Strain Fitness in Sphingobium sp. HT1-2 around GFF4261

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4259 and GFF4260 are separated by 17 nucleotidesGFF4260 and GFF4261 are separated by 467 nucleotidesGFF4261 and GFF4262 are separated by 195 nucleotides GFF4259 - hypothetical protein, at 4,274,880 to 4,275,626 GFF4259 GFF4260 - Single-stranded DNA-binding protein, at 4,275,644 to 4,275,982 GFF4260 GFF4261 - hypothetical protein, at 4,276,450 to 4,277,022 GFF4261 GFF4262 - hypothetical protein, at 4,277,218 to 4,278,207 GFF4262 Position (kb) 4276 4277 4278Strain fitness (log2 ratio) -2 -1 0 1 2at 4275.455 kb on - strand, within GFF4259at 4275.455 kb on - strand, within GFF4259at 4275.460 kb on - strand, within GFF4259at 4275.470 kb on - strand, within GFF4259at 4275.475 kb on + strand, within GFF4259at 4275.548 kb on + strand, within GFF4259at 4275.556 kb on - strandat 4275.557 kb on + strandat 4275.590 kb on + strandat 4275.598 kb on - strandat 4275.598 kb on - strandat 4275.598 kb on - strandat 4275.603 kb on - strandat 4275.651 kb on + strandat 4275.681 kb on + strand, within GFF4260at 4275.681 kb on + strand, within GFF4260at 4275.681 kb on + strand, within GFF4260at 4275.681 kb on + strand, within GFF4260at 4275.681 kb on + strand, within GFF4260at 4275.681 kb on + strand, within GFF4260at 4275.681 kb on + strand, within GFF4260at 4275.681 kb on + strand, within GFF4260at 4275.681 kb on + strand, within GFF4260at 4275.681 kb on + strand, within GFF4260at 4275.681 kb on + strand, within GFF4260at 4275.681 kb on + strand, within GFF4260at 4275.681 kb on + strand, within GFF4260at 4275.681 kb on + strand, within GFF4260at 4275.681 kb on - strand, within GFF4260at 4275.689 kb on - strand, within GFF4260at 4275.689 kb on - strand, within GFF4260at 4275.689 kb on - strand, within GFF4260at 4275.689 kb on - strand, within GFF4260at 4275.689 kb on - strand, within GFF4260at 4275.689 kb on - strand, within GFF4260at 4275.689 kb on - strand, within GFF4260at 4275.689 kb on - strand, within GFF4260at 4275.689 kb on - strand, within GFF4260at 4275.689 kb on - strand, within GFF4260at 4275.689 kb on - strand, within GFF4260at 4275.754 kb on + strand, within GFF4260at 4275.754 kb on + strand, within GFF4260at 4275.759 kb on - strand, within GFF4260at 4275.778 kb on + strand, within GFF4260at 4275.779 kb on + strand, within GFF4260at 4275.787 kb on - strand, within GFF4260at 4275.814 kb on + strand, within GFF4260at 4275.814 kb on - strand, within GFF4260at 4275.822 kb on - strand, within GFF4260at 4275.822 kb on - strand, within GFF4260at 4275.898 kb on + strand, within GFF4260at 4275.901 kb on + strand, within GFF4260at 4275.904 kb on + strand, within GFF4260at 4275.920 