617	+		GFF4305	0.49	+0.1
4,314,617	+		GFF4305	0.49	+0.4
4,314,617	+		GFF4305	0.49	-0.5
4,314,617	+		GFF4305	0.49	+0.2
4,314,617	+		GFF4305	0.49	+0.5
4,314,617	+		GFF4305	0.49	+1.9
4,314,617	+		GFF4305	0.49	-0.9
4,314,617	+		GFF4305	0.49	-1.0
4,314,617	+		GFF4305	0.49	+0.9
4,314,617	+		GFF4305	0.49	-0.1
4,314,617	+		GFF4305	0.49	-0.0
4,314,618	+		GFF4305	0.50	-0.2
4,314,625	-		GFF4305	0.52	-1.6
4,314,625	-		GFF4305	0.52	-1.0
4,314,625	-		GFF4305	0.52	-0.3
4,314,625	-		GFF4305	0.52	+0.1
4,314,625	-		GFF4305	0.52	-1.0
4,314,625	-		GFF4305	0.52	+0.3
4,314,625	-		GFF4305	0.52	+0.1
4,314,625	-		GFF4305	0.52	+0.3
4,314,627	-		GFF4305	0.53	-1.9
4,314,627	-		GFF4305	0.53	+0.2
4,314,629	+		GFF4305	0.53	+0.4
4,314,629	+		GFF4305	0.53	+0.5
4,314,630	-		GFF4305	0.54	+0.1
4,314,637	-		GFF4305	0.56	-1.1
4,314,639	+		GFF4305	0.57	+0.1
4,314,664	-		GFF4305	0.66	+0.3
4,314,664	-		GFF4305	0.66	-1.8
4,314,666	+		GFF4305	0.66	-0.5
4,314,666	+		GFF4305	0.66	+0.1
4,314,679	+		GFF4305	0.71	-0.2
4,314,679	+		GFF4305	0.71	+0.1
4,314,687	-		GFF4305	0.74	-0.1
4,314,687	-		GFF4305	0.74	-1.4
4,314,687	-		GFF4305	0.74	-0.0
4,314,687	-		GFF4305	0.74	+0.4
4,314,687	-		GFF4305	0.74	+0.2
4,314,687	-		GFF4305	0.74	-1.3
4,314,687	-		GFF4305	0.74	-0.5
4,314,701	+		GFF4305	0.78	-0.2
4,314,702	+		GFF4305	0.79	-1.0
4,314,709	-		GFF4305	0.81	+0.1
4,314,716	-		GFF4305	0.84	-1.0
4,314,732	+		GFF4305	0.89	+0.5
4,314,737	+				+1.2
4,314,747	+				+0.3
4,314,755	-				-1.7
4,314,777	-				-0.4
4,314,788	+				-0.9
4,314,795	+				-2.2
4,314,796	-				-0.6
4,314,808	+				+0.1
4,314,815	-				-0.9
4,314,815	-				+1.5
4,314,826	+		GFF4306	0.10	-0.7
4,314,861	-		GFF4306	0.15	-0.1
4,314,894	+		GFF4306	0.20	-0.5
4,314,909	+		GFF4306	0.23	-1.9
4,314,909	+		GFF4306	0.23	+1.2
4,314,917	-		GFF4306	0.24	+0.3
4,314,955	+		GFF4306	0.30	-0.1
4,314,955	+		GFF4306	0.30	-1.3
4,314,963	-		GFF4306	0.31	+0.5
4,314,963	-		GFF4306	0.31	-0.1
4,314,965	-		GFF4306	0.31	+0.8
4,314,973	+		GFF4306	0.32	-0.1
4,314,973	+		GFF4306	0.32	+0.3
4,314,973	+		GFF4306	0.32	+0.4
4,314,975	+		GFF4306	0.33	-1.5
4,314,975	+		GFF4306	0.33	+0.1
4,314,981	-		GFF4306	0.34	-0.5
4,314,983	-		GFF4306	0.34	+0.6
4,315,011	-		GFF4306	0.38	-2.5
4,315,042	+		GFF4306	0.43	-0.3
4,315,058	-		GFF4306	0.45	-1.1
4,315,069	-		GFF4306	0.47	-0.1
4,315,071	+		GFF4306	0.47	+0.5
4,315,085	-		GFF4306	0.49	-0.9
4,315,094	+		GFF4306	0.51	-2.1
4,315,094	+		GFF4306	0.51	+0.6
4,315,094	+		GFF4306	0.51	-0.0
4,315,094	+		GFF4306	0.51	-0.3
4,315,094	+		GFF4306	0.51	-0.6
4,315,096	+		GFF4306	0.51	+0.6
4,315,102	-		GFF4306	0.52	+0.5
4,315,102	-		GFF4306	0.52	+1.3
4,315,102	-		GFF4306	0.52	-1.6
4,315,102	-		GFF4306	0.52	-0.0
4,315,104	-		GFF4306	0.52	-0.9
4,315,108	-		GFF4306	0.53	+1.0
4,315,108	-		GFF4306	0.53	+0.2