kb on + strand, within GFF4260at 4275.938 kb on + strand, within GFF4260at 4275.979 kb on - strandat 4275.989 kb on - strandat 4276.004 kb on - strandat 4276.004 kb on - strandat 4276.117 kb on + strandat 4276.117 kb on + strandat 4276.117 kb on + strandat 4276.144 kb on - strandat 4276.144 kb on - strandat 4276.196 kb on - strandat 4276.219 kb on + strandat 4276.281 kb on + strandat 4276.281 kb on + strandat 4276.290 kb on + strandat 4276.350 kb on - strandat 4276.353 kb on + strandat 4276.353 kb on + strandat 4276.353 kb on + strandat 4276.361 kb on - strandat 4276.361 kb on - strandat 4276.361 kb on - strandat 4276.368 kb on + strandat 4276.368 kb on + strandat 4276.387 kb on + strandat 4276.489 kb on - strandat 4276.503 kb on - strandat 4276.538 kb on - strand, within GFF4261at 4276.539 kb on - strand, within GFF4261at 4276.561 kb on + strand, within GFF4261at 4276.569 kb on - strand, within GFF4261at 4276.627 kb on + strand, within GFF4261at 4276.775 kb on + strand, within GFF4261at 4276.844 kb on - strand, within GFF4261at 4276.862 kb on - strand, within GFF4261at 4276.880 kb on + strand, within GFF4261at 4276.936 kb on + strand, within GFF4261at 4276.981 kb on + strandat 4276.993 kb on + strandat 4276.999 kb on + strandat 4277.034 kb on - strandat 4277.146 kb on + strandat 4277.146 kb on + strandat 4277.166 kb on + strandat 4277.187 kb on - strandat 4277.215 kb on + strandat 4277.294 kb on + strandat 4277.295 kb on - strandat 4277.329 kb on + strand, within GFF4262at 4277.334 kb on + strand, within GFF4262at 4277.334 kb on + strand, within GFF4262at 4277.342 kb on - strand, within GFF4262at 4277.342 kb on - strand, within GFF4262at 4277.353 kb on + strand, within GFF4262at 4277.368 kb on - strand, within GFF4262at 4277.375 kb on + strand, within GFF4262at 4277.383 kb on - strand, within GFF4262at 4277.419 kb on + strand, within GFF4262at 4277.420 kb on + strand, within GFF4262at 4277.420 kb on + strand, within GFF4262at 4277.428 kb on + strand, within GFF4262at 4277.452 kb on - strand, within GFF4262at 4277.454 kb on + strand, within GFF4262at 4277.497 kb on - strand, within GFF4262at 4277.498 kb on - strand, within GFF4262at 4277.518 kb on + strand, within GFF4262at 4277.544 kb on + strand, within GFF4262at 4277.556 kb on + strand, within GFF4262at 4277.564 kb on + strand, within GFF4262at 4277.580 kb on + strand, within GFF4262at 4277.580 kb on + strand, within GFF4262at 4277.580 kb on + strand, within GFF4262at 4277.580 kb on + strand, within GFF4262at 4277.580 kb on + strand, within GFF4262at 4277.580 kb on + strand, within GFF4262at 4277.580 kb on + strand, within GFF4262at 4277.580 kb on + strand, within GFF4262at 4277.580 kb on + strand, within GFF4262at 4277.588 kb on - strand, within GFF4262at 4277.588 kb on - strand, within GFF4262at 4277.588 kb on - strand, within GFF4262at 4277.588 kb on - strand, within GFF4262at 4277.588 kb on - strand, within GFF4262at 4277.618 kb on + strand, within GFF4262at 4277.624 kb on + strand, within GFF4262at 4277.626 kb on + strand, within GFF4262at 4277.626 kb on + strand, within GFF4262at 4277.632 kb on - strand, within GFF4262at 4277.634 kb on - strand, within GFF4262at 4277.634 kb on - strand, within GFF4262at 4277.640 kb on - strand, within GFF4262at 4277.669 kb on - strand, within GFF4262at 4277.677 kb on + strand, within GFF4262at 4277.685 kb on + strand, within GFF4262at 4277.693 kb on - strand, within GFF4262at 4277.703 kb on + strand, within GFF4262at 4277.703 kb on + strand, within GFF4262at 4277.703 kb on + strand, within GFF4262at 4277.703 kb on - strand, within GFF4262at 4277.711 kb on - strand, within GFF4262at 4277.711 kb on - strand, within GFF4262at 4277.711 kb on - strand, within GFF4262at 4277.711 kb on - strand, within GFF4262at 4277.721 kb on - strand, within GFF4262at 4277.723 kb on + strand, within GFF4262at 4277.732 kb on + strand, within GFF4262at 4277.732 kb on + strand, within GFF4262at 4277.732 kb on + strand, within GFF4262at 4277.732 kb on + strand, within GFF4262at 4277.740 kb on - strand, within GFF4262at 4277.740 kb on - strand, within GFF4262at 4277.740 kb on - strand, within GFF4262at 4277.740 kb on - strand, within GFF4262at 4277.740 kb on - strand, within GFF4262at 4277.742 kb on - strand, within GFF4262at 4277.747 kb on - strand, within GFF4262at 4277.757 kb on + strand, within GFF4262at 4277.769 kb on + strand, within GFF4262at 4277.800 kb on + strand, within GFF4262at 4277.811 kb on - strand, within GFF4262at 4277.816 kb on - strand, within GFF4262at 4277.832 kb on - strand, within GFF4262at 4277.851 kb on - strand, within GFF4262at 4277.853 kb on + strand, within GFF4262at 4277.858 kb on + strand, within GFF4262at 4277.858 kb on + strand, within GFF4262at 4277.866 kb on - strand, within GFF4262at 4277.866 kb on - strand, within GFF4262at 4277.876 kb on - strand, within GFF4262at 4277.887 kb on - strand, within GFF4262at 4277.887 kb on - strand, within GFF4262at 4277.887 kb on - strand, within GFF4262at 4277.896 kb on - strand, within GFF4262at 4277.904 kb on + strand, within GFF4262at 4277.934 kb on + strand, within GFF4262at 4277.942 kb on - strand, within GFF4262at 4277.945 kb on - strand, within GFF4262at 4277.981 kb on + strand, within GFF4262at 4277.989 kb on - strand, within GFF4262at 4277.992 kb on + strand, within GFF4262at 4278.005 kb on - strand, within GFF4262at 4278.018 kb on + strand, within GFF4262