4,315,125	+		GFF4306	0.55	-1.0
4,315,126	-		GFF4306	0.56	+0.2
4,315,158	-		GFF4306	0.60	+0.4
4,315,158	-		GFF4306	0.60	-1.0
4,315,170	-		GFF4306	0.62	-0.3
4,315,196	-		GFF4306	0.66	+0.8
4,315,208	+		GFF4306	0.68	-1.3
4,315,221	-		GFF4306	0.70	-0.6
4,315,230	-		GFF4306	0.71	-0.5
4,315,236	-		GFF4306	0.72	+0.2
4,315,249	+		GFF4306	0.74	-0.7
4,315,249	+		GFF4306	0.74	-1.2
4,315,252	-		GFF4306	0.75	-0.5
4,315,252	-		GFF4306	0.75	-0.0
4,315,256	+		GFF4306	0.75	+0.1
4,315,256	-		GFF4306	0.75	-0.2
4,315,257	-		GFF4306	0.75	-0.0
4,315,257	-		GFF4306	0.75	-1.0
4,315,257	-		GFF4306	0.75	-0.9
4,315,257	-		GFF4306	0.75	+0.2
4,315,257	-		GFF4306	0.75	+0.2
4,315,272	+		GFF4306	0.78	-1.3
4,315,295	+		GFF4306	0.81	+0.4
4,315,295	+		GFF4306	0.81	+0.3
4,315,297	+		GFF4306	0.82	-0.1
4,315,297	+		GFF4306	0.82	+0.2
4,315,297	+		GFF4306	0.82	-0.8
4,315,297	+		GFF4306	0.82	+0.2
4,315,297	+		GFF4306	0.82	-0.1
4,315,297	+		GFF4306	0.82	-2.1
4,315,302	+		GFF4306	0.82	-1.0
4,315,302	+		GFF4306	0.82	+0.7
4,315,302	+		GFF4306	0.82	-1.2
4,315,302	+		GFF4306	0.82	+0.5
4,315,303	+		GFF4306	0.82	-1.8
4,315,303	-		GFF4306	0.82	+0.1
4,315,303	-		GFF4306	0.82	+0.2
4,315,305	-		GFF4306	0.83	-2.2
4,315,305	-		GFF4306	0.83	-0.9
4,315,305	-		GFF4306	0.83	+0.3
4,315,310	-		GFF4306	0.83	-1.2
4,315,310	-		GFF4306	0.83	-0.0
4,315,310	-		GFF4306	0.83	+0.0
4,315,316	+		GFF4306	0.84	+0.4
4,315,323	+		GFF4306	0.85	-0.9
4,315,323	-		GFF4306	0.85	-0.1
4,315,328	+		GFF4306	0.86	-0.3
4,315,341	+		GFF4306	0.88	-0.1
4,315,341	+		GFF4306	0.88	-0.4
4,315,341	+		GFF4306	0.88	+0.0
4,315,341	+		GFF4306	0.88	+0.1
4,315,343	+		GFF4306	0.88	-1.3
4,315,349	-		GFF4306	0.89	-1.8
4,315,349	-		GFF4306	0.89	+0.2
4,315,349	-		GFF4306	0.89	-1.4
4,315,349	-		GFF4306	0.89	+0.4
4,315,350	+		GFF4306	0.90	+1.0
4,315,351	+		GFF4306	0.90	-2.3
4,315,371	+				-0.0
4,315,371	-				-0.1
4,315,373	+				+0.7
4,315,373	+				-0.1
4,315,391	-				+0.0
4,315,434	+				+0.3
4,315,434	+				-1.0
4,315,442	-				-0.0
4,315,442	-				-0.7
4,315,447	+				-0.5
4,315,455	-				-0.6
4,315,457	+				+0.1
4,315,457	+				+0.2
4,315,457	+				-1.8
4,315,457	+				+0.6
4,315,457	+				-0.9
4,315,457	+				-0.1
4,315,465	-				-0.7
4,315,465	-				-2.2
4,315,465	-				-0.0
4,315,465	-				+0.4
4,315,465	-				-1.5
4,315,465	-				-2.0
4,315,466	+				+1.0
4,315,481	-		GFF4307	0.12	-1.7
4,315,484	+		GFF4307	0.13	-0.4
4,315,490	-		GFF4307	0.14	-0.7
4,315,492	+		GFF4307	0.14	+0.1
4,315,513	+		GFF4307	0.18	+0.3
4,315,518	+		GFF4307	0.19	+0.2
4,315,521	-		GFF4307	0.19	-0.5
4,315,523	+		GFF4307	0.20	-1.9
4,315,531	-		GFF4307	0.21	-0.0
4,315,531	-		GFF4307	0.21	-2.0
4,315,531	-		GFF4307	0.21	+0.7
4,315,531	-		GFF4307	0.21	-0.8
4,315,531	-		GFF4307	0.21	+0.7
4,315,531	-		GFF4307	0.21	+0.2
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