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate
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4,275,455 - GFF4259 0.77 -0.6
4,275,455 - GFF4259 0.77 +0.1
4,275,460 - GFF4259 0.78 +0.5
4,275,470 - GFF4259 0.79 +0.7
4,275,475 + GFF4259 0.80 +0.4
4,275,548 + GFF4259 0.89 -1.7
4,275,556 - +0.1
4,275,557 + +0.3
4,275,590 + +0.2
4,275,598 - +0.4
4,275,598 - +0.5
4,275,598 - -0.5
4,275,603 - -0.7
4,275,651 + -1.8
4,275,681 + GFF4260 0.11 -0.4
4,275,681 + GFF4260 0.11 +0.5
4,275,681 + GFF4260 0.11 -0.6
4,275,681 + GFF4260 0.11 +0.7
4,275,681 + GFF4260 0.11 +0.2
4,275,681 + GFF4260 0.11 -0.2
4,275,681 + GFF4260 0.11 +0.2
4,275,681 + GFF4260 0.11 -0.3
4,275,681 + GFF4260 0.11 -0.0
4,275,681 + GFF4260 0.11 -0.1
4,275,681 + GFF4260 0.11 -0.1
4,275,681 + GFF4260 0.11 +1.9
4,275,681 + GFF4260 0.11 +1.7
4,275,681 + GFF4260 0.11 -2.3
4,275,681 - GFF4260 0.11 +0.9
4,275,689 - GFF4260 0.13 -0.8
4,275,689 - GFF4260 0.13 +1.5
4,275,689 - GFF4260 0.13 +0.2
4,275,689 - GFF4260 0.13 -2.1
4,275,689 - GFF4260 0.13 -0.7
4,275,689 - GFF4260 0.13 +0.5
4,275,689 - GFF4260 0.13 -0.1
4,275,689 - GFF4260 0.13 -0.2
4,275,689 - GFF4260 0.13 +0.9
4,275,689 - GFF4260 0.13 -1.6
4,275,689 - GFF4260 0.13 +0.8
4,275,754 + GFF4260 0.32 +0.2
4,275,754 + GFF4260 0.32 -0.3
4,275,759 - GFF4260 0.34 -0.2
4,275,778 + GFF4260 0.40 -0.0
4,275,779 + GFF4260 0.40 -0.1
4,275,787 - GFF4260 0.42 -1.1
4,275,814 + GFF4260 0.50 -1.3
4,275,814 - GFF4260 0.50 -0.1
4,275,822 - GFF4260 0.53 -0.8
4,275,822 - GFF4260 0.53 -1.3
4,275,898 + GFF4260 0.75 -1.5
4,275,901 + GFF4260 0.76 +0.1
4,275,904 + GFF4260 0.77 +0.9
4,275,920 + GFF4260 0.81 -0.4
4,275,938 + GFF4260 0.87 +0.3
4,275,979 - +0.3
4,275,989 - +1.2
4,276,004 - +0.0
4,276,004 - +1.2
4,276,117 + +0.1
4,276,117 + -0.2
4,276,117 + -0.8
4,276,144 - +0.3
4,276,144 - +0.1
4,276,196 - -0.6
4,276,219 + -0.8
4,276,281 + -0.2
4,276,281 + +0.3
4,276,290 + -0.1
4,276,350 - -1.2
4,276,353 + -0.5
4,276,353 + -1.1
4,276,353 + +1.3
4,276,361 - +0.2
4,276,361 - -1.4
4,276,361 - -1.0
4,276,368 + -0.5
4,276,368 + -0.3
4,276,387 + -0.3
4,276,489 - +0.6
4,276,503 - +0.4
4,276,538 - GFF4261 0.15 +0.1
4,276,539 - GFF4261 0.16 +0.5
4,276,561 + GFF4261 0.19 +0.7
4,276,569 - GFF4261 0.21 -0.8
4,276,627 + GFF4261 0.31 +0.4
4,276,775 + GFF4261 0.57 -0.8
4,276,844 - GFF4261 0.69 +1.4
4,276,862 - GFF4261 0.72 +0.6
4,276,880 + GFF4261 0.75 -0.5
4,276,936 + GFF4261 0.85 +0.6
4,276,981 + +0.4
4,276,993 + +0.2
4,276,999 + +1.7
4,277,034 - -0.2
4,277,146 + +1.6
4,277,146 + +1.2
4,277,166 + -0.1
4,277,187 - -1.0
4,277,215 + +1.7
4,277,294 + -0.4
4,277,295 - +0.6
4,277,329 + GFF4262 0.11 -0.5
4,277,334 + GFF4262 0.12 -1.4
4,277,334 + GFF4262 0.12 +1.9
4,277,342 - GFF4262 0.13 -0.8
4,277,342 - GFF4262 0.13 +0.1
4,277,353 + GFF4262 0.14 +0.3
4,277,368 - GFF4262 0.15 +0.2
4,277,375 + GFF4262 0.16 -0.2
4,277,383 - GFF4262 0.17 +0.6
4,277,419 + GFF4262 0.20 +2.2
4,277,420 + GFF4262 0.20 +0.3
4,277,420 + GFF4262 0.20 +0.2
4,277,428 + GFF4262 0.21 +1.3
4,277,452 - GFF4262 0.24 +0.8
4,277,454 + GFF4262 0.24 -0.0
4,277,497 - GFF4262 0.28 -0.6
4,277,498 - GFF4262 0.28 +2.3
4,277,518 + GFF4262 0.30 -0.9
4,277,544 + GFF4262 0.33 -0.2
4,277,556 + GFF4262 0.34 +1.3
4,277,564 + GFF4262 0.35 -0.0
4,277,580 + GFF4262 0.37 -0.8
4,277,580 + GFF4262 0.37 +0.7
4,277,580 + GFF4262 0.37 -0.4
4,277,580 + GFF4262 0.37 -1.3
4,277,580 + GFF4262 0.37 -0.6
4,277,580 + GFF4262 0.37 -0.3
4,277,580 + GFF4262 0.37 +0.4
4,277,580 + GFF4262 0.37 +1.2
4,277,580 + GFF4262 0.37 -1.0
4,277,588 - GFF4262 0.37 +0.4
4,277,588 - GFF4262 0.37 -1.0
4,277,588 - GFF4262 0.37 +0.9
4,277,588 - GFF4262 0.37 +0.7
4,277,588 - GFF4262 0.37 +0.2
4,277,618 + GFF4262 0.40 -0.2
4,277,624 + GFF4262 0.41 +1.0
4,277,626 + GFF4262 0.41 -0.8
4,277,626 + GFF4262 0.41 +0.3
4,277,632 - GFF4262 0.42 -0.3
4,277,634 - GFF4262 0.42 -0.5
4,277,634 - GFF4262 0.42 -1.2
4,277,640 - GFF4262 0.43 -1.2
4,277,669 - GFF4262 0.46 +0.3
4,277,677 + GFF4262 0.46 -0.4
4,277,685 + GFF4262 0.47 +1.0
4,277,693 - GFF4262 0.48 -0.2
4,277,703 + GFF4262 0.49 +0.3
4,277,703 + GFF4262 0.49 -0.5
4,277,703 + GFF4262 0.49 -1.9
4,277,703 - GFF4262 0.49 +0.6
4,277,711 - GFF4262 0.50 +0.3
4,277,711 - GFF4262 0.50 -0.6
4,277,711 - GFF4262 0.50 -0.3
4,277,711 - GFF4262 0.50 -0.6
4,277,721 - GFF4262 0.51 -1.9
4,277,723 + GFF4262 0.51 -0.2
4,277,732 + GFF4262 0.52 -1.2
4,277,732 + GFF4262 0.52 -0.7
4,277,732 + GFF4262 0.52 +1.2
4,277,732 + GFF4262 0.52 +0.4
4,277,740 - GFF4262 0.53 -0.9
4,277,740 - GFF4262 0.53 +0.4
4,277,740 - GFF4262 0.53 +0.6
4,277,740 - GFF4262 0.53 -0.4
4,277,740 - GFF4262 0.53 -0.6
4,277,742 - GFF4262 0.53 +0.1
4,277,747 - GFF4262 0.53 +0.4
4,277,757 + GFF4262 0.54 -0.5
4,277,769 + GFF4262 0.56 -0.1
4,277,800 + GFF4262 0.59 +0.4
4,277,811 - GFF4262 0.60 -0.9
4,277,816 - GFF4262 0.60 -1.2
4,277,832 - GFF4262 0.62 -0.2
4,277,851 - GFF4262 0.64 -0.9
4,277,853 + GFF4262 0.64 +0.3
4,277,858 + GFF4262 0.65 +0.3
4,277,858 + GFF4262 0.65 +0.3
4,277,866 - GFF4262 0.65 -0.2
4,277,866 - GFF4262 0.65 -1.5
4,277,876 - GFF4262 0.66 -1.3
4,277,887 - GFF4262 0.68 +0.6
4,277,887 - GFF4262 0.68 -1.0
4,277,887 - GFF4262 0.68 +0.7
4,277,896 - GFF4262 0.68 +0.7
4,277,904 + GFF4262 0.69 +0.5
4,277,934 + GFF4262 0.72 -1.2
4,277,942 - GFF4262 0.73 -1.4
4,277,945 - GFF4262 0.73 +0.4
4,277,981 + GFF4262 0.77 +0.6
4,277,989 - GFF4262 0.78 -2.0
4,277,992 + GFF4262 0.78 -0.2
4,278,005 - GFF4262 0.79 +0.6
4,278,018 + GFF4262 0.81 -0.2

Or see this region's nucleotide sequence